RNA id: TCONS_00032114


Basic Information

Item Value
RNA id TCONS_00032114
length 333
lncRNA type lincRNA
GC content 0.47
exon number 3
gene id XLOC_016288
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 19560092 ~ 19565273 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCTGTTTTTCTCTTACAGCCTTAAGAGGTGTCAGTGGAGCAAAATCAGCTCCTCTtttaccaaaatccaacatcaaacCTGCAGTCCGGAGCTCTTCCCCATCTACAGCCAGTGTTTCAGAGGAACCAGATGATCAATCCAGCAAAGGTGTCAACGGGCTACTCCAGCATGAACCAGTCATGGTAAGGCATCTGTCCTAGAAGAATTCTGTGCTCTGGAATCTGCTGCAGACAAGCCCACATCAGATCACAGCATTCTGTGAAAAACAAAAGGAGAgGTCTCATCATCTGCTGTAAGACTCAGTGCAGAATCATCAGCGGAGTCATCTTGTGA

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0031099 regeneration biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000156172

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033800 lncRNA downstream 177770 19379111 ~ 19382322 (-) True XLOC_016283
TCONS_00032104 lncRNA downstream 290795 19252270 ~ 19269297 (-) True XLOC_016280
TCONS_00033799 lncRNA downstream 378523 19152372 ~ 19181569 (-) False XLOC_016278
TCONS_00032099 lncRNA downstream 378523 19152372 ~ 19181569 (-) True XLOC_016278
TCONS_00033798 lncRNA downstream 378539 19152372 ~ 19181553 (-) False XLOC_016278
TCONS_00033360 lncRNA upstream 27181 19592454 ~ 19595061 (-) True XLOC_016291
TCONS_00032118 lncRNA upstream 36423 19601696 ~ 19621644 (-) True XLOC_016292
TCONS_00033801 lncRNA upstream 559721 20124994 ~ 20148358 (-) False XLOC_016295
TCONS_00033802 lncRNA upstream 578984 20144257 ~ 20148003 (-) False XLOC_016295
TCONS_00033803 lncRNA upstream 578984 20144257 ~ 20148369 (-) False XLOC_016295
TCONS_00032111 mRNA downstream 39402 19518676 ~ 19520690 (-) True XLOC_016285
TCONS_00032110 mRNA downstream 39768 19518520 ~ 19520324 (-) False XLOC_016285
TCONS_00032105 mRNA downstream 205470 19280829 ~ 19354622 (-) False XLOC_016281
TCONS_00032106 mRNA downstream 238165 19281793 ~ 19321927 (-) True XLOC_016281
TCONS_00032101 mRNA downstream 325623 19217586 ~ 19234469 (-) False XLOC_016279
TCONS_00032115 mRNA upstream 9223 19574496 ~ 19576640 (-) False XLOC_016289
TCONS_00032116 mRNA upstream 9377 19574650 ~ 19630297 (-) False XLOC_016289
TCONS_00032119 mRNA upstream 62861 19628134 ~ 19630297 (-) True XLOC_016289
TCONS_00032122 mRNA upstream 258917 19824190 ~ 20120904 (-) False XLOC_016294
TCONS_00032121 mRNA upstream 258917 19824190 ~ 20120904 (-) False XLOC_016294
TCONS_00032113 other downstream 921 19539680 ~ 19559171 (-) True XLOC_016287
TCONS_00032112 other downstream 36409 19523586 ~ 19523683 (-) True XLOC_016286
TCONS_00032108 other downstream 46796 19506311 ~ 19513296 (-) False XLOC_016284
TCONS_00032109 other downstream 47448 19508100 ~ 19512644 (-) True XLOC_016284
TCONS_00032107 other downstream 196931 19362798 ~ 19363161 (-) True XLOC_016282
TCONS_00032117 other upstream 14309 19579582 ~ 19579679 (-) True XLOC_016290
TCONS_00032120 other upstream 69721 19634994 ~ 19635091 (-) True XLOC_016293
TCONS_00032124 other upstream 580468 20145741 ~ 20145825 (-) False XLOC_016295
TCONS_00032136 other upstream 1134208 20699481 ~ 20701863 (-) False XLOC_016302
TCONS_00032137 other upstream 1135815 20701088 ~ 20702736 (-) False XLOC_016302

Expression Profile

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