XLOC_016305 (tpra)


Basic Information

Item Value
gene id XLOC_016305
gene name tpra
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 20811677 ~ 20866758 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032142
ACTGCTAATGCTAGCTGTTGCAGTGAGCCGGAGAGATGGCGGCACTTCTTCAGCAAGCGCTGGAAAGAACCGAGGTCAACAAACTGCCGAAAGCCATTCAGAACAAGCTCGAGAAGGTTCTGGCAGAGCAGCAGACGGAAATCGACTCGTTGATATCACAGCATGAGCGGTATAAAGCAGACTGTGAGCAACAGTACTTTAATCTCGAGAAGAAGCTTGCTGAGAGTCAGGAGCAGTTTCTATCCCAAAGTAAGGACTACCACAATATTAAGGAGGAAAACAACCGTCTTGTGGAAGAGCTTAAGAAGTTAAAAGAGATAGAAGAAGTGCAGGGAACAACGCAAGAGAGTAAGCCTCCTAGAGCCAAATATGAAATCGAGGCAGAAAACCGAGAGCTGTCACGATTGCTTGAGAAGAGATCTCAAGAAGTGGAAAACCTCAGTGAGGATCTCAAACGTCTCAATGACAAACTTGTGGAGACCAACACAATCAAGATGGAGCTCCAGCTTAAACTAGATGAACTTCAGTCTTCTGAGGTTTCCATTCAGTATCGTGAGAAGCGGATGGAACAAGAAAAAGAGCTTCTCCAGAACCAGAACACATGGCTGAACACAGAGCTGAAGAGTAAGACGGATGAGCTGTACACCGTATCCAGAGACAAAGGCAAAGAGAACCTGGAGCTTAGGTGTTCTTTAGAGAGCAAGAAGGAAGAGGTGACCAGACTTCAGGATCAAGTAAACACACTCAAGAAAGCAAATGACAGCATGCAGAAGAGTACAGAGGATCTGATGAGGAAGCTAAAAGAGGCTAAAGAACAACGGGCCTCAATGGAAGAGAAGTACCGCAATGAGCTGAATGCAAACCTCAAACTATGTAATTTGTACAAGGGTGCAGCATCAGATTCTGAAGCCAagaacactgaactgaacagagCTGTGGAAGAGCTCAATAAACTGCTGAAGGAAGCAATGGAAGCCAATAAAGGAACCGAGAAGAAGCTGTCAGAGTTGCAGAGCGTAAGGGAGAAAGCAGAGTCAGATTTACGTGAGAAGGTTAGGCATCTGGAGAAGGAGCTGGAGAACTCCAACACAAGGCTCGCAGACTTTAAGAGGAGAGGTGTTCCAGCTCTCACAGAAGAGGAGCTGACAAACCTTTCTCCAACTGCAGCGGCAGTGGCCAAGATCGTGAAGCCGGGCATGAAGCTAATGGAGTTGTACAATGCCTTTGTGGAGGCACAAGACCAGCTGCACCTTGAGAAGTTGGAGAACAAGCGTGTGAACAAGGTCCTTGATGAGATCGTGCTGGAGGTGGAAACCAAAGCTCCCATCCTGAAACGCCAGAGAGAGGAATATGAGAGCATGCAGAAGTCTATGACCAGTCTCTGTTATAAACTAGAGCAAGCTATGAAGGAGGTCCATCGGCTACAAAAAGAAACGGATGAAGCCAATAAGAGAGCTTTAGTGCTTGAAAGAGATAATCAGAAATCAGAGAGACAGCTAGCCGACATGTCTGAGCAGGTGCGTGTGCTTCTGGTGGAGGTGGAGGAGGCACGTGGTAATCAGGTAGTGCGTGAGGATGTGAGTTCTGCTGTGAGCAGTAGCTCTGAGGTCCAGGGTTCACGACAGGTGGCATTCCGCAGCATCCAAGAGCTTCAGCAGCAGAACCAGAACTTACTGGTCAAGATCAGAGACCTGGAAGAGCAGAGAGAAAAAGACCAGAACCAGGCTAAGAGTGCAAAGCAAACAGAATTGGAACAAAGTCTGGAGAAGGTTCAGAAGGAGCTGGAGCAGATCAAGGAACAGCAAAACCATCAGAAGCTGCTGGCTGAATCTGCCATCCGCCAGAGAGACATGTACCGTATCCTTTTGCAGACAGCCGGAGTCGAGCTTCCACCACAGGGTTCAGATGGTGGATCTCAATCCACTACTCCCAGCAGGCCAGGACCCATGGCCACTAGATCCACACCACTAAGGGCTGCTGCTGCAGAATCTTTCCAGGCAACCCAGTCTAAAGCAGCACTTAAACAGATAAATGATGCCTTTACTACATATAAAAAGGAGAAGGCCGAAAATGACAAGCTTCTAAATGAGCAGATTGAGAGGCTTCGTGGTCAAGTGTCTGACCTGCTCTCACAAAAGGCCAAACTGTCCTCTCAGCTGGAGTTTGCCTCTAAACGGTATGATATGCTTCAGGAGAATGTGAATGGCTTTCGAAGAGAGACTGAAGCCCTGCGGGAGAGGAATCAAAAGATGTCTGCCACCCATCAGAGACATGAGCAAATCATTCACACAATGACTCAAGACCTGAGGGAGGCCAATGAGAAACTGACCATGTCCGAGTCGCGGGCTGAAAACATCCGTAAGGAACGAGACATTCTGAAACAGGTGGAAAACAGACTCAACCAGGAGAAAGAGTCTATCCTGACTGAACAGCGGAGCCAGAACCTTCTGCTCACCAACCTCAAATCCATTCAGCTCACCATGGAGCGCTCTGAAACTGAGACCAAACAGCGCTACAATAATCAAATCCAGCATCTGGAAAAGGAGATTATCCAGTTAAAGAAGAGGCTGGAGCAAGAAGTGGAACAGAGACACGCACTGGAACGCAACCAAGATACTCAGCTGTTGGAGGCTAAGAAGAAGCTGGAGTCACAGACCGCACTACACCAGAAGACTAAAGAGCTGCTGAGATCTGCTGAACAGCAGGTGACCTCTTTGAGACAGCAACTGAACAACAATGAGAATCAGAGTGCAGCACCTAAGCAGCCTGTCAGGACATTACCCAGAGTTTCAGCTCCCAGCGTTCCTCAACAGGAGGCAGATGATCTTCGTGCACGTCTACAGCAGGTCGAGGAACAGAACTCTGACCTGAAAGAACGCTTGAAGAACACCACCACCAATGTAGAGCAGTATAGATCTATGGTGCTCAGCTTGGAGGAGTCTGTGAACAAGGAGAAACAGTTGGCTGAGCAAGCACGGACCTCCACTGACAACCAACTGAAGATGGCTCGGGAGTTGAATCAGCAGCTGGAAGCCCGTTTGGTGGAAGCGGAGAAGGAGAAGTTGGAGCTCCAGCAGGAGAAGATGAAAGCTGTGGATAGTGTTGAAGAACGGGTGAAGGAGCTGAAAAGGAGCATGACAAATATGCAGACTGAGCTTCAGGAAGCTCTGCAGAGATCTACAGCAGCAGTCACTCAGGAGCAGAAAGCCACACAGGACAGCAAAGTACAGGCTAAGCTGGCTGCAGAGGCTCAGAATAAATacgagcgagagctcatgctgcATGCTGCAGATGTGGAAGCCCTGCAGGCCGCCAAGAAACAGGGACAGCTTTTAACACAAAACATGAAGCAGCTCGAGGAGAAAGCTCAGAAAGCTGCATCTGAACTGCATCAGTACCGCACAGACTGGGTAATGCAGGAGAAGAGACTAAAGgaaacGCTTTCTAAAGAGCAGAAGAGAGCCGAGGAGCTGCAGAAGCAGAACACTTTGCTCCATGAGCAGATGGAGAACTTGAGCAGCAAGATCACTGCCTCAACCCAGCAGGAGACTGGAGAGAGCAGTCTGAACATCTCTCTGAACGAGGAGGGCAAGTCTCATGAGCAGATACTGGACATCCTCAGGTTTGTCCGGCGGGAGAAGGAGATTGCAGAGACCCGACTGGAAGTGGCCGAGGTGGAGACCCTTCGCTACAAACAGCGCATGGAGTATCTGGAGTGCGAGCTGAAGGAACTACAGGACAGCCTGAATGTAGAGAGAGAGAAGTTGCAGGTGACAACAAAGACCTTGGTACAGCAGGAAGAGACGATGAAGAGGATGGAGAGCATGAGTGCTCTTACAGATACCAACAAAATGCTGAAAAATGAGAAAAATCGACTGGAGCATGAGCTGCAGCAGACTCAGGCCAAGATGCGTAAGCTCGAAGCAGACATCAAGCCTCTGCAGGAGGCCAATGGTGAGCTGAGTGAGAAGAGTGGCATGTTACAGGCTGAGAAGAGGCTTCTGGAGGAGGATGTCAAGCGCTTGAAGTCTCGCACACAGCAACTCTTGAATCAGCAGAAGGACAGCGATCAGGAGGAAAGCAAGAAGCTTCATTCTGAGAGAGAGACTCATCTTAAACGCATCCAGCAGCTCACAGAGGAGACTGGCAAACTGAAGAATGAGGTGGCCCGGAGCCAAGCTTCAATCACCACGGCTCAGAGCCAAGTGCAGAACCTGCAAGACAGTCTGGGGAAGGTCACCACTGAACGAGACAGTCTGAAGAAGGAGCTGGAGGCAAAAACACTGGACATCCAGGAGAAAGTCAAAACCATCACGCAGGTCAAGAAAATCGGCCGTCGCTACAAAACCCAGTATGAAGAGCTCAAAGAACAGCATGATAAGATGGTGGCAGAGGCTGCTTCTAAACCAGCCCAGGAGCAGGAAGACCGTCAGGCCTCAGTGCAGGAGATTCAGAACCTGAAGAGCTCATTGAGTCAGACACAGAATCGAACCTCAGAGCTGGAAACTCAGCTGGACTGCATACAGAAGACGTTGCAGGAGCGTGAAGCAGAGGTGAAGAGCCTACAGGAACAGCTGACACAAGTGCAGCCTGAGCTCAGCCGTCTAAAAGCAGAACTGCAGGAGAAGGGCAAACTGGAGGAGCAGCTCCGACAGCAGATCGCTGATAAAGAGGAGAAGACCAAGAAAGCCTTCTTGGGGGCCAAACAGAAGCTCAACCAGCTCAACAGTGCAAAGGAGCAGCTGGCGAAAGAAAACGAGGAGCTGAAGCTGCAGCGAGAGGAGCTGGAGGTGAGGATGAGTGCACTGAAGTCTCAATATGAAGGTCGACTTAGCCGACAAGAACGAGAGCTGAGGGAACTTCGTGAACAGCAGGAGAGACATGGAGAACAGAGAGATGAAGCTCAGGAGCCTGGCCAGAGCAAGgtTCAAGAGGCACCGAGGTCATCAGATGCTCGTCAGATCACACTCAAGCCTACGCCTGCTGCTGACAGAGGAAGTGTTGTTTATTCTTTTTTCCAAATTTCTTCTATTAAAAGTGCAAGTCAGTCTGAACCACCCACTGCCAACATCAAGCCCACGTTAGTTGCCGCCACCCCTAGCAAGCCTTCACCAATCGCAGGCAGCAAGTCCACTCCTAAAGCAAGCATCCGTCCAATGATAACGCCTGCTCCTGTTACCACACCCACAGCCACAGTCATGCCCACCACACAGGTTGAAACGCAGGAAGCTCTACAATCCACAGAGGGTCCGCTGGAGCATGTGACTGTGTTTGGCAGCACCAGTGGCTCAGTGCGCTCCACCAGCCCAAACATACAGACCACACAGCCAATCCTCAGCCTGCAGCAGAGCCAAGCCACTGCCTTCGTCCAGCCCACTCAGCAGCAGGCCAGCCAGGAACCAGCAACCAGCATTATGGAAGCGGTGCATAGCTCTCAGATGGAGAGGCCCTCCACCTCCACCGCTGTCTTTGGTACAGTTTCTGCAACAACGGGTTCTTCGGTGGCCAAGCGAGTGCGAGAGGAGCATGAGGAGAGCTCCACTGAGGTGACGGACACCACACAGGATGACTCTACACATCCACCCATCATGAAGAAGCTCCGCATTGTAAGAAGAGTGGGTCTGGAGGATGCTTCAGGTACTGAGGAGAGTAATGATGCTATGGGTGAATCTTCAGGAGACGTTCAGCAGCCTCCTGATGCCAGTGAGGAAGCCTATCCCGTATTAGGAGAGGGGGATGAAGAATCATTGTCTGCCCCCATGGATCAGGTGAGTGAGTCTCAACCCTCTGAGTCTCAGATCAGTGGACAGGACTCATCAGAAGAGTACAAGCATGATGTAATCGTCATCGAAACAGACAGCGccactgaggaggaggaggaagaggaagaggagcaGGAAGAACCTGGACAGtatgaagatgatgatgaggatgaggacGATGACGCagaagatgaggatgatgaagatgggGATGGAGGAATGGCTGAAGCAGCAGAGGAGAGTAATGAAGGCAGTGGGAGTGCAGATGCCAATGAGGCTTATGAGGGGGATGAGGCAGAGCAGGGTGCCGGGGAAGCTGATCCAAGTGTTCACAATGAAGAGAGTCAAGAGGCATCTGATTCAACCCAGAAGCAACCAGACTCTCAGAGCAGTGAAGCTAGTGTCAGCACCCTGGAGGCCTTCCCTCTTGAGCCTGTAAGAGAGCACCCGCCGCTGCCCAGCACTACCACCACCTCCCTCGCCCCGCGTCTGCCCCAATCCCCCCGTAGACCACATCACACCCCTCCACCTCGTCTTAATATCCACCCTGTCCCTGAACTTGGACCTCCTATCATGCAGAGGCAGTCTGGACAGAGCAGACGACCATCAATGAGTCGCGCACCGCAGCTTACGCCCGGTATTGGAAGCATGCAACACTTCTTTGATGACGATGACAGAATGGTTCCCAGCACTCCCACTCTTGTGGTGCCACACCGCACAGATGGCTTTGCGGAGGCCATTCATTCCCCTCAGGTGGCTGGAGTTCCTCGCTTCCGTTTCGGCCCCCCAGAGGACATGATGCCTCAGGCCAGCTCTTCTCATTCTGACCTGAGCCATCTGGCCACACATGGAGGACTGGGCATGTATGAAAGTCCACTGTTCCTGCCCACTCATGATGAGGAGTCTGGAGGCAGGAGTGTGCCCACCACCCCTCTACAAGTGGCCGCTCCAGTGACCGTGTTCACCGAAAGTCACCCGTCGGATGTTTCGGAGACGGCCTCTCAGTCAGTGCCCATGGTAAGCACATCCACCGCCAGCCTGAGTGCACCAGGAGAGGCTGTGCCAGGAGATGATGGAGATGACGTGTTCGTGGCTGAGGCTGAGAGCGAAGGGGTGAGTAGTGAAGCGTGTCTAGAAAGCCAGTTGGAGCTAGATTCTGCACAACCGGCTGATGATGCCAGTCTTCCCTCCACCAGTCAAGAGCCTACGTCTAGTTCTGCAGACACTAGCACCAGTAGCGGTCAGGCTAAACCCGCAGGCCGTCTGCTTCCTCAGCACCATCTGCCCCGGAGAAACCAGCTGATCCGGAGAGGTTTTCCTCGTGGAGGTCGGGGTCGAGGGCTCAGCAGAGGCTCCCCTTTCTAAATCCAGCTGCATTTCCAGCGTCTGCCCGGCAGAAACACTGAGCTCACATCCGTGACTCTTCAAAACCATCAGCTCACTgctgttttatgtttaatgtttGGTTTCAGTGTGCTTGAAATCATTGCTTTagatttgttattttatattttgtgagTAATCATCCTGATGctatgttttgctaataaatggAGAATCATTCTCGCAGA

Function

symbol description
tpra Predicted to be a structural constituent of nuclear pore. Predicted to be involved in mRNA export from nucleus and regulation of mitotic spindle assembly. Predicted to act upstream of or within protein import into nucleus. Predicted to be located in nucleus. Predicted to be part of nuclear pore. Orthologous to human TPR (translocated promoter region, nuclear basket protein).

GO:

id name namespace
GO:0006606 protein import into nucleus biological_process
GO:0006406 mRNA export from nucleus biological_process
GO:1901673 regulation of mitotic spindle assembly biological_process
GO:0005643 nuclear pore cellular_component
GO:0017056 structural constituent of nuclear pore molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081104-2 Predicted to be a structural constituent of nuclear pore. Predicted to be involved in mRNA export from nucleus and regulation of mitotic spindle assembly. Predicted to act upstream of or within protein import into nucleus. Predicted to be located in nucleus. Predicted to be part of nuclear pore. Orthologous to human TPR (translocated promoter region, nuclear basket protein).

Ensembl:

ensembl_id ENSDARG00000103004

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032142 True 7333 mRNA 0.51 51 20811677 20866758

Neighbor

gene id symbol gene type direction distance location
XLOC_016304 CABZ01020455.1 coding downstream 22979 20763289 ~ 20788698 (-)
XLOC_016303 FO681336.1 coding downstream 53978 20757582 ~ 20757699 (-)
XLOC_016301 dusp12 coding downstream 96583 20658259 ~ 20715094 (-)
XLOC_016302 AL954134.1 coding downstream 107154 20699481 ~ 20704523 (-)
XLOC_016300 si:ch211-267e7.3 coding downstream 212362 20555394 ~ 20599315 (-)
XLOC_016306 pdca coding upstream 16196 20882954 ~ 20890429 (-)
XLOC_016307 ptgs2a coding upstream 49739 20916497 ~ 20923864 (-)
XLOC_016308 lyrm4 coding upstream 113404 20980162 ~ 20981907 (-)
XLOC_016309 nrn1b coding upstream 125227 20991985 ~ 20994126 (-)
XLOC_016310 nebl coding upstream 209827 21076585 ~ 21082695 (-)
XLOC_016298 NA non-coding downstream 348754 20453614 ~ 20462923 (-)
XLOC_016299 NA non-coding downstream 352668 20457947 ~ 20459009 (-)
XLOC_016295 NA non-coding downstream 663308 20124994 ~ 20148369 (-)
XLOC_016311 NA non-coding upstream 255430 21122188 ~ 21124115 (-)
XLOC_016313 NA non-coding upstream 328770 21195528 ~ 21208559 (-)
XLOC_016314 CU464125.1 non-coding upstream 445984 21312742 ~ 21320684 (-)
XLOC_016316 NA non-coding upstream 514567 21381325 ~ 21383394 (-)
XLOC_016318 NA non-coding upstream 674848 21541606 ~ 21542043 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_05942638_05967553 TPRA coding CI01000004 null 5942604 ~ 5967553 (-)