G28405


Basic Information

Item Value
gene id G28405
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 7149337 ~ 7150487 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU32132
GCCTGATATCATATTTGCTACATACATTTAAACATGAAGGGGTATTTTTACTGGCTAAAAAAAAAAAAATCGATCAGAGAGCAAAGTGCATGTAGTAGATTGTGTACAACAGGGATTGATTGAAAGCTATTTGGTTGTGACATTAAGAGGATTGAACAGAGTTCTCTGACAGTTTACCACACCAGCAGGACATGTGCAAATCTAAAACAATTTCTCTGATTAACAAGTCTGATGTGTTGGTATTGCTGTGATGTGGTATTGTGAATATGACAGTATGATAGTCATCTGTTTCGTCAGGTTGGTAAAACAATTAACAACTGCAGTGCAGTGGAGAAAGAGTAACAGTATTTGAAACCCTATATACATTTTTGTCTTGCCAGTGAAAAATAAGTAGCCTAAGTGCCAGGTTCTTATAAATGTACTCTTTGTATAAATATTGACTTCATATTTATAAATAAACTGTAAAAAGTGGTAACCTGCAATTGTTACCTTAAAGAGCTATTTCTACCTGATTTAACCTGATTAGTTTTGTTGGTATAAATTGATGCATGTTGATTGGTTCAGTGATGTTAAAAAAATTTTTTAACTTGAATAAAAGCAGTTAATTTAGATGTTACCATTTTTAGGTTATCATTTTTCCCCACCGTGTAGGCTATATACAATAGATTCATGAAACCTGAAGCGGCTGTAATGAATTGCGTTTCTTCTCACAGCCACGTGAGGGCGGCAGACATCTTTTAATACGAGTCCTCATTATGAATTAAACAAACTGTCCGGAGCAGACTGTAAGACATCTCTTTTGCTTATAAACCACTTTTACCATTTCGTAATATCTCGCGTAACTTCTGTTGTTCTGCTATTAGTTAATGAACAGTGTATTGTAAGCCTATTTCACAAATACGTCTCAGTTGTCACTGGAGCTGTCGAAATGATTCCACTTTGCACGTCAAAAATATATATTTCTCCCCCAAGTCTGAAAAACATTTGTGACTGTACAACAAGTGTTTACGTGTTGTCTGCTGTTGTCATGTAGTAATATTACAGCCTCTTTGTATCCGATAGAGAACAATGTGTGCGGGTGGCTTAGATAAGAACATGTAAAATATGAAATCAAATAACAGATTAAAGGGATAGTTCATCCAAAAATTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU32132 True 1151 lncRNA 0.53 1 7149337 7150487

Neighbor

gene id symbol gene type direction distance location
CI01000004_07084569_07087489 KLHL40A coding upstream 61239 7084379 ~ 7088098 (+)
CI01000004_07075959_07081717 HHATL, HHATLA coding upstream 67496 7074308 ~ 7081841 (+)
CI01000004_07043037_07053182 PLCD1B coding upstream 95596 7042393 ~ 7053741 (+)
CI01000004_06989955_07000066 NA coding upstream 149104 6989562 ~ 7000233 (+)
CI01000004_06973330_06975283 NA coding upstream 173522 6972779 ~ 6975815 (+)
CI01000004_07164273_07167923 BMI1B, BMI1 coding downstream 13786 7164273 ~ 7168236 (+)
CI01000004_07196152_07199384 NEBL coding downstream 45665 7196152 ~ 7199414 (+)
CI01000004_07249855_07250697 NRN1B coding downstream 99104 7249591 ~ 7251433 (+)
CI01000004_07254370_07254880 LYRM4 coding downstream 103883 7254370 ~ 7255602 (+)
CI01000004_07262498_07264843 RPP40 coding downstream 111786 7262273 ~ 7265593 (+)
G28583 NA non-coding upstream 11107 7137566 ~ 7138230 (+)
G28598 NA non-coding upstream 12177 7136504 ~ 7137160 (+)
G28596 NA non-coding upstream 14394 7134743 ~ 7134943 (+)
G28595 NA non-coding upstream 14649 7134475 ~ 7134688 (+)
G28574 NA non-coding upstream 50417 7098474 ~ 7098920 (+)
G28606 NA non-coding downstream 44562 7195049 ~ 7195652 (+)
G28634 NA non-coding downstream 98061 7248548 ~ 7248777 (+)
G28406 NA non-coding downstream 139154 7289641 ~ 7295398 (+)
G28647 NA non-coding downstream 146605 7297092 ~ 7297341 (+)
CI01000004_06571261_06572539 SEP15 other upstream 574916 6570771 ~ 6572667 (+)
G28302 NA other upstream 647250 6470028 ~ 6502087 (+)
G28165 NA other upstream 1416336 5732589 ~ 5733001 (+)
G27805 NA other upstream 1775534 5372825 ~ 5373803 (+)
CI01000004_03550525_03552621 PTGER4C other upstream 3596891 3550329 ~ 3553423 (+)
CI01000004_07654234_07655677 MRPL34 other downstream 504285 7654234 ~ 7656383 (+)
CI01000004_08414451_08436256 NA other downstream 1283218 8414316 ~ 8439933 (+)
G28859 NA other downstream 1448748 8599235 ~ 8599603 (+)
CI01000004_08976512_08980033 TTPA other downstream 1825951 8976254 ~ 8980984 (+)
G30797 NA other downstream 3346889 10497376 ~ 10497788 (+)

Expression


Co-expression Network