RNA id: TCONS_00032131


Basic Information

Item Value
RNA id TCONS_00032131
length 4316
RNA type mRNA
GC content 0.34
exon number 6
gene id XLOC_016301
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 20658259 ~ 20715094 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAACAACATCCTTTGCGGAACTAACAAGTACACATTGTTTCCTACGGACTTTTTATTTTCGTGGACACCTTTTTTGACAGCAGAGTAAGCACGTGAGTGTAAAAGCGTCAATGTTTACAGTAAAGTCATCATTAGAAAAGCTGCAGGCAGATTGGTGTTGAAGTTATGCATTTACATTTGTTGTTAAACTTTTATGAAAACTTAATGGTCTTGGAAATGCAATATCTGTTATCTCTTACTAAGAAGTTCTCATGAGTGTATTATATATACTTTGTTATGTCTAACTGGTCAGTGTAATGAACTGCACCATGTGTGTTTCGTTTCAGTTGCTTCAGTGAATGGATTGTATTTGTTTCATTGCGTTGATATTGAATACGTTTTGTGTTTGCTTAGTTAACCATGATACCCGTGGCGTCTGGACTCTACATCGGGTCAGTGTCTGATCTGAAGGATGCTGAGAGTCTGTCAGCTGCAGGTATAACACACATTCTGACTGTAGACTCAGAGGAAGCTTCTGTCACTGGATTCAACACCAAATTCATCCGAGCTCTGGATGATGAGTCCACAGACCTGCTGAGCAGACTAGATGACTGTACCAGCTTTATTTCTGAAGCCCTTAGCACACAAGCTGACTCCAAATCAGCAGCAGTTCTTGTGCATTGCCATGTGGGGCAAAGCAGAAGTGCTGCAGTGGTGACTGCTTACCTGATGAAAACACAGCACCTGACCTTACAGGAAGCATATTCTAAACTGCAAAACATAAAACCAGATGTCAAAATGAATGAAGAGTTTCTGGATCAGCTGGCACTTTATGAATTGATGGACTGTAAAGTGGACACCACAAGTCCTGTTTACAAACAGTTTAGGCTGAAAAAGATTACAGAGAAATATCCAGAGCTCCAGAATGTGCCAAAAGATGTATTTGCTGTTGACCCTGCACAAACCCAGAATGCAGAAGCTGTATACAGATGTAGAAAGTGCAgACGCACACTTTTCCGACACTCCAGCATTCTCAGTCACTGTGTGGGAAGTGGAGCGTCTGCCTTCTCTCATAAGAAGACACGGATTGTGAGCTCTTCAGCTGAAGATGAGACACAGTGCACTTCCTATTTTATAGAGCCGGTGCAGTGGATGGAGCAGGCTTTACTAGGGGTCATGGATGGACAGCTTCTGTGTCCCAAGTGCAGCTCAAAGCTGGGCTCCTTTAACTGGTATGGTGAACAGTGTTCGTGTGGCCGCTGGGTCACACCGGCCTTCCAGATGCACAAGAACAGAGTGGACGAAATCAAACACATCAGTATATCTGCACTCAAATGACCTCCAATAAACTTCTGTATCATATGcacaaaaattgtttttatttttagtgttttgagTTAAATAATACACAACTTTTTGTATGGCATAAATTATaagctatatacatatataactatATGATAAGGAACATTTGATTTGGTTACTAGTTGTTGTTAGTaaaatgtagacatttgacatttCCCCCAGTTTTTGCTCAAGATGCGAATTTTAACCAGATCCCACATGGCAAgacaaaaactgatttttttttcgtCATGTTATTGTTTTGTGGAATgagaaattcactgaaatatcacagtaacagagttgacaaataaTGAATCTACTATTAGTGTATCCTCAAGTTTGTAAAAATTGATTAAAGTATAAATGACCTGCCTCAGTGCCTTCACTTGGAGTAAGTCACTTGGTTTTTCTACTAGTGCTTTACAGATTGTTCTGCCTTTTATcgctgaaattaaaataatacagaGAATAGATGTTTCATATGCAACAGTTTAATAAACATAGTTATTGCACATACAAGATGAAAATTAGGCTTAATCATTTCCTGATAATTGAAGCTGAATGTGTAATTCAGGAggcagaaaaagtaaaaaaatagataaagtagtctttaatatttttaacataaaaaatagtatttaaataattttaaatattataaataaaagacaaaatggCCCTAAGTTTACATACAAGTGTAAATTGTTAGAAATAACATGAAATAAGTTGTTATTATTCAAAActaattaacttttattttatttagttttatttagaaaaataatagaagattatatataatataattatataaataattatataaatataatcattttaatttgtaaattattcctgtgatggcaaagctgTTTGTTTACTCCAGTCTGTCACATGATCCTCCAGAAGTCATTCataatatgctgattttgtgcagcaaaaataaaataaaataaaaacctatgTTATCACTTATTTTGAAAGTTATTAATTTTCTGCTAAATTTGAAACATTATAATTCTTTGATGATTTTAAcgtttaaacataaaaataaatattaaatatatatagacagacaaaacaaaaaaaaaacctcttaatGTCCCAAACTTTTGTAATGGGTTTATATATTCTGGTTTTATTTACCTTGTTTTGTCTCTTCCATAAATGAGTATGGTTTATTTAAATTAACCTCtgcatttttcaaataaatattaccAGTCTCATCAAAGAGCTTACATGTACATTTCTTTCCATCCAATAGGAGGCGACAAATAACTATCACTGTCAATTGATTAGACTAAAATGTTAGTCATAGTCAAAATGGTGAAGAATAAGGATAAAGTAGCATCCGTTCATGTTTACACTACCATTATAGATGACAAGTAACAAAAAGTGAGACCATatggaaaagaaaaacagtacTAGTTGTCGATAACTATTCAAAATGGGTAGAATTCTTAAGATACTACATTTACTTATAGTGGTGCCACACAACATTTGTTCATAAGTTGGACATGATGTACACTGGTAATGATGCAGTTTCCTCTTGGCCTCCAGCTCAGAGATGTTTCTATGGTCTATTTATTGCACGGGCCTGAGAGAGACGCTGTGTGGTTATGGCATTGAGTTGTGAGATCCTGTTGTGTTTATGAGGGTCATCTTCTTCATGTAATAGCCTGAACTCTCTCTGTGAAGTGTGAAGAAATGAAGAGCTGCCTGCTGTTCATGTACACCGAAGAGAAACACTCATTTAAGAGTTTGGGCTAGATTTAGGGTGATATGAAAGTCCTTAAAATGAAGTTTTATAGTACAAtaatggcaagccattttaacatGGAATCTTTAAAACATACTGGTGTCTGTTTTCATGCAACTGGGGTCTCATTTCATAAGTTATATAATCAAAAGTTGAGAAACGTCTGATctataaaaaacaaacttgacaggagAATGCGCTCAGCTGTAAGTAAACATTTCACTTTTAGGAAGGTATTTGATAAATCGGAACCCTGTTTTTTGTAAGAGGTACTTcttgattaaatattaattcatattattcccatacatacagttgaagtcagaattattagccaccctttgattttttttttatatatttcctaacttttgtttaacagagcaaggaacttttcacagtatgtctgataatatgttttctattagagaaagtcttttttgttttattctggctagaaTCAAAGCCCAAACCATTTGAAaatcaattttaaggtcaaaattatcagtccctttaagctgtatatatttttcgatagtctacagaacaaaccatcgttatacaataacttgcctaattaccctaacctgcctagttaaccttattaacctagatagggctttaaatgtcactttaagctgtatagaagtgtcttgaaaaatcaagtaaaatattatttactgtcatcatggcaaagataaaataaaccagttattagaaatgagttattaaaaccattatatttataaatgtgtagaaaaaaattgttgctccataaaacaaaaattggggaagaaataaacataaggttaataatttaggggggctaattctgacttcaactgtatattttagagGTATAAGTAATACGTTcggaggttcattccactttggtgaccacagataaataaagggactaacctgaaaagaaaatgaatgaaatggagTAAGTTATAACAACTAGTATTTTGTAAAAAGTAAAACACATTTGGAAGGCATAGCTACATTGAAAACAAAAATCATTATTACAAATGTCTTTTATTATTTGCAACAATGTAGCAGTGATTCTTATAAATGGCTCTCACAGCTAGTTTGTACAGTATCTCTTTcgaatgactttaaaaaaaagctaGCAACAAAACTAAACAACTGTTCCATACACATAAAATAAAGGAAACTCTGAGAAATAGAGGCACATTTTCTTTCTCTTCATTCACAAATAATCAGTGGC

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0016311 dephosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0008138 protein tyrosine/serine/threonine phosphatase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0016791 phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
ko01009 Protein phosphatases and associated proteins
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-050626-91 Predicted to enable protein tyrosine/serine/threonine phosphatase activity. Predicted to be involved in protein dephosphorylation. Predicted to act upstream of or within dephosphorylation. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human DUSP12 (dual specificity phosphatase 12).

Ensembl:

ensembl_id ENSDART00000179247

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033361 lncRNA downstream 195336 20453614 ~ 20462923 (-) False XLOC_016298
TCONS_00033362 lncRNA downstream 195350 20456287 ~ 20462909 (-) True XLOC_016298
TCONS_00033363 lncRNA downstream 199250 20457947 ~ 20459009 (-) True XLOC_016299
TCONS_00033803 lncRNA downstream 509890 20144257 ~ 20148369 (-) False XLOC_016295
TCONS_00033801 lncRNA downstream 509901 20124994 ~ 20148358 (-) False XLOC_016295
TCONS_00032145 lncRNA upstream 252170 20919171 ~ 20920335 (-) True XLOC_016307
TCONS_00033804 lncRNA upstream 455187 21122188 ~ 21124115 (-) True XLOC_016311
TCONS_00032151 lncRNA upstream 498804 21165805 ~ 21166754 (-) True XLOC_016312
TCONS_00033805 lncRNA upstream 528527 21195528 ~ 21197037 (-) False XLOC_016313
TCONS_00033806 lncRNA upstream 528527 21195528 ~ 21208559 (-) False XLOC_016313
TCONS_00032129 mRNA downstream 58944 20555394 ~ 20599315 (-) False XLOC_016300
TCONS_00032130 mRNA downstream 84066 20556185 ~ 20574193 (-) True XLOC_016300
TCONS_00032128 mRNA downstream 188119 20448234 ~ 20470140 (-) True XLOC_016297
TCONS_00032127 mRNA downstream 188134 20444477 ~ 20470125 (-) False XLOC_016297
TCONS_00032126 mRNA downstream 334358 20262479 ~ 20323901 (-) True XLOC_016296
TCONS_00032141 mRNA upstream 96288 20763289 ~ 20788698 (-) True XLOC_016304
TCONS_00032142 mRNA upstream 144676 20811677 ~ 20866758 (-) True XLOC_016305
TCONS_00032143 mRNA upstream 215953 20882954 ~ 20890429 (-) True XLOC_016306
TCONS_00032144 mRNA upstream 249496 20916497 ~ 20923864 (-) False XLOC_016307
TCONS_00032146 mRNA upstream 313161 20980162 ~ 20981907 (-) True XLOC_016308
TCONS_00032124 other downstream 512434 20145741 ~ 20145825 (-) False XLOC_016295
TCONS_00032120 other downstream 1023168 19634994 ~ 19635091 (-) True XLOC_016293
TCONS_00032117 other downstream 1078580 19579582 ~ 19579679 (-) True XLOC_016290
TCONS_00032113 other downstream 1099088 19539680 ~ 19559171 (-) True XLOC_016287
TCONS_00032112 other downstream 1134576 19523586 ~ 19523683 (-) True XLOC_016286
TCONS_00032136 other upstream 32480 20699481 ~ 20701863 (-) False XLOC_016302
TCONS_00032137 other upstream 34087 20701088 ~ 20702736 (-) False XLOC_016302
TCONS_00032138 other upstream 35225 20702226 ~ 20704523 (-) False XLOC_016302
TCONS_00032139 other upstream 35705 20702706 ~ 20704523 (-) True XLOC_016302
TCONS_00032140 other upstream 90581 20757582 ~ 20757699 (-) True XLOC_016303

Expression Profile

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