RNA id: TCONS_00032123


Basic Information

Item Value
RNA id TCONS_00032123
length 3275
RNA type mRNA
GC content 0.51
exon number 20
gene id XLOC_016294
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 19824190 ~ 20120904 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGATGCCTGAAATGCGCAGACGCTCCATGCCAGAAAAGCTGCCCCACCAATTTGGATATCAAATCTTTCATCACCAGCATTTCCAACAAGAACTACTACGGTGCTGCTAAAGCAATCCTGTCCGATAACCCACTGGGTCTGACCTGTGGCATGGTGTGTCCCACCTCTGATCTGTGCGTTGGGGGCTGTAACCTCTACGCCTCTGAGGAAGGGCCTATCAATATTGGTGGGCTTCAGCAGTTCGCTACTGAGGTGTTCAGTAAGATGGGCATCCCTCAGATCAGGAATCCAGAGCTTCCCACGGCGGACAACATGCCGAAGAGTTTCCACACAAGGATCGCTCTCATTGGCTGCGGCCCTGCCAGCATCAGCTGCGCCTCCTTCCTGGCCCGGCTAGGATATGACAACATCACCATCTTCGAGAAGCAGAAATACATTGGTGGCTTGAGCACTTCAGAAATCCCTCAGTTCCGGTTGCCCTACGAGGTGGTGCAGTTTGAGATTGATCTGATGAAGGATCTTGGCGTAAAGGTTGTTCTTGAGAAGGGACTGGGGCAGAATGGCTTGACTCTGACCTCGCTGAAGGAGGAGGGCTATCAAGTGGTCTTCATTGGCATTGGTCTTCCACAAGCAAACAGGGACAAGATTTTCGAGGGCTTGACCACGGAACAGGGATTCTACACATCAAAGGATTTCCTTCCTTTGGTTGCAAAAGCCAGTAAAATAGGCATGTGTAATTGCCGCTCACAGCTGCCAAAGCTGCATGGGAATGTGATCGTCCTGGGTGCAGGAGACACAGCGTTCGACTGCGCCACCTCTGCTCTCCGCTGTGGAGCTCGACGAGTCTTTGTGGTCTTTAGAAAGGGCTTCACCAACATTCGCGCTGTTCCagaagagatggaGGCAGCCAAAGAGGAAAAGTGTGAATTCCTGCCCTTCTTGTCACCTCATGAGGTAATGAAGAAAAATGGACGTGTCTCAGGCCTGCGCTTCTGCCGCACAGAGCAGCAGGAGGATGGCACCTGGATTGTGGACGAAGAGCAAATTGTCCACCTGAAAGCAGATTTCATCATCAGTGCCTTTGGCTCCATGCTGAATGATCCAGCAGTGACGAAGGCCCTGGATCCAATAAAGCTGAACCGATGGGGGACTCCTGAGGTGAACAGCGAAACCATGCAGACCACTGAACCCTGGGTGTTCGCCGGCGGAGACATCGCAGGCTTTGCCAACACCACCGTGGAGTCTGTCAACGACGGCAAACAAGCTTCCTGGCACATTCACAAGTACATCCAGTCTCTTCATGGTAACACAATAAGTGCCACTCCCAGACTGCCCTTGTTCCACTGCGCCATTGACACAGTGGACATCAGCGTGGAGATGTGCGGGATCAAGTTTCCTAACCCCTTTGGACTGGCCAGCGCTCCTCCCACGACCAGCGCAGCCATGATCCGCAGGGCCTTCGAGCAGGGCTGGGGGTTCGCCCTCACCAAGACCTTTGGCCTGGACAAGGATTTGGTGACCAACGTGTCACCGCGAATCGTGCGTGGGACAACCTCAGGTCACATATTCGGTCCTGGTCAGGGCTCATTCCTCAACATCGAGCTCATTAGTGAAAAAACTGCCGCTTACTGGTGCAAGAGCGTGGCTGAACTCAAAGCCGACTTCCCCAAAAATATTATCATTGCCAGTATTATGTGCAGTTACAACCAAGCTGACTGGACTGAGCTGGCAAAGATGGCTCAGGAGTCTCAAGCTGATGCTTTGGAGCTGAACCTCTCCTGCCCTCATGGCATGGGGGAGAGAGGTATGGGACTGGCCTGTGGACAGGACCCTGAGCTGGTGAGGAACATCTGTCGCTGGGTTAGAAAGGCCACTAGCATCCCCTTCTTCGCCAAACTCACACCCAATGTTACCAACATCGTTGACATCGCCACAGCTGCTTATGAAGgaGGTGCGGATGGAGTCACAGCCACCAACACTGTATCTGGACTAATGGCCCTCAAAGCCGATGCTACACCCTGGCCTGGGATTGGCAGAGGCGCCAGAACTACATATGGCGGTGTTTctgGTAATGCAATCCGGCCCATAGCTCTACGTGCAGTTTCAGCTATAGCAAGAGCACTTCCTGGCTTCCCAATCTTGGCCACAGGTGGCATCGACTCGGCTGAGTCTGGATTACAGTTCCTCCATGCTGGAGCATCTGTGTTGCAGGTATGCAGTGCCGTGCAGAACCAGGACTTCACAGTGATCGAGGACTACTGTTTAGGCCTGAAGGCGCTGCTGTATCTAAAAAGCATAGAGGAGCTGCACGATTGGGACGGCCAGTCTCCTCCCACCATTCGCCACCAGAAGGGCAAGCCCGTTCCCCATGTGAGCGAGCTCATTGGAAAGAGTCTGCCTAGTTTCGGGCCGTACTTGCAAACGAAGACTCAGGCACTGGCGAAGTACAAGAAAGATGCCAGCGGTGATGTGATCATGGACACCGGCGCTGCTAGAGTAAACATCCCCAAAAAACCAATCCCTAATGTCAAAGATGTGATTGCCCGAGCGCTGAGGCACATTGGCGCCTACCAAGAGCTGGACAACACTGAACAAGTGCAGGCCCTGGTGGATCCTGAGATGTGCATCAACTGTGGCAAATGCTACATGACCTGCAATGACTCAGGCTACCAGGCTATTAAGTTTGACCCTGAGACTCATCTTCCTGTAATCACGGACAGCTGCACCGGCTGCACTCTCTGCCTGAGCGTGTGTCCCATCATTGACTGCATCAAAATGGTTAGCAGGACCACACCGTACGAGCCCAAGAGAGGCCTGCCCGTTAATCCCGTCTGCTGAAGCACACCGTCACAGAGCGAATGACAAAAAACAGCAAGAGCATCCATTCCACTTCTAATTGCTGGGTGAAAAATTACCTTTATTATGAAAACGAATAATTAGCCGGCAGAAATAATTGCCTTATATTCCCAAGCCGGTTATGCCAGAATAATTGCGCTGGCACAGAAAGAGTTGCATTTTTTCAAAAACAACTCGACAGTGCAATGTGCCTTTCTGTCCCTTTTCCCTCAAGAGATGACAAAGAGATGACAATAAGATGTGAGATggaggattgattgattgattgattgattgattgattgattgattgaagtgGTGTTGTTTGCTCTGGTAAGACTgaccataaataaacagtaaaggAGGAATATTAATAATTGGAACTATCAAAGATAATTGTATGACTGCTAAGTGtgattaataaacattattagcATGTA

Function

GO:

id name namespace
GO:0019483 beta-alanine biosynthetic process biological_process
GO:0006210 thymine catabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0006212 uracil catabolic process biological_process
GO:0006214 thymidine catabolic process biological_process
GO:0005829 cytosol cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0002058 uracil binding molecular_function
GO:0050661 NADP binding molecular_function
GO:0017113 dihydropyrimidine dehydrogenase (NADP+) activity molecular_function
GO:0051536 iron-sulfur cluster binding molecular_function
GO:0051539 4 iron, 4 sulfur cluster binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2459 Predicted to enable several functions, including NADP binding activity; dihydropyrimidine dehydrogenase (NADP+) activity; and uracil binding activity. Predicted to be involved in thymidine catabolic process; thymine catabolic process; and uracil catabolic process. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Is expressed in intestinal bulb; liver; pronephric duct; and yolk syncytial layer. Human ortholog(s) of this gene implicated in acute lymphoblastic leukemia; dihydropyrimidine dehydrogenase deficiency; and pancreatic cancer. Orthologous to human DPYD (dihydropyrimidine dehydrogenase).

Ensembl:

ensembl_id ENSDART00000100133

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00032118 lncRNA downstream 203655 19601696 ~ 19621644 (-) True XLOC_016292
TCONS_00033360 lncRNA downstream 230238 19592454 ~ 19595061 (-) True XLOC_016291
TCONS_00032114 lncRNA downstream 260026 19560092 ~ 19565273 (-) True XLOC_016288
TCONS_00033800 lncRNA downstream 442977 19379111 ~ 19382322 (-) True XLOC_016283
TCONS_00032104 lncRNA downstream 556002 19252270 ~ 19269297 (-) True XLOC_016280
TCONS_00033801 lncRNA upstream 72433 20124994 ~ 20148358 (-) False XLOC_016295
TCONS_00033802 lncRNA upstream 91696 20144257 ~ 20148003 (-) False XLOC_016295
TCONS_00033803 lncRNA upstream 91696 20144257 ~ 20148369 (-) False XLOC_016295
TCONS_00032125 lncRNA upstream 93578 20146139 ~ 20148035 (-) True XLOC_016295
TCONS_00033361 lncRNA upstream 401053 20453614 ~ 20462923 (-) False XLOC_016298
TCONS_00032116 mRNA downstream 195002 19574650 ~ 19630297 (-) False XLOC_016289
TCONS_00032119 mRNA downstream 195002 19628134 ~ 19630297 (-) True XLOC_016289
TCONS_00032115 mRNA downstream 248659 19574496 ~ 19576640 (-) False XLOC_016289
TCONS_00032111 mRNA downstream 304609 19518676 ~ 19520690 (-) True XLOC_016285
TCONS_00032110 mRNA downstream 304975 19518520 ~ 19520324 (-) False XLOC_016285
TCONS_00032126 mRNA upstream 209918 20262479 ~ 20323901 (-) True XLOC_016296
TCONS_00032127 mRNA upstream 391916 20444477 ~ 20470125 (-) False XLOC_016297
TCONS_00032128 mRNA upstream 395673 20448234 ~ 20470140 (-) True XLOC_016297
TCONS_00032129 mRNA upstream 502833 20555394 ~ 20599315 (-) False XLOC_016300
TCONS_00032130 mRNA upstream 503624 20556185 ~ 20574193 (-) True XLOC_016300
TCONS_00032120 other downstream 190208 19634994 ~ 19635091 (-) True XLOC_016293
TCONS_00032117 other downstream 245620 19579582 ~ 19579679 (-) True XLOC_016290
TCONS_00032113 other downstream 266128 19539680 ~ 19559171 (-) True XLOC_016287
TCONS_00032112 other downstream 301616 19523586 ~ 19523683 (-) True XLOC_016286
TCONS_00032109 other downstream 312655 19508100 ~ 19512644 (-) True XLOC_016284
TCONS_00032124 other upstream 93180 20145741 ~ 20145825 (-) False XLOC_016295
TCONS_00032136 other upstream 646920 20699481 ~ 20701863 (-) False XLOC_016302
TCONS_00032137 other upstream 648527 20701088 ~ 20702736 (-) False XLOC_016302
TCONS_00032138 other upstream 649665 20702226 ~ 20704523 (-) False XLOC_016302
TCONS_00032139 other upstream 650145 20702706 ~ 20704523 (-) True XLOC_016302

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_05490354_05581387.mRNA True 3662 mRNA 0.50 24 CI01000004 5490170 ~ 5581387 (-)
bowfin (Amia calva) AMCG00005116 True 456 mRNA 0.45 3 CM030140.1 15753182 ~ 15755418 (+)