XLOC_016300 (si:ch211-267e7.3)


Basic Information

Item Value
gene id XLOC_016300
gene name si:ch211-267e7.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 20555394 ~ 20599315 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032129
CTGTGGTGAAGATCAGGGGGGCGAGGTCTGCTTGTTCTCAAATGAACCATGTACTGTCTCTGGACGGCAAGAGTCGGACACACTCTACTACCATACTTTCTCATACACGTATGGATTATTAATACAGCAGCAGGTGTAAATGTTAAGGACAGCAGTGAGGGGAGGGAGGATTTGCAGAGGCATCCAGACGAGGTAGCGCAGTGGTGGGGTGAATGGAGCAGCTGGTCCACCTGTTCCCGTACCTGTGGAGGAGGAGTGCGCTCTCAGGAACGTCACTGTCTGCAACAGAGACTGACGTCGACCCAAAACATCAACAGTTCTTTCTGCATTGGACCTTCAAAACAGTATCAGCTGTGCACAAATCAGCCGTGCCCAAACAGCAGAATCAGCTTCAAACAGCACCAGTGCTCTCAATTCAATGCCAAAGCCTTCAGCAGGAAGCACTATGAGTGGGTTCCACTTTATCCGGATGATTACATCAACATCTCCAATAAGCCATGTGACCTCCAGTGCACTACAACCACAGGGGAGAGGCAACTACTGGTTCCTGCTCATGATGGGACGTTCTGCAGGGACGGCATTTACCAGGGGGTTTGCATTGAAGGCCAGTGTCAGGTAGTCGGGTGTGATGGGAAACTGTATTCCAGTAAAACCATAGACAAATGTGGAGTCTGTGGTGGAAACGGCGCTTCATGTTATCGTGTCTCAGGAACTTACCGGAAGGGGATCACACAGTTAGGTTATGTGTTTATAACCAATATACCAGTTGGTGCTACTGACATCCAAATCATAGAGAGGCGTAAAACTGAAAATATCTTGGCTCTTTCTGATGAAGCTGGCCACTTCTTCTTCAATGGCAACAGTGTGATTGACAATCCACAAAACTTTCATGTTGCCGGGACGGTCTTTAAATACAGGAGGCCTGCAAACCTCTTCTCTGATGGCTTTGAGTACATCATGGCTCAGGGTCCCACCCAGCAGGCCCTGAATGTCATGTATTACAACCTCAATGGAAAGATGCCTCACATCACATATGAATACACAGTTCCTCGAGCTCCGGCTTTTCCAATGACCTCTACGCCCGAACAACCTCAGATCAGCAACCTGATGTCAAAGACGTCTAGAGACTCCTCAGTGGCCGAGCCCAAGGGCAACACGTCCTCAACAGAGCATAACGAAATTGGGGCCCGGAAGCAGCATGAAAAGAAAAGCAATCAGAGCAGTTCACTGGTTCCTCAGGATAATGTAGATGTGCACGAGGAGCTGCTGTGGGGGCTTCAGGCCTCTGTGAACTTCAGTGAACTGCCTGCTCTGGTGCTGTTTAGACCGGCCAGTGAGGTCCTTCAGAATGAATTGGATGATGAAATACACCATCTTGAGGCACAAGAGAATTTTGGCCCCGATTCCAACCTGATTGATGGTGATTCGTCCAGTTCCAGTGACTCAAACACCTCCATCCCTCTCCTGAAGAGTCTCCTCTATGACGGGGCATCATGGTCCTCCAGACAGCCCTGTAAAGACTCATCTGCACTCTCCGGCTGTTCTATACTCAAGCTCAACTCCAGTGCACCACTGGACAACAGCTTGACCCTGGAGATCTACCCGGGCAGTCTGGACCTGCACAGTCCTGATGGAGAGCCCAGGACCAACGACTCCACCAACCACCAGTCCAACATCCTCCAGCTCCACCAGATGGAGCCAGTGCAGGCCCCCCACAGCGAGAGTAATGAGTTTGAGGTAGAATCGCTGGATCATGACGTCAGCATGTCGGACATGTATAGATGGAAGGTTTCTGCTTATGCACCTTGCAGCTCAACATGTACAACAGGTATAAGCACATCATATGCGTTGTGTGTAAAGTATGATGGGACAGAAGTGGACGAGAGTTACTGTGATGCTTTGACCAGGCCGGAGCCAACACATGAGTTCTGCACAGGGAAAGAGTGCCTGCCCAGGTGGGAGACGAGTCGCTGGAGTGAGTGTTCTCGAACATGTGGAGAGGGCTTTCAGTTCCGCACGGTGCGCTGCTGGAAGATGATGGCACCAGGGTTCGACAGCTCTGTGTATGATGAGCTCTGTCAGGCCGTGGAGCTGCAGAAACCCATGACGAGGAAAGCCTGCAAGAGCAAGAGCTGCGGCCCACAGTGGGAGATCTCAGACTGGTCTGAGtGTTCAGCGCGGTGTGGTGGCCGAGGGGTGAGGAGTCGTGATGTCCGCTGTTCAATGGAGGCCAGACTTTGTAATGAGTCCACCAAACCAGTCAGCCAGAGAGAGTGTGAGGGGCCGCCCTGTGACCGCAGGTGGACCGTCTCTGACTGGGGCCCGTGCTCAGGGCCGTGTGGGGAGGGCAGGATGAAACGGTACGTGGTGTGTAAGAACAGCAATGGGAAGGTGATTTCCGATGGTCAATGTGATCCAGAGCTGAAGCCACTGGCAGTACATCCATGCGGCGACAAAAACTGCCCCGCTCACTGGGTGGAGCAGGAGTGGGAACAGTGTAACTCCACGTGTGGCCGTGGGGTGAAGACACGTCAGGTGGTGTGTGCAGGGCTGGAGGCTGGTGTGTTTAAAGAGTTTCCTGAGCGGATGTGTGACAGAGCCCTCAGACCTGCAGATACCGCGGCCTGCTTTGAGAGACCCTGCTCCAAGTGGTTCACAACATCCTGGTCCCAGTGCAGTAAGACGTGTGGGATTGGAGTGCGAGTACGAGAGGTGAAGTGTTATCAAGGAGAAGAGCTCGGCCACAGCTGTGATACAACACTGAGACCAGAGGCCAGACAGAGCTGTGAGGTTCAGCCCTGCACCACTGAACCACCAGCTGATGATGCGTGTCAAGATAAACCGACTGCTAACTGTGCCCTGGTGCTGCGGGTGAAGCTGTGCACTCACTGGTACTACAGGAAGGCCTGTTGTCTGTCCTGCAGGAACAAAAGCCAATGATGTCCCTCCTTTACATACTGGACGCACTGAACCCAGAACCCCCCCAACCCCCTCTCAACGCTGGCAGTCACCTCTCAATAAAGAACGGTGCTAAATCAGAAGGGCACTGGCCCTCTGGTGGTCCTGCGGGACCCCATAAAGGCAGCTCCTGTAACTGGACAGCAGAGGAGCCGTGGGTCTACTGATCATACAGACAAACACTCCTCCTGTGTACTgtactgctcacacacacacacacacacacaaactcacagacATGGCGTATGATATATGTACAAAGTTTGTTCTTGTTTGTATTTGTGTCCACTTTTGCTTTagaagaagaaataaaactaaagtggTTTTGACAtctgtttttgcagtttttttcacacacaaacacactgtaaacTAAAGCTGCTTTCAGTTCCATGCTTTGGGTATTAAACAGTCAAGATATGagatacaaatacatttatttcattcAGGTTTTATTATATACACTACATATAAATATAACAGAACAATGACATTTTGTGTTAGAACAGctataaaatgaattattacttGCTATAATGGCCCTGACCATAGAAAAGGGTTGTTTTAGCTTTGTTTCAAAACAAATTTGACATCCAAtttgagtaaaatatatataataaacatctCCTgagttatttttaatatatttttaccgTATCTCAAACCCAACTGTtgaatttgtccatattttacccaagcCCAGTATAAAATTTAAAGGTGCCATTTACTGCATTGAATCAAcgagttaaattgttctctgatatctgcAAAGT
>TCONS_00032130
ATGTATAGATGGAAGGTTTCTGCTTATGCACCTTGCAGCTCAACATGTACAACAGGTATAAGCACATCATATGCGTTGTGTGTAAAGTATGATGGGACAGAAGTGGACGAGAGTTACTGTGATGCTTTGACCAGGCCGGAGCCAACACATGAGTTCTGCACAGGGAAAGAGTGCCTGCCCAGGTGGGAGACGAGTCGCTGGAGTGAGTGTTCTCGAACATGTGGAGAGGGCTTTCAGTTCCGCACGGTGCGCTGCTGGAAGATGATGGCACCAGGGTTCGACAGCTCTGTGTATGATGAGCTCTGTCAGGCCGTGGAGCTGCAGAAACCCATGACGAGGAAAGCCTGCAAGAGCAAGAGCTGCGGCCCACAGTGGGAGATCTCAGACTGGTCTGAGtGTTCAGCGCGGTGTGGTGGCCGAGGGGTGAGGAGTCGTGATGTCCGCTGTTCAATGGAGGCCAGACTTTGTAATGAGTCCACCAAACCAGTCAGCCAGAGAGAGTGTGAGGGGCCGCCCTGTGACCGCAGGTGGACCGTCTCTGACTGGGGCCCGTGCTCAGGGCCGTGTGGGGAGGGCAGGATGAAACGGTACGTGGTGTGTAAGAACAGCAATGGGAAGGTGATTTCCGATGGTCAATGTGATCCAGAGCTGAAGCCACTGGCAGTACATCCATGCGGCGACAAAAACTGCCCCGCTCACTGGGTGGAGCAGGAGTGGGAACAGTGTAACTCCACGTGTGGCCGTGGGGTGAAGACACGTCAGGTGGTGTGTGCAGGGCTGGAGGCTGGTGTGTTTAAAGAGTTTCCTGAGCGGATGTGTGACAGAGCCCTCAGACCTGCAGATACCGCGGCCTGCTTTGAGAGACCCTGCTCCAAGTGGTTCACAACATCCTGGTCCCAGTGCAGTAAGACGTGTGGGATTGGAGTGCGAGTACGAGAGGTGAAGTGTTATCAAGGAGAAGAGCTCGGCCACAGCTGTGATACAACACTGAGACCAGAGGCCAGACAGAGCTGTGAGGTTCAGCCCTGCACCACTGAACCACCAGCTGATGATGCGTGTCAAGATAAACCGACTGCTAACTGTGCCCTGGTGCTGCGGGTGAAGCTGTGCACTCACTGGTACTACAGGAAGGCCTGTTGTCTGTCCTGCAGGAACAAAAGCCAATGA

Function

symbol description
si:ch211-267e7.3 Predicted to enable metalloendopeptidase activity. Predicted to be involved in extracellular matrix organization. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix.

GO:

id name namespace
GO:0030198 extracellular matrix organization biological_process
GO:0031012 extracellular matrix cellular_component
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008233 peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-265 Predicted to enable metalloendopeptidase activity. Predicted to be involved in extracellular matrix organization. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix.

Ensembl:

ensembl_id ENSDARG00000075487

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032129 False 3731 mRNA 0.49 18 20555394 20599315
TCONS_00032130 True 1167 mRNA 0.56 8 20556185 20574193

Neighbor

gene id symbol gene type direction distance location
XLOC_016297 frrs1a coding downstream 85254 20444477 ~ 20470140 (-)
XLOC_016298 NA coding downstream 92471 20453614 ~ 20462923 (-)
XLOC_016299 NA coding downstream 96385 20457947 ~ 20459009 (-)
XLOC_016296 plppr5a coding downstream 231493 20262479 ~ 20323901 (-)
XLOC_016295 NA coding downstream 407025 20124994 ~ 20148369 (-)
XLOC_016301 dusp12 coding upstream 58944 20658259 ~ 20715094 (-)
XLOC_016302 AL954134.1 coding upstream 100166 20699481 ~ 20704523 (-)
XLOC_016303 FO681336.1 coding upstream 158267 20757582 ~ 20757699 (-)
XLOC_016304 CABZ01020455.1 coding upstream 163974 20763289 ~ 20788698 (-)
XLOC_016305 tpra coding upstream 212362 20811677 ~ 20866758 (-)
XLOC_016293 BX088713.2 non-coding downstream 920303 19634994 ~ 19635091 (-)
XLOC_016292 BX088713.1 non-coding downstream 933750 19601696 ~ 19621644 (-)
XLOC_016311 NA non-coding upstream 522873 21122188 ~ 21124115 (-)
XLOC_016313 NA non-coding upstream 596213 21195528 ~ 21208559 (-)
XLOC_016314 CU464125.1 non-coding upstream 713427 21312742 ~ 21320684 (-)

Expression


Co-expression Network