XLOC_016289 (pimr51)


Basic Information

Item Value
gene id XLOC_016289
gene name pimr51
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 19574496 ~ 19630297 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032115
TATGACTCGATATATAAACACTGAAAGCGCTGAAAATCTTGGTTGAGAGAGGAGGCGAATTCAGAGACTTGCAGAGACTTTTGTGCTGAAACTGATTCTTCAAGAAGCCCTGAGGATTTCTGAGAGACATCGGAGGATATTTTCTTCGAAaagaatatataattattttaatcgtTCAGATTACTTGTTAAGACGCTTATTTTATtgctcttttgtcatttctgTTTTAGTTTGTGCCTTTTTTCTACTTGTTTGTTTGACATTTCAGTTGTCTTTTATTGATTTGTCATTATATTTTCTCTTGTTTGTATTTTCTCTTGTGGTGGAGTTTTGCAGGACGGTCTTCATGGCGCAAATGGCTGAAAGAGGAAGCCGCTCCAGATCCAGGAGTGCAGCTTTCACCCAGACAGCAGTTCAGGACACAGAGACACGGGACGCTTCTGGTGGGCTTCATGGTTATTTGGCTCCTCTGTCCTCTCTTTTGGCCGATTCAGTGTCCACAGatcagaggaagaggaagaggaagcaGCAAACGGCGTCCACCTCGTCTAGGAGACCtgccaaacgctctcgcagagACCAATATGCCaagggcccgttgctgggacgaggcggattcggctctgtgtttgctgggatccgcaggtctgatggactgccaGTGGCCATCAAGTACGTGTCTAAAGAGCCGACGGACACCAGACTGAAAGTTGACGGTCAGGGTCGTCTGCCACTGGAGGTGGCGTTAATGACCCGCGTCTCTTCAGCTCCTGTctgccccagtgtcctgcagctgctggactggtttgaccaTCGCAGACGCTACGTCCTGATCCTGGAGCGTCCGGCTccttgccaagatctccagagtttctgtgaggagaacggctgtctggacGAGCCtctggccaagaaagtgctggtgcagctgattgCGGCGCtgaaacactgcgagagccgccGCGTCCTGCACCGAGACGTCAAGCCAGAaaacctgctgatctccacagaCTCACacgacatcaagctgctggactttgGCTGTGGAGATCTGATGAAGGACTCGGCCTACAGATACTTTGCAGGCACTCCAGCTTTTGCTCCTCCTGAGTGGTTTCGGCATCATCGCTATCATGCCTCTCCACTGACAGTCTGGTCCATCGGCGTGACTCTCTACAACATCCTGTGCGACTGTTTCCCATTCAGAGGCGCACAGAGGGTCACGTCCAAAAGCAGACTGCACTTCCCGAGGAAGCTGTCGACAGagtgccgtcagctgattcgctggtgtctcagtgcagcgCCAGCAGATCGGCCCAGTTTAGATGACATTGAGCGCCACCCCTGGTTGCAGTGA
>TCONS_00032116
TATGACTCGATATATAAACACTGAAAGCGCTGAAAATCttggttgagagacgaggcgaATTCAGAGACTTGCAGAGACTTTTGTGCTGAAACTGATTTTTCAAGAAGCCCTGAGGATTTCTGAGAGGAGACTTTCTTTCCAGGACGACATCGGAGGATTTTTTCTTTGAAaagaatatataattattttaatcgtTCAGATTACTTGTTAAGACGCTTATTTTATtgctcttttgtcatttctgTTTTAGTTTGTGCCTTTTTTCTACTTGTTTGTTTGACATTTCAGTTGTCTTTTATTGATTTGTCATTATATTTTCTCTTGTTTGTATTTTCTCTTGTGGTGGAGTTTTGCAGGACGGTCTTCATGGCGCAAATGGCTGAAAGAGGAAGCCGCTCCAGATCCAGGAGTGCAGCTTTCACCCAGACAGCAGTTCAGGACACAGAGACACGGGACGCTTCTGGTGGGCTTCATGGTTATTTGGCTCCTCTGTCCTCTCTTTTGGCCGATTCAGTGTCCACAGatcagaggaagaggaagaggaagcaGCAAACGGCGTCCACCTCGTCTAGGAGACCtgccaaacgctctcgcagagACCAATATGCCaagggcccgttgctgggacgaggcggattcggctctgtgtttgctgggatccgcaggtctgatggactgccaGTGGCCATCAAGTACGTGTCTAAAGAGCCGACGGACACCAGACTGAAAGTTGACGGTCAGGGTCGTCTGCCACTGGAGGTGGCGTTAATGACCCGCGTCTCTTCAGCTCCTGTctgccccagtgtcctgcagctgctggactggtttgaccaTCGCAGACGCTACGTCCTGATCCTGGAGCGTCCGGCTccttgccaagatctccagagtttctgtgaggagaacggctgtctggacGAGCCtctggccaagaaagtgctggtgcagctgattgCGGCGCtgaaacactgcgagagccgccGCGTCCTGCACCGAGACGTCAAGCCAGAaaacctgctgatctccacagaCTCACacgacatcaagctgctggactttgGCTGTGGAGATCTGATGAAGGACTCGGCCTACAGATACTTTGCAGGCACTCCAGCTTTTGCTCCTCCTGAGTGGTTTCGGCATCATCGCTATCATGCCTCTCCACTGACAGTCTGGTCCATCGGCGTGACTCTCTACAACATCCTGTGCGACTGTTTCCCATTCAGAGGCGCACAGAGGGTCACGTCCAAAAGCAGACTGCACTTCCCGAGGAAGCTGTCGACAGGTAAGAGATGAAGATG
>TCONS_00032119
TATGACTCGATATATAAACACTGAAAGCGCTGAAAATCttggttgagagacgaggcgaATTCAGAGACTTGCAGAGACTTTTGTGCTGAAACTGATTTTTCAAGAAGCCCTGAGGATTTCTGAGAGGAGACTTTCTTTCCAGGACGACATCGGAGGATTTTTTCTTTGAAaagattatataattattttaatcgtTCAGATTACTTGTTAAGACGCTTATTTTATtgctcttttgtcatttctgttttagtttgtgcatttttttcttcttgtgtgtttgacattttagttgttttttattgatttgtCATTATATTTTCTCTTGTTTGTATTTTCTCTTGTGGTGGAGTTTTGCAGGACGGTCTTCATGGCGCAAATGGCTGAAAGAGGAAGCCGCTCCAGATCCAGGAGTGCAGCTTTCACCCAGACAGCAGTTCAGGACACAGAGACACGGGACGCTTCTGGTGGGCTTCCTGGTTATTTGGCTCCTCTGTCCTCCCTGTTGGCCGATTCAGTGTCCACAGATCAGAGGAAGAGGAAGCAGCAAACGGCGTCCACCTCGTCTAGGAGACCtgccaaacgctctcgcagagACCAATATGCCaagggcccgttgctgggacgaggcggattcggctctgtgtttgctgggatccgcaggtctgatggactgccaGTGGCCATCAAGTACGTGTCTAAAGAGCCGACGGACACCAGATTGAAAGTTGACGGTCAGGGTCGTCTGCCACTGGAGGTGGCGTTGATGACCCGCGTCTCTTCAGCTCCTGTCTGtcccagtgtcctgcagctgctggactggtttgaccaTCGCAGACGCTACGTCCTGATCCTGGAGCGTCCGGCTccttgccaagatctccagagtttctgtgaggagaacggctgtctggacGAGCCtctggccaagaaagtgctggtgcagctgatcgcggcgctgaaacactgcgagagccgccGCGTCCTGCACCGAGACGTCAAGCCAGAGAATCTGCTGATCTCCACAGACTCACacgacatcaagctgctggacttcggctgtggagatctgaTGAAGGACTCGGCCTACAGATACTTTGCAGGCACTCCAGCTTTTGCTCCTCCTGAGTGGTTTCGGCATCATCGCTATCATGCCTCTCCACTGACAGTCTGGTCCATCGGCGTGACTCTCTACAACATCCTGTGCGACTGTTTCCCCTTCAGAGGCGCACAGAGGGTCACGTCCAAAAGCAGACTGCACTTCCCGAGGAAGCTGTCGACAGagtgccgtcagctgattcgctggtgtctcagtgcagcgCCAGCAGATCGGCCCAGTTTAGATGACATTGAGCGCCACCCCTGGTTGCAGTGA

Function

symbol description
pimr51 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm.

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0006468 protein phosphorylation biological_process
GO:0007346 regulation of mitotic cell cycle biological_process
GO:0016310 phosphorylation biological_process
GO:0046777 protein autophosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-459 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm.
ZDB-GENE-070912-464 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm.

Ensembl:

ensembl_id ENSDARG00000069033 ENSDARG00000093408

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032115 False 1357 mRNA 0.51 7 19574496 19576640
TCONS_00032116 False 1301 mRNA 0.50 7 19574650 19630297
TCONS_00032119 True 1372 mRNA 0.51 7 19628134 19630297

Neighbor

gene id symbol gene type direction distance location
XLOC_016288 BX664750.3 coding downstream 9223 19560092 ~ 19565273 (-)
XLOC_016287 BX664750.2 coding downstream 15325 19539680 ~ 19559171 (-)
XLOC_016286 BX664750.5 coding downstream 50813 19523586 ~ 19523683 (-)
XLOC_016285 pimr52 coding downstream 53806 19518520 ~ 19520690 (-)
XLOC_016284 BX664750.1 coding downstream 61200 19506311 ~ 19513296 (-)
XLOC_016293 BX088713.2 coding upstream 4697 19634994 ~ 19635091 (-)
XLOC_016294 dpydb coding upstream 193893 19824190 ~ 20120904 (-)
XLOC_016295 NA coding upstream 494697 20124994 ~ 20148369 (-)
XLOC_016296 plppr5a coding upstream 632182 20262479 ~ 20323901 (-)
XLOC_016297 frrs1a coding upstream 814180 20444477 ~ 20470140 (-)
XLOC_016283 NA non-coding downstream 192174 19379111 ~ 19382322 (-)
XLOC_016298 NA non-coding upstream 823317 20453614 ~ 20462923 (-)
XLOC_016299 NA non-coding upstream 827650 20457947 ~ 20459009 (-)
XLOC_016302 AL954134.1 non-coding upstream 1069184 20699481 ~ 20704523 (-)

Expression


Co-expression Network