RNA id: TCONS_00032134


Basic Information

Item Value
RNA id TCONS_00032134
length 789
RNA type mRNA
GC content 0.46
exon number 8
gene id XLOC_016301
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 20658259 ~ 20715094 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAGTAAGCACGTGAGTGTAAAAGCGTCAATGTTTACAGTAAAGTCATCATTAGAAAAGCTGCAGGCAGATTGTTAACCATGATACCCGTGGCGTCTGGACTCTACATCGGGTCAGTGTCTGATCTGAAGGATGCTGAGAGTCTGTCAGCTGCAGACCTGCTGAGCAGACTAGATGACTGTACCAGCTTTATTTCTGAAGCCCTTAGCACACAAGCTGACTCCAAATCAGCAGCAGTTCTTGTGCATTGCCATGTGGGGCAAAGCAGAAGTGCTGCAGTGGTGACTGCTTACCTGATGAAAACACAGCACCTGACCTTACAGGAAGCATATTCTAAACTGCAAAACATAAAACCAGATGTCAAAATGAATGAAGAGTTTCTGGATCAGCTGGCACTTTATGAATTGATGGACTGTAAAGTGGACACCACAAGTCCTGTTTACAAACAGTTTAGGCTGAAAAAGATTACAGAGAAATATCCAGAGCTCCAGAATGTGCCAAAAGATGTATTTGCTGTTGACCCTGCACAAACCCAGAATGCAGAAGCTGTATACAGATGTAGAAAGTGCAgACGCACACTTTTCCGACACTCCAGCATTCTCAGTCACTGTGTGGGAAGTGGAGCGTCTGCCTTCTCTCATAAGAAGACACGGATTGTGAGCTCTTCAGCTGAAGATGAGACACAGTGCACTTCCTATTTTATAGAGCCGGTGCAGTGGATGGAGCAGGCTTTACTAGGGGTCATGGATGGACAGCTTCTGTGTCCCAAGTGCAGCTCAAAGCTGGGCTC

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0016311 dephosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0008138 protein tyrosine/serine/threonine phosphatase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0016791 phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
ko01009 Protein phosphatases and associated proteins
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-050626-91 Predicted to enable protein tyrosine/serine/threonine phosphatase activity. Predicted to be involved in protein dephosphorylation. Predicted to act upstream of or within dephosphorylation. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human DUSP12 (dual specificity phosphatase 12).

Ensembl:

ensembl_id ENSDART00000143437

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033361 lncRNA downstream 198450 20453614 ~ 20462923 (-) False XLOC_016298
TCONS_00033362 lncRNA downstream 198464 20456287 ~ 20462909 (-) True XLOC_016298
TCONS_00033363 lncRNA downstream 202364 20457947 ~ 20459009 (-) True XLOC_016299
TCONS_00033803 lncRNA downstream 513004 20144257 ~ 20148369 (-) False XLOC_016295
TCONS_00033801 lncRNA downstream 513015 20124994 ~ 20148358 (-) False XLOC_016295
TCONS_00032145 lncRNA upstream 252251 20919171 ~ 20920335 (-) True XLOC_016307
TCONS_00033804 lncRNA upstream 455268 21122188 ~ 21124115 (-) True XLOC_016311
TCONS_00032151 lncRNA upstream 498885 21165805 ~ 21166754 (-) True XLOC_016312
TCONS_00033805 lncRNA upstream 528608 21195528 ~ 21197037 (-) False XLOC_016313
TCONS_00033806 lncRNA upstream 528608 21195528 ~ 21208559 (-) False XLOC_016313
TCONS_00032129 mRNA downstream 62058 20555394 ~ 20599315 (-) False XLOC_016300
TCONS_00032130 mRNA downstream 87180 20556185 ~ 20574193 (-) True XLOC_016300
TCONS_00032128 mRNA downstream 191233 20448234 ~ 20470140 (-) True XLOC_016297
TCONS_00032127 mRNA downstream 191248 20444477 ~ 20470125 (-) False XLOC_016297
TCONS_00032126 mRNA downstream 337472 20262479 ~ 20323901 (-) True XLOC_016296
TCONS_00032141 mRNA upstream 96369 20763289 ~ 20788698 (-) True XLOC_016304
TCONS_00032142 mRNA upstream 144757 20811677 ~ 20866758 (-) True XLOC_016305
TCONS_00032143 mRNA upstream 216034 20882954 ~ 20890429 (-) True XLOC_016306
TCONS_00032144 mRNA upstream 249577 20916497 ~ 20923864 (-) False XLOC_016307
TCONS_00032146 mRNA upstream 313242 20980162 ~ 20981907 (-) True XLOC_016308
TCONS_00032124 other downstream 515548 20145741 ~ 20145825 (-) False XLOC_016295
TCONS_00032120 other downstream 1026282 19634994 ~ 19635091 (-) True XLOC_016293
TCONS_00032117 other downstream 1081694 19579582 ~ 19579679 (-) True XLOC_016290
TCONS_00032113 other downstream 1102202 19539680 ~ 19559171 (-) True XLOC_016287
TCONS_00032112 other downstream 1137690 19523586 ~ 19523683 (-) True XLOC_016286
TCONS_00032136 other upstream 32561 20699481 ~ 20701863 (-) False XLOC_016302
TCONS_00032137 other upstream 34168 20701088 ~ 20702736 (-) False XLOC_016302
TCONS_00032138 other upstream 35306 20702226 ~ 20704523 (-) False XLOC_016302
TCONS_00032139 other upstream 35786 20702706 ~ 20704523 (-) True XLOC_016302
TCONS_00032140 other upstream 90662 20757582 ~ 20757699 (-) True XLOC_016303

Expression Profile

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