RNA id: TCONS_00032142


Basic Information

Item Value
RNA id TCONS_00032142
length 7333
RNA type mRNA
GC content 0.51
exon number 51
gene id XLOC_016305
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 20811677 ~ 20866758 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTGCTAATGCTAGCTGTTGCAGTGAGCCGGAGAGATGGCGGCACTTCTTCAGCAAGCGCTGGAAAGAACCGAGGTCAACAAACTGCCGAAAGCCATTCAGAACAAGCTCGAGAAGGTTCTGGCAGAGCAGCAGACGGAAATCGACTCGTTGATATCACAGCATGAGCGGTATAAAGCAGACTGTGAGCAACAGTACTTTAATCTCGAGAAGAAGCTTGCTGAGAGTCAGGAGCAGTTTCTATCCCAAAGTAAGGACTACCACAATATTAAGGAGGAAAACAACCGTCTTGTGGAAGAGCTTAAGAAGTTAAAAGAGATAGAAGAAGTGCAGGGAACAACGCAAGAGAGTAAGCCTCCTAGAGCCAAATATGAAATCGAGGCAGAAAACCGAGAGCTGTCACGATTGCTTGAGAAGAGATCTCAAGAAGTGGAAAACCTCAGTGAGGATCTCAAACGTCTCAATGACAAACTTGTGGAGACCAACACAATCAAGATGGAGCTCCAGCTTAAACTAGATGAACTTCAGTCTTCTGAGGTTTCCATTCAGTATCGTGAGAAGCGGATGGAACAAGAAAAAGAGCTTCTCCAGAACCAGAACACATGGCTGAACACAGAGCTGAAGAGTAAGACGGATGAGCTGTACACCGTATCCAGAGACAAAGGCAAAGAGAACCTGGAGCTTAGGTGTTCTTTAGAGAGCAAGAAGGAAGAGGTGACCAGACTTCAGGATCAAGTAAACACACTCAAGAAAGCAAATGACAGCATGCAGAAGAGTACAGAGGATCTGATGAGGAAGCTAAAAGAGGCTAAAGAACAACGGGCCTCAATGGAAGAGAAGTACCGCAATGAGCTGAATGCAAACCTCAAACTATGTAATTTGTACAAGGGTGCAGCATCAGATTCTGAAGCCAagaacactgaactgaacagagCTGTGGAAGAGCTCAATAAACTGCTGAAGGAAGCAATGGAAGCCAATAAAGGAACCGAGAAGAAGCTGTCAGAGTTGCAGAGCGTAAGGGAGAAAGCAGAGTCAGATTTACGTGAGAAGGTTAGGCATCTGGAGAAGGAGCTGGAGAACTCCAACACAAGGCTCGCAGACTTTAAGAGGAGAGGTGTTCCAGCTCTCACAGAAGAGGAGCTGACAAACCTTTCTCCAACTGCAGCGGCAGTGGCCAAGATCGTGAAGCCGGGCATGAAGCTAATGGAGTTGTACAATGCCTTTGTGGAGGCACAAGACCAGCTGCACCTTGAGAAGTTGGAGAACAAGCGTGTGAACAAGGTCCTTGATGAGATCGTGCTGGAGGTGGAAACCAAAGCTCCCATCCTGAAACGCCAGAGAGAGGAATATGAGAGCATGCAGAAGTCTATGACCAGTCTCTGTTATAAACTAGAGCAAGCTATGAAGGAGGTCCATCGGCTACAAAAAGAAACGGATGAAGCCAATAAGAGAGCTTTAGTGCTTGAAAGAGATAATCAGAAATCAGAGAGACAGCTAGCCGACATGTCTGAGCAGGTGCGTGTGCTTCTGGTGGAGGTGGAGGAGGCACGTGGTAATCAGGTAGTGCGTGAGGATGTGAGTTCTGCTGTGAGCAGTAGCTCTGAGGTCCAGGGTTCACGACAGGTGGCATTCCGCAGCATCCAAGAGCTTCAGCAGCAGAACCAGAACTTACTGGTCAAGATCAGAGACCTGGAAGAGCAGAGAGAAAAAGACCAGAACCAGGCTAAGAGTGCAAAGCAAACAGAATTGGAACAAAGTCTGGAGAAGGTTCAGAAGGAGCTGGAGCAGATCAAGGAACAGCAAAACCATCAGAAGCTGCTGGCTGAATCTGCCATCCGCCAGAGAGACATGTACCGTATCCTTTTGCAGACAGCCGGAGTCGAGCTTCCACCACAGGGTTCAGATGGTGGATCTCAATCCACTACTCCCAGCAGGCCAGGACCCATGGCCACTAGATCCACACCACTAAGGGCTGCTGCTGCAGAATCTTTCCAGGCAACCCAGTCTAAAGCAGCACTTAAACAGATAAATGATGCCTTTACTACATATAAAAAGGAGAAGGCCGAAAATGACAAGCTTCTAAATGAGCAGATTGAGAGGCTTCGTGGTCAAGTGTCTGACCTGCTCTCACAAAAGGCCAAACTGTCCTCTCAGCTGGAGTTTGCCTCTAAACGGTATGATATGCTTCAGGAGAATGTGAATGGCTTTCGAAGAGAGACTGAAGCCCTGCGGGAGAGGAATCAAAAGATGTCTGCCACCCATCAGAGACATGAGCAAATCATTCACACAATGACTCAAGACCTGAGGGAGGCCAATGAGAAACTGACCATGTCCGAGTCGCGGGCTGAAAACATCCGTAAGGAACGAGACATTCTGAAACAGGTGGAAAACAGACTCAACCAGGAGAAAGAGTCTATCCTGACTGAACAGCGGAGCCAGAACCTTCTGCTCACCAACCTCAAATCCATTCAGCTCACCATGGAGCGCTCTGAAACTGAGACCAAACAGCGCTACAATAATCAAATCCAGCATCTGGAAAAGGAGATTATCCAGTTAAAGAAGAGGCTGGAGCAAGAAGTGGAACAGAGACACGCACTGGAACGCAACCAAGATACTCAGCTGTTGGAGGCTAAGAAGAAGCTGGAGTCACAGACCGCACTACACCAGAAGACTAAAGAGCTGCTGAGATCTGCTGAACAGCAGGTGACCTCTTTGAGACAGCAACTGAACAACAATGAGAATCAGAGTGCAGCACCTAAGCAGCCTGTCAGGACATTACCCAGAGTTTCAGCTCCCAGCGTTCCTCAACAGGAGGCAGATGATCTTCGTGCACGTCTACAGCAGGTCGAGGAACAGAACTCTGACCTGAAAGAACGCTTGAAGAACACCACCACCAATGTAGAGCAGTATAGATCTATGGTGCTCAGCTTGGAGGAGTCTGTGAACAAGGAGAAACAGTTGGCTGAGCAAGCACGGACCTCCACTGACAACCAACTGAAGATGGCTCGGGAGTTGAATCAGCAGCTGGAAGCCCGTTTGGTGGAAGCGGAGAAGGAGAAGTTGGAGCTCCAGCAGGAGAAGATGAAAGCTGTGGATAGTGTTGAAGAACGGGTGAAGGAGCTGAAAAGGAGCATGACAAATATGCAGACTGAGCTTCAGGAAGCTCTGCAGAGATCTACAGCAGCAGTCACTCAGGAGCAGAAAGCCACACAGGACAGCAAAGTACAGGCTAAGCTGGCTGCAGAGGCTCAGAATAAATacgagcgagagctcatgctgcATGCTGCAGATGTGGAAGCCCTGCAGGCCGCCAAGAAACAGGGACAGCTTTTAACACAAAACATGAAGCAGCTCGAGGAGAAAGCTCAGAAAGCTGCATCTGAACTGCATCAGTACCGCACAGACTGGGTAATGCAGGAGAAGAGACTAAAGgaaacGCTTTCTAAAGAGCAGAAGAGAGCCGAGGAGCTGCAGAAGCAGAACACTTTGCTCCATGAGCAGATGGAGAACTTGAGCAGCAAGATCACTGCCTCAACCCAGCAGGAGACTGGAGAGAGCAGTCTGAACATCTCTCTGAACGAGGAGGGCAAGTCTCATGAGCAGATACTGGACATCCTCAGGTTTGTCCGGCGGGAGAAGGAGATTGCAGAGACCCGACTGGAAGTGGCCGAGGTGGAGACCCTTCGCTACAAACAGCGCATGGAGTATCTGGAGTGCGAGCTGAAGGAACTACAGGACAGCCTGAATGTAGAGAGAGAGAAGTTGCAGGTGACAACAAAGACCTTGGTACAGCAGGAAGAGACGATGAAGAGGATGGAGAGCATGAGTGCTCTTACAGATACCAACAAAATGCTGAAAAATGAGAAAAATCGACTGGAGCATGAGCTGCAGCAGACTCAGGCCAAGATGCGTAAGCTCGAAGCAGACATCAAGCCTCTGCAGGAGGCCAATGGTGAGCTGAGTGAGAAGAGTGGCATGTTACAGGCTGAGAAGAGGCTTCTGGAGGAGGATGTCAAGCGCTTGAAGTCTCGCACACAGCAACTCTTGAATCAGCAGAAGGACAGCGATCAGGAGGAAAGCAAGAAGCTTCATTCTGAGAGAGAGACTCATCTTAAACGCATCCAGCAGCTCACAGAGGAGACTGGCAAACTGAAGAATGAGGTGGCCCGGAGCCAAGCTTCAATCACCACGGCTCAGAGCCAAGTGCAGAACCTGCAAGACAGTCTGGGGAAGGTCACCACTGAACGAGACAGTCTGAAGAAGGAGCTGGAGGCAAAAACACTGGACATCCAGGAGAAAGTCAAAACCATCACGCAGGTCAAGAAAATCGGCCGTCGCTACAAAACCCAGTATGAAGAGCTCAAAGAACAGCATGATAAGATGGTGGCAGAGGCTGCTTCTAAACCAGCCCAGGAGCAGGAAGACCGTCAGGCCTCAGTGCAGGAGATTCAGAACCTGAAGAGCTCATTGAGTCAGACACAGAATCGAACCTCAGAGCTGGAAACTCAGCTGGACTGCATACAGAAGACGTTGCAGGAGCGTGAAGCAGAGGTGAAGAGCCTACAGGAACAGCTGACACAAGTGCAGCCTGAGCTCAGCCGTCTAAAAGCAGAACTGCAGGAGAAGGGCAAACTGGAGGAGCAGCTCCGACAGCAGATCGCTGATAAAGAGGAGAAGACCAAGAAAGCCTTCTTGGGGGCCAAACAGAAGCTCAACCAGCTCAACAGTGCAAAGGAGCAGCTGGCGAAAGAAAACGAGGAGCTGAAGCTGCAGCGAGAGGAGCTGGAGGTGAGGATGAGTGCACTGAAGTCTCAATATGAAGGTCGACTTAGCCGACAAGAACGAGAGCTGAGGGAACTTCGTGAACAGCAGGAGAGACATGGAGAACAGAGAGATGAAGCTCAGGAGCCTGGCCAGAGCAAGgtTCAAGAGGCACCGAGGTCATCAGATGCTCGTCAGATCACACTCAAGCCTACGCCTGCTGCTGACAGAGGAAGTGTTGTTTATTCTTTTTTCCAAATTTCTTCTATTAAAAGTGCAAGTCAGTCTGAACCACCCACTGCCAACATCAAGCCCACGTTAGTTGCCGCCACCCCTAGCAAGCCTTCACCAATCGCAGGCAGCAAGTCCACTCCTAAAGCAAGCATCCGTCCAATGATAACGCCTGCTCCTGTTACCACACCCACAGCCACAGTCATGCCCACCACACAGGTTGAAACGCAGGAAGCTCTACAATCCACAGAGGGTCCGCTGGAGCATGTGACTGTGTTTGGCAGCACCAGTGGCTCAGTGCGCTCCACCAGCCCAAACATACAGACCACACAGCCAATCCTCAGCCTGCAGCAGAGCCAAGCCACTGCCTTCGTCCAGCCCACTCAGCAGCAGGCCAGCCAGGAACCAGCAACCAGCATTATGGAAGCGGTGCATAGCTCTCAGATGGAGAGGCCCTCCACCTCCACCGCTGTCTTTGGTACAGTTTCTGCAACAACGGGTTCTTCGGTGGCCAAGCGAGTGCGAGAGGAGCATGAGGAGAGCTCCACTGAGGTGACGGACACCACACAGGATGACTCTACACATCCACCCATCATGAAGAAGCTCCGCATTGTAAGAAGAGTGGGTCTGGAGGATGCTTCAGGTACTGAGGAGAGTAATGATGCTATGGGTGAATCTTCAGGAGACGTTCAGCAGCCTCCTGATGCCAGTGAGGAAGCCTATCCCGTATTAGGAGAGGGGGATGAAGAATCATTGTCTGCCCCCATGGATCAGGTGAGTGAGTCTCAACCCTCTGAGTCTCAGATCAGTGGACAGGACTCATCAGAAGAGTACAAGCATGATGTAATCGTCATCGAAACAGACAGCGccactgaggaggaggaggaagaggaagaggagcaGGAAGAACCTGGACAGtatgaagatgatgatgaggatgaggacGATGACGCagaagatgaggatgatgaagatgggGATGGAGGAATGGCTGAAGCAGCAGAGGAGAGTAATGAAGGCAGTGGGAGTGCAGATGCCAATGAGGCTTATGAGGGGGATGAGGCAGAGCAGGGTGCCGGGGAAGCTGATCCAAGTGTTCACAATGAAGAGAGTCAAGAGGCATCTGATTCAACCCAGAAGCAACCAGACTCTCAGAGCAGTGAAGCTAGTGTCAGCACCCTGGAGGCCTTCCCTCTTGAGCCTGTAAGAGAGCACCCGCCGCTGCCCAGCACTACCACCACCTCCCTCGCCCCGCGTCTGCCCCAATCCCCCCGTAGACCACATCACACCCCTCCACCTCGTCTTAATATCCACCCTGTCCCTGAACTTGGACCTCCTATCATGCAGAGGCAGTCTGGACAGAGCAGACGACCATCAATGAGTCGCGCACCGCAGCTTACGCCCGGTATTGGAAGCATGCAACACTTCTTTGATGACGATGACAGAATGGTTCCCAGCACTCCCACTCTTGTGGTGCCACACCGCACAGATGGCTTTGCGGAGGCCATTCATTCCCCTCAGGTGGCTGGAGTTCCTCGCTTCCGTTTCGGCCCCCCAGAGGACATGATGCCTCAGGCCAGCTCTTCTCATTCTGACCTGAGCCATCTGGCCACACATGGAGGACTGGGCATGTATGAAAGTCCACTGTTCCTGCCCACTCATGATGAGGAGTCTGGAGGCAGGAGTGTGCCCACCACCCCTCTACAAGTGGCCGCTCCAGTGACCGTGTTCACCGAAAGTCACCCGTCGGATGTTTCGGAGACGGCCTCTCAGTCAGTGCCCATGGTAAGCACATCCACCGCCAGCCTGAGTGCACCAGGAGAGGCTGTGCCAGGAGATGATGGAGATGACGTGTTCGTGGCTGAGGCTGAGAGCGAAGGGGTGAGTAGTGAAGCGTGTCTAGAAAGCCAGTTGGAGCTAGATTCTGCACAACCGGCTGATGATGCCAGTCTTCCCTCCACCAGTCAAGAGCCTACGTCTAGTTCTGCAGACACTAGCACCAGTAGCGGTCAGGCTAAACCCGCAGGCCGTCTGCTTCCTCAGCACCATCTGCCCCGGAGAAACCAGCTGATCCGGAGAGGTTTTCCTCGTGGAGGTCGGGGTCGAGGGCTCAGCAGAGGCTCCCCTTTCTAAATCCAGCTGCATTTCCAGCGTCTGCCCGGCAGAAACACTGAGCTCACATCCGTGACTCTTCAAAACCATCAGCTCACTgctgttttatgtttaatgtttGGTTTCAGTGTGCTTGAAATCATTGCTTTagatttgttattttatattttgtgagTAATCATCCTGATGctatgttttgctaataaatggAGAATCATTCTCGCAGA

Function

GO:

id name namespace
GO:0006606 protein import into nucleus biological_process
GO:0006406 mRNA export from nucleus biological_process
GO:1901673 regulation of mitotic spindle assembly biological_process
GO:0005643 nuclear pore cellular_component
GO:0017056 structural constituent of nuclear pore molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081104-2 Predicted to be a structural constituent of nuclear pore. Predicted to be involved in mRNA export from nucleus and regulation of mitotic spindle assembly. Predicted to act upstream of or within protein import into nucleus. Predicted to be located in nucleus. Predicted to be part of nuclear pore. Orthologous to human TPR (translocated promoter region, nuclear basket protein).

Ensembl:

ensembl_id ENSDART00000165374

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033361 lncRNA downstream 348754 20453614 ~ 20462923 (-) False XLOC_016298
TCONS_00033362 lncRNA downstream 348768 20456287 ~ 20462909 (-) True XLOC_016298
TCONS_00033363 lncRNA downstream 352668 20457947 ~ 20459009 (-) True XLOC_016299
TCONS_00033803 lncRNA downstream 663308 20144257 ~ 20148369 (-) False XLOC_016295
TCONS_00033801 lncRNA downstream 663319 20124994 ~ 20148358 (-) False XLOC_016295
TCONS_00032145 lncRNA upstream 52413 20919171 ~ 20920335 (-) True XLOC_016307
TCONS_00033804 lncRNA upstream 255430 21122188 ~ 21124115 (-) True XLOC_016311
TCONS_00032151 lncRNA upstream 299047 21165805 ~ 21166754 (-) True XLOC_016312
TCONS_00033805 lncRNA upstream 328770 21195528 ~ 21197037 (-) False XLOC_016313
TCONS_00033806 lncRNA upstream 328770 21195528 ~ 21208559 (-) False XLOC_016313
TCONS_00032141 mRNA downstream 22979 20763289 ~ 20788698 (-) True XLOC_016304
TCONS_00032135 mRNA downstream 96583 20662359 ~ 20715094 (-) True XLOC_016301
TCONS_00032131 mRNA downstream 144676 20658259 ~ 20667001 (-) False XLOC_016301
TCONS_00032143 mRNA upstream 16196 20882954 ~ 20890429 (-) True XLOC_016306
TCONS_00032144 mRNA upstream 49739 20916497 ~ 20923864 (-) False XLOC_016307
TCONS_00032146 mRNA upstream 113404 20980162 ~ 20981907 (-) True XLOC_016308
TCONS_00032147 mRNA upstream 125227 20991985 ~ 20994126 (-) True XLOC_016309
TCONS_00032148 mRNA upstream 209827 21076585 ~ 21082695 (-) True XLOC_016310
TCONS_00032140 other downstream 53978 20757582 ~ 20757699 (-) True XLOC_016303
TCONS_00032138 other downstream 107154 20702226 ~ 20704523 (-) False XLOC_016302
TCONS_00032139 other downstream 107154 20702706 ~ 20704523 (-) True XLOC_016302
TCONS_00032137 other downstream 108941 20701088 ~ 20702736 (-) False XLOC_016302
TCONS_00032136 other downstream 109814 20699481 ~ 20701863 (-) False XLOC_016302
TCONS_00032172 other upstream 1567672 22434430 ~ 22434546 (-) True XLOC_016331
TCONS_00032186 other upstream 2030527 22897285 ~ 22897401 (-) True XLOC_016343
TCONS_00032199 other upstream 2127263 22994021 ~ 23001370 (-) False XLOC_016345
TCONS_00032238 other upstream 3394459 24261217 ~ 24261296 (-) True XLOC_016372
TCONS_00032244 other upstream 3412081 24278839 ~ 24280795 (-) False XLOC_016373

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_05942638_05967553.mRNA True 6841 mRNA 0.52 47 CI01000004 5942604 ~ 5967553 (-)