RNA id: TCONS_00032129


Basic Information

Item Value
RNA id TCONS_00032129
length 3731
RNA type mRNA
GC content 0.49
exon number 18
gene id XLOC_016300
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 20555394 ~ 20599315 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGTGGTGAAGATCAGGGGGGCGAGGTCTGCTTGTTCTCAAATGAACCATGTACTGTCTCTGGACGGCAAGAGTCGGACACACTCTACTACCATACTTTCTCATACACGTATGGATTATTAATACAGCAGCAGGTGTAAATGTTAAGGACAGCAGTGAGGGGAGGGAGGATTTGCAGAGGCATCCAGACGAGGTAGCGCAGTGGTGGGGTGAATGGAGCAGCTGGTCCACCTGTTCCCGTACCTGTGGAGGAGGAGTGCGCTCTCAGGAACGTCACTGTCTGCAACAGAGACTGACGTCGACCCAAAACATCAACAGTTCTTTCTGCATTGGACCTTCAAAACAGTATCAGCTGTGCACAAATCAGCCGTGCCCAAACAGCAGAATCAGCTTCAAACAGCACCAGTGCTCTCAATTCAATGCCAAAGCCTTCAGCAGGAAGCACTATGAGTGGGTTCCACTTTATCCGGATGATTACATCAACATCTCCAATAAGCCATGTGACCTCCAGTGCACTACAACCACAGGGGAGAGGCAACTACTGGTTCCTGCTCATGATGGGACGTTCTGCAGGGACGGCATTTACCAGGGGGTTTGCATTGAAGGCCAGTGTCAGGTAGTCGGGTGTGATGGGAAACTGTATTCCAGTAAAACCATAGACAAATGTGGAGTCTGTGGTGGAAACGGCGCTTCATGTTATCGTGTCTCAGGAACTTACCGGAAGGGGATCACACAGTTAGGTTATGTGTTTATAACCAATATACCAGTTGGTGCTACTGACATCCAAATCATAGAGAGGCGTAAAACTGAAAATATCTTGGCTCTTTCTGATGAAGCTGGCCACTTCTTCTTCAATGGCAACAGTGTGATTGACAATCCACAAAACTTTCATGTTGCCGGGACGGTCTTTAAATACAGGAGGCCTGCAAACCTCTTCTCTGATGGCTTTGAGTACATCATGGCTCAGGGTCCCACCCAGCAGGCCCTGAATGTCATGTATTACAACCTCAATGGAAAGATGCCTCACATCACATATGAATACACAGTTCCTCGAGCTCCGGCTTTTCCAATGACCTCTACGCCCGAACAACCTCAGATCAGCAACCTGATGTCAAAGACGTCTAGAGACTCCTCAGTGGCCGAGCCCAAGGGCAACACGTCCTCAACAGAGCATAACGAAATTGGGGCCCGGAAGCAGCATGAAAAGAAAAGCAATCAGAGCAGTTCACTGGTTCCTCAGGATAATGTAGATGTGCACGAGGAGCTGCTGTGGGGGCTTCAGGCCTCTGTGAACTTCAGTGAACTGCCTGCTCTGGTGCTGTTTAGACCGGCCAGTGAGGTCCTTCAGAATGAATTGGATGATGAAATACACCATCTTGAGGCACAAGAGAATTTTGGCCCCGATTCCAACCTGATTGATGGTGATTCGTCCAGTTCCAGTGACTCAAACACCTCCATCCCTCTCCTGAAGAGTCTCCTCTATGACGGGGCATCATGGTCCTCCAGACAGCCCTGTAAAGACTCATCTGCACTCTCCGGCTGTTCTATACTCAAGCTCAACTCCAGTGCACCACTGGACAACAGCTTGACCCTGGAGATCTACCCGGGCAGTCTGGACCTGCACAGTCCTGATGGAGAGCCCAGGACCAACGACTCCACCAACCACCAGTCCAACATCCTCCAGCTCCACCAGATGGAGCCAGTGCAGGCCCCCCACAGCGAGAGTAATGAGTTTGAGGTAGAATCGCTGGATCATGACGTCAGCATGTCGGACATGTATAGATGGAAGGTTTCTGCTTATGCACCTTGCAGCTCAACATGTACAACAGGTATAAGCACATCATATGCGTTGTGTGTAAAGTATGATGGGACAGAAGTGGACGAGAGTTACTGTGATGCTTTGACCAGGCCGGAGCCAACACATGAGTTCTGCACAGGGAAAGAGTGCCTGCCCAGGTGGGAGACGAGTCGCTGGAGTGAGTGTTCTCGAACATGTGGAGAGGGCTTTCAGTTCCGCACGGTGCGCTGCTGGAAGATGATGGCACCAGGGTTCGACAGCTCTGTGTATGATGAGCTCTGTCAGGCCGTGGAGCTGCAGAAACCCATGACGAGGAAAGCCTGCAAGAGCAAGAGCTGCGGCCCACAGTGGGAGATCTCAGACTGGTCTGAGtGTTCAGCGCGGTGTGGTGGCCGAGGGGTGAGGAGTCGTGATGTCCGCTGTTCAATGGAGGCCAGACTTTGTAATGAGTCCACCAAACCAGTCAGCCAGAGAGAGTGTGAGGGGCCGCCCTGTGACCGCAGGTGGACCGTCTCTGACTGGGGCCCGTGCTCAGGGCCGTGTGGGGAGGGCAGGATGAAACGGTACGTGGTGTGTAAGAACAGCAATGGGAAGGTGATTTCCGATGGTCAATGTGATCCAGAGCTGAAGCCACTGGCAGTACATCCATGCGGCGACAAAAACTGCCCCGCTCACTGGGTGGAGCAGGAGTGGGAACAGTGTAACTCCACGTGTGGCCGTGGGGTGAAGACACGTCAGGTGGTGTGTGCAGGGCTGGAGGCTGGTGTGTTTAAAGAGTTTCCTGAGCGGATGTGTGACAGAGCCCTCAGACCTGCAGATACCGCGGCCTGCTTTGAGAGACCCTGCTCCAAGTGGTTCACAACATCCTGGTCCCAGTGCAGTAAGACGTGTGGGATTGGAGTGCGAGTACGAGAGGTGAAGTGTTATCAAGGAGAAGAGCTCGGCCACAGCTGTGATACAACACTGAGACCAGAGGCCAGACAGAGCTGTGAGGTTCAGCCCTGCACCACTGAACCACCAGCTGATGATGCGTGTCAAGATAAACCGACTGCTAACTGTGCCCTGGTGCTGCGGGTGAAGCTGTGCACTCACTGGTACTACAGGAAGGCCTGTTGTCTGTCCTGCAGGAACAAAAGCCAATGATGTCCCTCCTTTACATACTGGACGCACTGAACCCAGAACCCCCCCAACCCCCTCTCAACGCTGGCAGTCACCTCTCAATAAAGAACGGTGCTAAATCAGAAGGGCACTGGCCCTCTGGTGGTCCTGCGGGACCCCATAAAGGCAGCTCCTGTAACTGGACAGCAGAGGAGCCGTGGGTCTACTGATCATACAGACAAACACTCCTCCTGTGTACTgtactgctcacacacacacacacacacacaaactcacagacATGGCGTATGATATATGTACAAAGTTTGTTCTTGTTTGTATTTGTGTCCACTTTTGCTTTagaagaagaaataaaactaaagtggTTTTGACAtctgtttttgcagtttttttcacacacaaacacactgtaaacTAAAGCTGCTTTCAGTTCCATGCTTTGGGTATTAAACAGTCAAGATATGagatacaaatacatttatttcattcAGGTTTTATTATATACACTACATATAAATATAACAGAACAATGACATTTTGTGTTAGAACAGctataaaatgaattattacttGCTATAATGGCCCTGACCATAGAAAAGGGTTGTTTTAGCTTTGTTTCAAAACAAATTTGACATCCAAtttgagtaaaatatatataataaacatctCCTgagttatttttaatatatttttaccgTATCTCAAACCCAACTGTtgaatttgtccatattttacccaagcCCAGTATAAAATTTAAAGGTGCCATTTACTGCATTGAATCAAcgagttaaattgttctctgatatctgcAAAGT

Function

GO:

id name namespace
GO:0030198 extracellular matrix organization biological_process
GO:0031012 extracellular matrix cellular_component
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008233 peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-265 Predicted to enable metalloendopeptidase activity. Predicted to be involved in extracellular matrix organization. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix.

Ensembl:

ensembl_id ENSDART00000114199

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033361 lncRNA downstream 92471 20453614 ~ 20462923 (-) False XLOC_016298
TCONS_00033362 lncRNA downstream 92485 20456287 ~ 20462909 (-) True XLOC_016298
TCONS_00033363 lncRNA downstream 96385 20457947 ~ 20459009 (-) True XLOC_016299
TCONS_00033803 lncRNA downstream 407025 20144257 ~ 20148369 (-) False XLOC_016295
TCONS_00033801 lncRNA downstream 407036 20124994 ~ 20148358 (-) False XLOC_016295
TCONS_00032145 lncRNA upstream 319856 20919171 ~ 20920335 (-) True XLOC_016307
TCONS_00033804 lncRNA upstream 522873 21122188 ~ 21124115 (-) True XLOC_016311
TCONS_00032151 lncRNA upstream 566490 21165805 ~ 21166754 (-) True XLOC_016312
TCONS_00033805 lncRNA upstream 596213 21195528 ~ 21197037 (-) False XLOC_016313
TCONS_00033806 lncRNA upstream 596213 21195528 ~ 21208559 (-) False XLOC_016313
TCONS_00032128 mRNA downstream 85254 20448234 ~ 20470140 (-) True XLOC_016297
TCONS_00032127 mRNA downstream 85269 20444477 ~ 20470125 (-) False XLOC_016297
TCONS_00032126 mRNA downstream 231493 20262479 ~ 20323901 (-) True XLOC_016296
TCONS_00032122 mRNA downstream 434490 19824190 ~ 20120904 (-) False XLOC_016294
TCONS_00032121 mRNA downstream 434490 19824190 ~ 20120904 (-) False XLOC_016294
TCONS_00032131 mRNA upstream 58944 20658259 ~ 20667001 (-) False XLOC_016301
TCONS_00032132 mRNA upstream 61549 20660864 ~ 20666947 (-) False XLOC_016301
TCONS_00032133 mRNA upstream 61988 20661303 ~ 20666964 (-) False XLOC_016301
TCONS_00032134 mRNA upstream 62058 20661373 ~ 20666920 (-) False XLOC_016301
TCONS_00032135 mRNA upstream 63044 20662359 ~ 20715094 (-) True XLOC_016301
TCONS_00032124 other downstream 409569 20145741 ~ 20145825 (-) False XLOC_016295
TCONS_00032120 other downstream 920303 19634994 ~ 19635091 (-) True XLOC_016293
TCONS_00032117 other downstream 975715 19579582 ~ 19579679 (-) True XLOC_016290
TCONS_00032113 other downstream 996223 19539680 ~ 19559171 (-) True XLOC_016287
TCONS_00032112 other downstream 1031711 19523586 ~ 19523683 (-) True XLOC_016286
TCONS_00032136 other upstream 100166 20699481 ~ 20701863 (-) False XLOC_016302
TCONS_00032137 other upstream 101773 20701088 ~ 20702736 (-) False XLOC_016302
TCONS_00032138 other upstream 102911 20702226 ~ 20704523 (-) False XLOC_016302
TCONS_00032139 other upstream 103391 20702706 ~ 20704523 (-) True XLOC_016302
TCONS_00032140 other upstream 158267 20757582 ~ 20757699 (-) True XLOC_016303

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_05843593_05862033.mRNA True 3889 mRNA 0.50 18 CI01000004 5843506 ~ 5862544 (-)