RNA id: TCONS_00032119


Basic Information

Item Value
RNA id TCONS_00032119
length 1372
RNA type mRNA
GC content 0.51
exon number 7
gene id XLOC_016289
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 19574496 ~ 19630297 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TATGACTCGATATATAAACACTGAAAGCGCTGAAAATCttggttgagagacgaggcgaATTCAGAGACTTGCAGAGACTTTTGTGCTGAAACTGATTTTTCAAGAAGCCCTGAGGATTTCTGAGAGGAGACTTTCTTTCCAGGACGACATCGGAGGATTTTTTCTTTGAAaagattatataattattttaatcgtTCAGATTACTTGTTAAGACGCTTATTTTATtgctcttttgtcatttctgttttagtttgtgcatttttttcttcttgtgtgtttgacattttagttgttttttattgatttgtCATTATATTTTCTCTTGTTTGTATTTTCTCTTGTGGTGGAGTTTTGCAGGACGGTCTTCATGGCGCAAATGGCTGAAAGAGGAAGCCGCTCCAGATCCAGGAGTGCAGCTTTCACCCAGACAGCAGTTCAGGACACAGAGACACGGGACGCTTCTGGTGGGCTTCCTGGTTATTTGGCTCCTCTGTCCTCCCTGTTGGCCGATTCAGTGTCCACAGATCAGAGGAAGAGGAAGCAGCAAACGGCGTCCACCTCGTCTAGGAGACCtgccaaacgctctcgcagagACCAATATGCCaagggcccgttgctgggacgaggcggattcggctctgtgtttgctgggatccgcaggtctgatggactgccaGTGGCCATCAAGTACGTGTCTAAAGAGCCGACGGACACCAGATTGAAAGTTGACGGTCAGGGTCGTCTGCCACTGGAGGTGGCGTTGATGACCCGCGTCTCTTCAGCTCCTGTCTGtcccagtgtcctgcagctgctggactggtttgaccaTCGCAGACGCTACGTCCTGATCCTGGAGCGTCCGGCTccttgccaagatctccagagtttctgtgaggagaacggctgtctggacGAGCCtctggccaagaaagtgctggtgcagctgatcgcggcgctgaaacactgcgagagccgccGCGTCCTGCACCGAGACGTCAAGCCAGAGAATCTGCTGATCTCCACAGACTCACacgacatcaagctgctggacttcggctgtggagatctgaTGAAGGACTCGGCCTACAGATACTTTGCAGGCACTCCAGCTTTTGCTCCTCCTGAGTGGTTTCGGCATCATCGCTATCATGCCTCTCCACTGACAGTCTGGTCCATCGGCGTGACTCTCTACAACATCCTGTGCGACTGTTTCCCCTTCAGAGGCGCACAGAGGGTCACGTCCAAAAGCAGACTGCACTTCCCGAGGAAGCTGTCGACAGagtgccgtcagctgattcgctggtgtctcagtgcagcgCCAGCAGATCGGCCCAGTTTAGATGACATTGAGCGCCACCCCTGGTTGCAGTGA

Function

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0006468 protein phosphorylation biological_process
GO:0007346 regulation of mitotic cell cycle biological_process
GO:0016310 phosphorylation biological_process
GO:0046777 protein autophosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-459 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm.

Ensembl:

ensembl_id ENSDART00000142173

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00032118 lncRNA downstream 6490 19601696 ~ 19621644 (-) True XLOC_016292
TCONS_00033360 lncRNA downstream 33073 19592454 ~ 19595061 (-) True XLOC_016291
TCONS_00032114 lncRNA downstream 62861 19560092 ~ 19565273 (-) True XLOC_016288
TCONS_00033800 lncRNA downstream 245812 19379111 ~ 19382322 (-) True XLOC_016283
TCONS_00032104 lncRNA downstream 358837 19252270 ~ 19269297 (-) True XLOC_016280
TCONS_00033801 lncRNA upstream 494697 20124994 ~ 20148358 (-) False XLOC_016295
TCONS_00033802 lncRNA upstream 513960 20144257 ~ 20148003 (-) False XLOC_016295
TCONS_00033803 lncRNA upstream 513960 20144257 ~ 20148369 (-) False XLOC_016295
TCONS_00032125 lncRNA upstream 515842 20146139 ~ 20148035 (-) True XLOC_016295
TCONS_00033361 lncRNA upstream 823317 20453614 ~ 20462923 (-) False XLOC_016298
TCONS_00032115 mRNA downstream 51494 19574496 ~ 19576640 (-) False XLOC_016289
TCONS_00032111 mRNA downstream 107444 19518676 ~ 19520690 (-) True XLOC_016285
TCONS_00032110 mRNA downstream 107810 19518520 ~ 19520324 (-) False XLOC_016285
TCONS_00032105 mRNA downstream 273512 19280829 ~ 19354622 (-) False XLOC_016281
TCONS_00032106 mRNA downstream 306207 19281793 ~ 19321927 (-) True XLOC_016281
TCONS_00032122 mRNA upstream 193893 19824190 ~ 20120904 (-) False XLOC_016294
TCONS_00032121 mRNA upstream 193893 19824190 ~ 20120904 (-) False XLOC_016294
TCONS_00032123 mRNA upstream 195002 19825299 ~ 20052561 (-) True XLOC_016294
TCONS_00032126 mRNA upstream 632182 20262479 ~ 20323901 (-) True XLOC_016296
TCONS_00032127 mRNA upstream 814180 20444477 ~ 20470125 (-) False XLOC_016297
TCONS_00032117 other downstream 48455 19579582 ~ 19579679 (-) True XLOC_016290
TCONS_00032113 other downstream 68963 19539680 ~ 19559171 (-) True XLOC_016287
TCONS_00032112 other downstream 104451 19523586 ~ 19523683 (-) True XLOC_016286
TCONS_00032108 other downstream 114838 19506311 ~ 19513296 (-) False XLOC_016284
TCONS_00032109 other downstream 115490 19508100 ~ 19512644 (-) True XLOC_016284
TCONS_00032120 other upstream 4697 19634994 ~ 19635091 (-) True XLOC_016293
TCONS_00032124 other upstream 515444 20145741 ~ 20145825 (-) False XLOC_016295
TCONS_00032136 other upstream 1069184 20699481 ~ 20701863 (-) False XLOC_016302
TCONS_00032137 other upstream 1070791 20701088 ~ 20702736 (-) False XLOC_016302
TCONS_00032138 other upstream 1071929 20702226 ~ 20704523 (-) False XLOC_016302

Expression Profile

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