XLOC_016308 (lyrm4)


Basic Information

Item Value
gene id XLOC_016308
gene name lyrm4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 20980162 ~ 20981907 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032146
GTGTCCCTAATGGCGGATTCTCACTCTAGATGGCGATGTTTTATACGAAACGCAACGTAACAAGAGAAGAAGCACGACACGGAAGTCAACATGGCGTCGTGCAGCAGGGCTCAAGTGATCTCCCTTTACAGGATGCTTATGAAGGAGAGCAAAAAATTCCCCTCATACAATTACAGAACATACGCACTTCGCAGAGTGAAGGATGGCTTCAGGGAAAACCTTCACGTTGACAATCCCAGAACACTGGATTTGCTCATAAATCAAGCGAGAGAAAATCTGGCAGTCATCAAAAGACAGGTTTCCATTGGTCATCTATATTCAGCTCAGAGGACCGTTGTGGAAAAAGAGCCTCATTTATAAATGTCTTCAGGATCAAGAATAGGTGCCCATGAAATATGGGTTGTGGATGATAAATCAGTGTAACCAATGAGCCGCACCACTGTCTGTTATTGTACATTAGAGGAAACTTTAAATGTAACATgttgatgtaaataaatatatatctcaAGCAAATAAATACGTATTAAGCATGTAAA

Function

symbol description
lyrm4 Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 19. Orthologous to human LYRM4 (LYR motif containing 4).

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-081104-295 Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 19. Orthologous to human LYRM4 (LYR motif containing 4).

Ensembl:

ensembl_id ENSDARG00000078352

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032146 True 536 mRNA 0.41 3 20980162 20981907

Neighbor

gene id symbol gene type direction distance location
XLOC_016307 ptgs2a coding downstream 56298 20916497 ~ 20923864 (-)
XLOC_016306 pdca coding downstream 89733 20882954 ~ 20890429 (-)
XLOC_016305 tpra coding downstream 113404 20811677 ~ 20866758 (-)
XLOC_016304 CABZ01020455.1 coding downstream 191464 20763289 ~ 20788698 (-)
XLOC_016303 FO681336.1 coding downstream 222463 20757582 ~ 20757699 (-)
XLOC_016309 nrn1b coding upstream 10078 20991985 ~ 20994126 (-)
XLOC_016310 nebl coding upstream 94678 21076585 ~ 21082695 (-)
XLOC_016311 NA coding upstream 140281 21122188 ~ 21124115 (-)
XLOC_016312 bmi1b coding upstream 183023 21164930 ~ 21170517 (-)
XLOC_016313 NA coding upstream 213621 21195528 ~ 21208559 (-)
XLOC_016302 AL954134.1 non-coding downstream 275639 20699481 ~ 20704523 (-)
XLOC_016298 NA non-coding downstream 517239 20453614 ~ 20462923 (-)
XLOC_016299 NA non-coding downstream 521153 20457947 ~ 20459009 (-)
XLOC_016295 NA non-coding downstream 831793 20124994 ~ 20148369 (-)
XLOC_016314 CU464125.1 non-coding upstream 330835 21312742 ~ 21320684 (-)
XLOC_016316 NA non-coding upstream 399418 21381325 ~ 21383394 (-)
XLOC_016318 NA non-coding upstream 559699 21541606 ~ 21542043 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_07254370_07254880 LYRM4 misc CI01000004 null 7254370 ~ 7255602 (+)
eurasian perch (Perca fluviatilis) G23759 NA non-coding NC_053113.1 CM020910.1 43823067 ~ 43823415 (-)
bowfin (Amia calva) G25588 NA non-coding CM030123.1 CM030123.1 26313363 ~ 26313565 (+)