RNA id: TCONS_00032115


Basic Information

Item Value
RNA id TCONS_00032115
length 1357
RNA type mRNA
GC content 0.51
exon number 7
gene id XLOC_016289
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 19574496 ~ 19630297 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TATGACTCGATATATAAACACTGAAAGCGCTGAAAATCTTGGTTGAGAGAGGAGGCGAATTCAGAGACTTGCAGAGACTTTTGTGCTGAAACTGATTCTTCAAGAAGCCCTGAGGATTTCTGAGAGACATCGGAGGATATTTTCTTCGAAaagaatatataattattttaatcgtTCAGATTACTTGTTAAGACGCTTATTTTATtgctcttttgtcatttctgTTTTAGTTTGTGCCTTTTTTCTACTTGTTTGTTTGACATTTCAGTTGTCTTTTATTGATTTGTCATTATATTTTCTCTTGTTTGTATTTTCTCTTGTGGTGGAGTTTTGCAGGACGGTCTTCATGGCGCAAATGGCTGAAAGAGGAAGCCGCTCCAGATCCAGGAGTGCAGCTTTCACCCAGACAGCAGTTCAGGACACAGAGACACGGGACGCTTCTGGTGGGCTTCATGGTTATTTGGCTCCTCTGTCCTCTCTTTTGGCCGATTCAGTGTCCACAGatcagaggaagaggaagaggaagcaGCAAACGGCGTCCACCTCGTCTAGGAGACCtgccaaacgctctcgcagagACCAATATGCCaagggcccgttgctgggacgaggcggattcggctctgtgtttgctgggatccgcaggtctgatggactgccaGTGGCCATCAAGTACGTGTCTAAAGAGCCGACGGACACCAGACTGAAAGTTGACGGTCAGGGTCGTCTGCCACTGGAGGTGGCGTTAATGACCCGCGTCTCTTCAGCTCCTGTctgccccagtgtcctgcagctgctggactggtttgaccaTCGCAGACGCTACGTCCTGATCCTGGAGCGTCCGGCTccttgccaagatctccagagtttctgtgaggagaacggctgtctggacGAGCCtctggccaagaaagtgctggtgcagctgattgCGGCGCtgaaacactgcgagagccgccGCGTCCTGCACCGAGACGTCAAGCCAGAaaacctgctgatctccacagaCTCACacgacatcaagctgctggactttgGCTGTGGAGATCTGATGAAGGACTCGGCCTACAGATACTTTGCAGGCACTCCAGCTTTTGCTCCTCCTGAGTGGTTTCGGCATCATCGCTATCATGCCTCTCCACTGACAGTCTGGTCCATCGGCGTGACTCTCTACAACATCCTGTGCGACTGTTTCCCATTCAGAGGCGCACAGAGGGTCACGTCCAAAAGCAGACTGCACTTCCCGAGGAAGCTGTCGACAGagtgccgtcagctgattcgctggtgtctcagtgcagcgCCAGCAGATCGGCCCAGTTTAGATGACATTGAGCGCCACCCCTGGTTGCAGTGA

Function

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0006468 protein phosphorylation biological_process
GO:0007346 regulation of mitotic cell cycle biological_process
GO:0016310 phosphorylation biological_process
GO:0046777 protein autophosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-464 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm.

Ensembl:

ensembl_id ENSDART00000141021

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00032114 lncRNA downstream 9223 19560092 ~ 19565273 (-) True XLOC_016288
TCONS_00033800 lncRNA downstream 192174 19379111 ~ 19382322 (-) True XLOC_016283
TCONS_00032104 lncRNA downstream 305199 19252270 ~ 19269297 (-) True XLOC_016280
TCONS_00033799 lncRNA downstream 392927 19152372 ~ 19181569 (-) False XLOC_016278
TCONS_00032099 lncRNA downstream 392927 19152372 ~ 19181569 (-) True XLOC_016278
TCONS_00033360 lncRNA upstream 15814 19592454 ~ 19595061 (-) True XLOC_016291
TCONS_00032118 lncRNA upstream 25056 19601696 ~ 19621644 (-) True XLOC_016292
TCONS_00033801 lncRNA upstream 548354 20124994 ~ 20148358 (-) False XLOC_016295
TCONS_00033802 lncRNA upstream 567617 20144257 ~ 20148003 (-) False XLOC_016295
TCONS_00033803 lncRNA upstream 567617 20144257 ~ 20148369 (-) False XLOC_016295
TCONS_00032111 mRNA downstream 53806 19518676 ~ 19520690 (-) True XLOC_016285
TCONS_00032110 mRNA downstream 54172 19518520 ~ 19520324 (-) False XLOC_016285
TCONS_00032105 mRNA downstream 219874 19280829 ~ 19354622 (-) False XLOC_016281
TCONS_00032106 mRNA downstream 252569 19281793 ~ 19321927 (-) True XLOC_016281
TCONS_00032101 mRNA downstream 340027 19217586 ~ 19234469 (-) False XLOC_016279
TCONS_00032119 mRNA upstream 51494 19628134 ~ 19630297 (-) True XLOC_016289
TCONS_00032122 mRNA upstream 247550 19824190 ~ 20120904 (-) False XLOC_016294
TCONS_00032121 mRNA upstream 247550 19824190 ~ 20120904 (-) False XLOC_016294
TCONS_00032123 mRNA upstream 248659 19825299 ~ 20052561 (-) True XLOC_016294
TCONS_00032126 mRNA upstream 685839 20262479 ~ 20323901 (-) True XLOC_016296
TCONS_00032113 other downstream 15325 19539680 ~ 19559171 (-) True XLOC_016287
TCONS_00032112 other downstream 50813 19523586 ~ 19523683 (-) True XLOC_016286
TCONS_00032108 other downstream 61200 19506311 ~ 19513296 (-) False XLOC_016284
TCONS_00032109 other downstream 61852 19508100 ~ 19512644 (-) True XLOC_016284
TCONS_00032107 other downstream 211335 19362798 ~ 19363161 (-) True XLOC_016282
TCONS_00032117 other upstream 2942 19579582 ~ 19579679 (-) True XLOC_016290
TCONS_00032120 other upstream 58354 19634994 ~ 19635091 (-) True XLOC_016293
TCONS_00032124 other upstream 569101 20145741 ~ 20145825 (-) False XLOC_016295
TCONS_00032136 other upstream 1122841 20699481 ~ 20701863 (-) False XLOC_016302
TCONS_00032137 other upstream 1124448 20701088 ~ 20702736 (-) False XLOC_016302