RNA id: TCONS_00032126


Basic Information

Item Value
RNA id TCONS_00032126
length 2961
RNA type mRNA
GC content 0.40
exon number 6
gene id XLOC_016296
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 20262479 ~ 20323901 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGACTCCAGCGCACTTCACAGCGCTCTGTCAGCGACACAATGCGCTTCTATCCCTGCAGGATTTTATGACATGTCATGGTGGAATAAGAGGAAATCATGCCAAAACTACCATAGGAACCGGAGGCCTTTCGTTTATTTCCCGGGATCCGTTTGAGCCTCATCGACAATGCTTTACTTTCAGCTGGTGATCATGGCAGGGACTGTCATGCTGGCTTACTACTTTGAGTACACCGATACTTTCAACGTGCACGTCCAGGGATTTTTCTGTCATGATAATGCCTATACGAAGCCCTATCTGGGACCAGAGGAGTCCAGTGCGATCCCACCGGCTATCCTTTACGCGGTGGTCGCAGGGGTCCCGGCACTTGTGATTACAGTGACAGAGTCCGTGCTCTTCTTGCTGCAGTATGTGTCTGAGGATCTAGACAACCGAGAGAAGATCATTGTGATGGGCGACTGTTGTTACCTCAACCCTCTGGTCAGAAGGACGTTTCGCTTTCTTGGTGTGTATGCATTTGGCCTGTTTGCCACAGACATCTTTGTAAATGCCGGGCAGGTGGTGACAGGAAATCTTTCTCCATACTTCCTGACGGTGTGCAAACCCAACTACACAGCACTGGGGTGCCAACAGGTGGTGCGTTTCATCAACCAACAGGACGCTTGCACTGGCAACGAAGATGATATCTTACATGCTCGCAAATCCTTCCCATCCAAAGAGGCGGCCATCAGTGTTTATGCAGCTCTTTATGTTGCAATGTACATCACTTGCTCGGTGAAGGCCAAAGGGACACGGCTGGCCAAGCCGGTGCTCTCTCTGGGGCTCATGTGTCTGGCCTTCCTAACTGGGATTAATCGAGTGGTGGAGTATCGAAACCACTGGGCTGATGTCATCGCTGGCTTCATCATCGGAGGAGCCATTGCTGTCTTTATGGTGGTGTGTGTGGTGAAGAATTTCAAAGGGAAGCCCTTACTGAGTGAGATCCCACCAGAGGAGAGTGTATCCAGCGGTCCCATGATCACTCAACCCAGATTGGACCACACTATGGAGAAATACATAGCCTCCCAGAATCCGATCACCTATGCTGAGATCACATGACAGTGAAAAGCCAGCTTGCCAGAATGCTGTGGAAAATGTTGCTGCTCTCCGATGCGACTTCTTACTTTGAGCGCAACGTCGATATGTGCTATTTTTGACACTTTTATTTTCAAGTGTGTGTAAAACGTGTCAATACCTTGTTGTCCTTCTTgtaactttgattttttttatatggaaAATAGTTACAGTAGGATTGCATCCCCATTTTTATACAAGCATATTATTTTTAGGATTTTTGTGGTTGAAAATACAGGGTATGGAGTGACTCTGTGCAACATGACATCCAACCAAAATGTGTTTCATATAtcctaatgttttattttacagtaaaactgTGAGTCTATTTTTGAAATATCGTTATTGATCTCTTTCTTTTGAGGTGTTGTTTGATAGTAATGCTTTTTTGACACTTTCCTCTCACCAATACATATCacagtacatatacagtagaGTTGCATCAGATTCCATTCTCTGCATTTTAAAGCACGTTTAGGATTTGAGTATTGTGAAGGGAGATTTTATTCTAGAGAGCGTCTGATTGGTTAAAAGTAAGTGTGGTGCAGGATGAGTCATCAGTTTTTAGTGTTCAGTTTTTATGGACTATATTCTAATTAAAACAGTCCACATAGACTTTAAAAACTACAAAAGTGGTGTTAAAAGTGGGCTTAAGCTGAAATCATGATTGATTTTGCTGTCATTATGGCGGAGAGCTCCTTGAGCAGAACTGATGGATTGAATTGTGACTGGCAATTGATTACAGGACTCGAAAGATTAGATGCTCAAGCATTTGCCCAAAGAGGCTGCTAGGGTGTGTATGAGGTGTGCGtttgtctttctgtgtgtgtttatgtttgtgcttATTTGTGAGTCCACCCTTGATGTTGCCTTTTTGAGTATCGAGTCTCTAGTGGTTCGAAGAAGGACGcttctttctcttttttgtttttcttcttgttattttttatttatttttttggcaaacATTGAACTGGAATAATCCTTTTACCTGACAAAAATATGGAAGTATAGACCATAGCTTTTTCATAATGATTTATATCAAAGGATGCATTTGTGATTtcagtcaaatttttttttattatatccaaAAGCTGGTTAGCATCAAAGGTCTGCAGTGTTTGGTTGAATTTACATTCTGCAGATTGATATTATACACGATTCTGACTGAGTAAATGTTTGATCTCTTACTGCCCAGTGATGAGGTTTGATTTTCAAATTTATGCCTggaatacattaaaaataatgtctCCTAATGATGTAAATCATTTATCCTGATCATCTCACACTTGCAGTTGCACCCTGAATCCTTTCAAGCGGACTGTTTGTCTCTTCAGTTGAGGCTTTCATCAGGGCAAAGCTTGCGAATATAATTTCTTAGAGAGGTTTTGGCTTGATCTCTGAGCAGTTTGTTAGGTACTCGTTGTAAATCTGAAAATGAAAACAATTCAGAAAGAGCTACTGCAATAAATGCACACAGATTTAAATTCAGGGTTGTTTTCTAATGAAAGATGTGTGATTTTGTCTCCCCAACAGGGtcagaaaaaaatgtgtattggTACAGTAGCCTATGTATATTGGGTAAACCCAAAAGTCCtggttattttttattacattttgaatcCTTTAATTTCTACTATTAAGACCAATATTTGTTTTCTACATCTGACCATTTTCTATATTCAGATTGTTCTCCTGACATCACTGTTAGCTAATATTTAGtttgttgttttaatattaataatcaggTTGACCTATAAGTTGAGTTTATATGTGTATTTCTGATCATGTTCTGTTTATGAAAGTgtagcactttacaataaaggTGTATCTTAGTGCTTCATGATTAA

Function

GO:

id name namespace
GO:0046839 phospholipid dephosphorylation biological_process
GO:0006644 phospholipid metabolic process biological_process
GO:0007165 signal transduction biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008195 phosphatidate phosphatase activity molecular_function
GO:0016791 phosphatase activity molecular_function
GO:0042577 lipid phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-281 Predicted to enable lipid phosphatase activity and phosphatidate phosphatase activity. Predicted to be involved in phospholipid dephosphorylation; phospholipid metabolic process; and signal transduction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human PLPPR5 (phospholipid phosphatase related 5).

Ensembl:

ensembl_id ENSDART00000125531

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033803 lncRNA downstream 114110 20144257 ~ 20148369 (-) False XLOC_016295
TCONS_00033801 lncRNA downstream 114121 20124994 ~ 20148358 (-) False XLOC_016295
TCONS_00032125 lncRNA downstream 114444 20146139 ~ 20148035 (-) True XLOC_016295
TCONS_00033802 lncRNA downstream 114476 20144257 ~ 20148003 (-) False XLOC_016295
TCONS_00032118 lncRNA downstream 640835 19601696 ~ 19621644 (-) True XLOC_016292
TCONS_00033361 lncRNA upstream 129713 20453614 ~ 20462923 (-) False XLOC_016298
TCONS_00033362 lncRNA upstream 132386 20456287 ~ 20462909 (-) True XLOC_016298
TCONS_00033363 lncRNA upstream 134046 20457947 ~ 20459009 (-) True XLOC_016299
TCONS_00032145 lncRNA upstream 595270 20919171 ~ 20920335 (-) True XLOC_016307
TCONS_00033804 lncRNA upstream 798287 21122188 ~ 21124115 (-) True XLOC_016311
TCONS_00032122 mRNA downstream 141575 19824190 ~ 20120904 (-) False XLOC_016294
TCONS_00032121 mRNA downstream 141575 19824190 ~ 20120904 (-) False XLOC_016294
TCONS_00032123 mRNA downstream 209918 19825299 ~ 20052561 (-) True XLOC_016294
TCONS_00032116 mRNA downstream 632182 19574650 ~ 19630297 (-) False XLOC_016289
TCONS_00032119 mRNA downstream 632182 19628134 ~ 19630297 (-) True XLOC_016289
TCONS_00032127 mRNA upstream 120576 20444477 ~ 20470125 (-) False XLOC_016297
TCONS_00032128 mRNA upstream 124333 20448234 ~ 20470140 (-) True XLOC_016297
TCONS_00032129 mRNA upstream 231493 20555394 ~ 20599315 (-) False XLOC_016300
TCONS_00032130 mRNA upstream 232284 20556185 ~ 20574193 (-) True XLOC_016300
TCONS_00032131 mRNA upstream 334358 20658259 ~ 20667001 (-) False XLOC_016301
TCONS_00032124 other downstream 116654 20145741 ~ 20145825 (-) False XLOC_016295
TCONS_00032120 other downstream 627388 19634994 ~ 19635091 (-) True XLOC_016293
TCONS_00032117 other downstream 682800 19579582 ~ 19579679 (-) True XLOC_016290
TCONS_00032113 other downstream 703308 19539680 ~ 19559171 (-) True XLOC_016287
TCONS_00032112 other downstream 738796 19523586 ~ 19523683 (-) True XLOC_016286
TCONS_00032136 other upstream 375580 20699481 ~ 20701863 (-) False XLOC_016302
TCONS_00032137 other upstream 377187 20701088 ~ 20702736 (-) False XLOC_016302
TCONS_00032138 other upstream 378325 20702226 ~ 20704523 (-) False XLOC_016302
TCONS_00032139 other upstream 378805 20702706 ~ 20704523 (-) True XLOC_016302
TCONS_00032140 other upstream 433681 20757582 ~ 20757699 (-) True XLOC_016303

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_05709639_05728550.mRNA True 2046 mRNA 0.40 5 CI01000004 5708626 ~ 5728791 (-)
bowfin (Amia calva) AMCG00005110 True 990 mRNA 0.52 7 CM030140.1 15465083 ~ 15492249 (+)