RNA id: TU39314


Basic Information

Item Value
RNA id TU39314
length 2358
RNA type TUCP
GC content 0.40
exon number 3
gene id AMCG00019100
representative False

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 3190612 ~ 3210890 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TATTATAGCCCTGCACTTACACACCACAGTTTACCTTGAATGCAGTCTTTAGACATTACTCAACTGTTTTAGTGTTGATTATTTCACAGAGGATAATCTTTAAATTATGTTATGAAAATGTAGAGGATGCATCAGTGGCTGTGGTTTGATACTTTTCACTTTATCtattctgtattgtattataaacaTGATATCATATAAGCCACAGCTATCTACAGAAATGTAGTTCTGGCAACCAGCAGGTTTGGGCACAAGTGGAGTTTTAATAGTACCTCAGTGTTTCACAAACATGACAATAAGTGTAGGGGCTGCTTCTGCGTCCTGCTGGTTACTATAGAGTCTGAACAAAAGCAGTTGATTTAAGCACAGGGGAATGGCTCCAGCGACAAACCATGTTATTGACTCTGGGAAGCCAATGATGTCATTGTGATGTCAATGCCCTTAATTGTAATCCTACACATAGTTGCTGATTGGGGATCATTTCATGTTGAAAGCAGAGCGAGTGGGTTCCTCTTGGATTAACAAAAAAGAATATACATGGCTGTAACTGGGGATGAGACAGAGTCAGCCGCCACTGGTGACATGCCTACCTACCAGATCCGCACCCCGACATCGAGTTTGCCACAAGGGGTTGTGATGGCGGCGTCGCCCAGCTCCCTGCACAGCCCACAGCAGCTGGCCGAGGAAGCGACACGGAAGAGGGAACTCAGGCTCATGAAAAACAGGGAGGCTGCTCGGGAATGCCgcagaaagaagaaagaatacGTCAAATGTCTTGAAAATCGTGTGGCGGTGcttgaaaatcaaaacaagactCTCATTGAGGAACTTAAAGCTCTCAAAGACCTGTATTGCCATAAAACAGAATAACTACCACCTTGGTCTGGGAACCAAAAGACTTATAATAAAGGCATGAGAGGGTTCATTTTACAGACTGCTGTAAAGATTTGGGGCGAAAACAAATCTTCGTGTTGTGCTCCAGCTCGGCTTTTGGCTTAATACTTTTAAGAACTTTGTGAATTCTGTCCCAGCTCTTGGAAAGCAATTATGTCCATGTCCATCGTGAGAATCATGTCCAGCACTTTCTTTCACAGAGTTATTTAGCATGTGAATATTGCGTGTTGCCCCTGTCGCTTCTGCTCTTGCAGGCAGGCTGCCAAAGCGTGCCGCCGTCGGAAGAAGACCTATGTAAGCTGTCTGGAGAGTCGTCTTGAGATACTTGAAGTCCAGAACAAGAAGTTGACCGCTGAGCTTCAAAACCTGAAGAACATTTATTGtggaaaattgtattaatgtatccAAAATGGAATACAAGTTCAAACACTCTTTTGTTAACTGTTTAAATCAGACCTGCTTGTTTTGCGATGCTTTTCtcaactgcattattattattattattattattattattgttattattacattccTCTGTGTGGTTTTCAACTCCTGTAGAATATAAGATGTAAAGAACTAGTAGCTATAACACAAGAATGCCCaagttaatgcatttaaatgtgtccCATTGTCAAACACCAttatctgttttatatatacctTTTCAATGGACATTCTACagaccttttattatttttcaaagcagcCAGAAAAGTTGAAGCCAGTTTGACACGTGCTAGTGTGAATCGAACCCCAGCTTTTCTTTACACCCCAGTGCATCTCCTTTTATGTAAATGGGAAAGATCTGTTCTCTACCCCCCCACAGGCCTGGGTAGAGCATTTCAGGTCAGTACGGGATCTGAACAGAGACAGGTAAATGAGTGTCTAAGTACTGGCCTGCGGTAGATTTAAGATAAATCTATTTTGTGTACGACCAGCCAATTATATGTACCTCTGAGAGGATTTTTCTATTAAAGTGTTATTGacaatttattaaatatttagtttatatattttttggggggagatAATgttatacacactcacacacatacacataaagtgtgtatttatatatatgtagctGTACCTATTTTTGCTGATATTTCATATTGATGTTTCAGTCAggtataatgtaaatgtttgcaGAGTGGACGTGTTGTGGAAGAAAAGCAAGATGGTTAACCTGACTCCAGCTTAGCGTGAGTGTACAGACGTTTTGCGCCCCAATTAGAggcatttatattataataatacagagaaatgcagaaatgttCTTTGCTGCCTGAATAATGGCTGGGTTTTGCAGCCTTGTGTATCACATTGCTCTCGGTATGTCtctttgatttatgtttttaaaactgcatttctaTTAGTCTGATAAATCTGTTATGAAAAATGTGCCATTTCAGAAACCACTAGCATACGCTGGGAagactgaaattaataaaacattgaataagC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39304 lncRNA upstream 38115 3139687 ~ 3165672 (+) True G31380
TU39274 lncRNA upstream 126631 3076916 ~ 3077156 (+) True G31351
TU39148 lncRNA upstream 636809 2565509 ~ 2566978 (+) False AMCG00019089
TU39161 lncRNA upstream 636809 2565509 ~ 2566978 (+) False AMCG00019089
TU39092 lncRNA upstream 793900 2404126 ~ 2409887 (+) True G31217
TU39362 lncRNA downstream 134072 3344755 ~ 3345244 (+) True G31430
TU39364 lncRNA downstream 142657 3353340 ~ 3388685 (+) True G31432
TU39393 lncRNA downstream 653506 3864189 ~ 3864604 (+) True G31461
TU39435 lncRNA downstream 1156274 4366957 ~ 4368203 (+) False AMCG00019111
TU39503 lncRNA downstream 1536865 4747548 ~ 4747749 (+) True G31566
AMCG00019096 mRNA upstream 103616 3094452 ~ 3100171 (+) True AMCG00019096
AMCG00019095 mRNA upstream 353787 2845380 ~ 2850000 (+) True AMCG00019095
AMCG00019088 mRNA upstream 537923 2658553 ~ 2665864 (+) True AMCG00019088
AMCG00019090 mRNA upstream 567384 2619235 ~ 2636403 (+) True AMCG00019090
AMCG00019089 mRNA upstream 585735 2520104 ~ 2618052 (+) True AMCG00019089
AMCG00019101 mRNA downstream 46978 3257661 ~ 3275357 (+) True AMCG00019101
AMCG00019099 mRNA downstream 71477 3282160 ~ 3285119 (+) True AMCG00019099
AMCG00019104 mRNA downstream 421052 3631735 ~ 3635688 (+) True AMCG00019104
AMCG00019107 mRNA downstream 1037710 4248393 ~ 4249743 (+) True AMCG00019107
AMCG00019106 mRNA downstream 1057568 4268251 ~ 4282752 (+) True AMCG00019106
TU39281 other upstream 107361 3094478 ~ 3096426 (+) False AMCG00019096
TU38962 other upstream 1056224 2141830 ~ 2147563 (+) False G31110
TU38960 other upstream 1056224 2143921 ~ 2147563 (+) True G31110
TU38794 other upstream 1332408 1861829 ~ 1871379 (+) False AMCG00019064
TU38640 other upstream 1950052 1253366 ~ 1253735 (+) True G30877
TU40051 other downstream 4209818 7420501 ~ 7421083 (+) True G32005
TU40197 other downstream 5134772 8345455 ~ 8384592 (+) False G32130
TU40199 other downstream 5134772 8345455 ~ 8384592 (+) True G32130
TU40426 other downstream 6050691 9261374 ~ 9539211 (+) True G32286
TU40432 other downstream 6118796 9329479 ~ 9348819 (+) True AMCG00019215

Expression Profile