XLOC_000164 (clta)


Basic Information

Item Value
gene id XLOC_000164
gene name clta
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 12348213 ~ 12361930 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000294
CGTTTTATCTTAAGTCCCTCCCCACTGACATTGGAGCCGTCGACGAGGAAGACAGTAGGGTGATTAGTGTTTTCGGTTGTTCTCCCTCTGAGCACATTCAGCAAGCCATGGACGATTTCGATATGCTCAGTGCCCCTCAAGGAAGCGCAGGGAACGGTGTCGGGGCAGACGAGGACCCGGCGGCGGCATTTCTGGCCCAGCAAGAGAGCGAGATCGCTGGCATCGAGAATGACGAGGGCTTCAGCATCCTGGACAGCGGAGATGTGCCTTCGTCCCTGAGCCAAGACCAGGACGGTGGAGCAATGAATGGAGATCTGCATGGGGAGAGTAATGGCCCTTCAGATGTGTACGCGGCCATCTCCAGTGTGGATCGGTTGCAGGCTGAGCCGGAGAGCTTGAGGAAGTGGAGAGAGGAGCAGCGAGATAGGCTGGAGGAGCTCGATGCGAACTCGCGTAAACAGGAGGCCGAGTGGAAAGAGAAGGCAAAGCTGGAGCTGGAGGAATGGCACACCAGGCAGAACGAGCAGCTGGAGAAAACCAAAGTCAACAACAGGGCGGCTGAGGAAGCCATGGTGTCGGAGCTGGATGAAAACAGTCCTGGCACAGAATGGGAACGTGTGGCGCGTCTTTGCGATTTCAACCCTAAATCCAGCAAGCAGGCAAAGGATGTGTCCCGCATGCGTTCAGTGCTCATCTCTCTTAAACAGGCTCCGCTCGTCCGCTAAACAGCTTCAAAGTAAACGAAAATCCAACA
>TCONS_00000295
CCCCACTGACATTGGAGCCGTCGACGAGGAAGACAGTAGGGTGATTAGTGTTTTCGGTTGTTCTCCCTCTGAGCACATTCAGCAAGCCATGGACGATTTCGATATGCTCAGTGCCCCTCAAGGAAGCGCAGGGAACGGTGTCGGGGCAGACGAGGACCCGGCGGCGGCATTTCTGGCCCAGCAAGAGAGCGAGATCGCTGGCATCGAGAATGACGAGGGCTTCAGCATCCTGGACAGCGGAGATGTGCCTTCGTCCCTGAGCCAAGACCAGGACGGTGGAGCAATGAATGGAGATCTGCATGGGGAGAGTAATGGCCCTTCAGATGTGTACGCGGCCATCTCCAGTGTGGATCGGTTGCAGGCTGAGCCGGAGAGCTTGAGGAAGTGGAGAGAGGAGCAGCGAGATAGGCTGGAGGAGCTCGATGCGAACTCGCGTAAACAGGAGGCCGAGTGGAAAGAGAAGGCAAAGCTGGAGCTGGAGGAATGGCACACCAGGCAGAACGAGCAGCTGGAGAAAACCAAAGTCAACAACAGGGTGCTGGATGAGGATTTCTACAAACAACCCTTCGCTGATCTGATTGGTTATGTGGCGGCTGAGGAAGCCATGGTGTCGGAGCTGGATGAAAACAGTCCTGGCACAGAATGGGAACGTGTGGCGCGTCTTTGCGATTTCAACCCTAAATCCAGCAAGCAGGCAAAGGATGTGTCCCGCATGCGTTCAGTGCTCATCTCTCTTAAACAGGCTCCGCTCGTCCGCTAAACAGCTTCAAAGTAAACGAAAATCCAACAATCCCAGCAACCATTGGGTTTCACAACATCGATTTCCTTTGTGGCCCTATCCCAATGGCTTTGAGCTCCATATATGAAtaatctatattatattatatgtatgtgTAATATGATATAGTTATGTCTATAAATATTTCatctataaatatatacatgcatacataaatatatataacaatgtttttatttttggtgtctaTTTT
>TCONS_00000296
CCCCACTGACATTGGAGCCGTCGACGAGGAAGACAGTAGGGTGATTAGTGTTTTCGGTTGTTCTCCCTCTGAGCACATTCAGCAAGCCATGGACGATTTCGATATGCTCAGTGCCCCTCAAGGAAGCGCAGGGAACGGTGTCGGGGCAGACGAGGACCCGGCGGCGGCATTTCTGGCCCAGCAAGAGAGCGAGATCGCTGGCATCGAGAATGACGAGGGCTTCAGCATCCTGGACAGCGGAGATGTGCCTTCGTCCCTGAGCCAAGACCAGGACGGTGGAGCAATGAATGGAGATCTGCATGGGGAGAGTAATGGCCCTTCAGATGTGTACGCGGCCATCTCCAGTGTGGATCGGTTGCAGGCTGAGCCGGAGAGCTTGAGGAAGTGGAGAGAGGAGCAGCGAGATAGGCTGGAGGAGCTCGATGCGAACTCGCGTAAACAGGAGGCCGAGTGGAAAGAGAAGGCAAAGCTGGAGCTGGAGGAATGGCACACCAGGCAGAACGAGCAGCTGGAGAAAACCAAAGTCAACAACAGGGTGCTGGATGAGGATTTCTACAAACAACCCTTCGCTGATCTGATTGGTTATGTCACTCACATTAACCATCCTTGCTACCGCCTAGACCaGGCGGCTGAGGAAGCCATGGTGTCGGAGCTGGATGAAAACAGTCCTGGCACAGAATGGGAACGTGTGGCGCGTCTTTGCGATTTCAACCCTAAATCCAGCAAGCAGGCAAAGGATGTGTCCCGCATGCGTTCAGTGCTCATCTCTCTTAAACAGGCTCCGCTCGTCCGCTAAACAGCTTCAAAGTAAACGAAAATCCAACAATCCCAGCAACCATTGGGTTTCACAACATCGATTTCCTTTGTGGCCCTATCCCAATGGCTTTGAGCTCCATATATGAAtaatctatattatattatatgtatgtgTAATATGATATAGTTATGTCTATAAATATTTCatctataaatatatacatgcatacataaatatatataacaatgtttttatttttggtgtctaTTTTATGGACCAAACTCCATGTTCCACCTATTTTTCCCCTCGCCGTGTAGAGCCAGCGTGTGGCATTGTGACACTATCGATCTATGCATTTCCCTCGTGAATCTGTTGGGGAATCCAGTACTGACGTCTTGTGTATGTTGTATACAgatggtgtgcgtgtgtgtgactgtACATAAAGACTGGTCTTCTACACTTCATTGTGAGATTATGGcacaagttgttgttgttgttgttaaacagAGCTGTACCCCGGTAAACGTTAACTCATGTTGTCCATTCTGTTTCAGTTTGATTAAACACATTTGAAATGGTAA
>TCONS_00000297
CTGACATTGGAGCCGTCGACGAGGAAGACAGTAGGGTGATTAGTGTTTTCGGTTGTTCTCCCTCTGAGCACATTCAGCAAGCCATGGACGATTTCGATATGCTCAGTGCCCCTCAAGGAAGCGCAGGGAACGGTGTCGGGGCAGACGAGGACCCGGCGGCGGCATTTCTGGCCCAGCAAGAGAGCGAGATCGCTGGCATCGAGAATGACGAGGGCTTCAGCATCCTGGACAGCGGAGATGTGCCTTCGTCCCTGAGCCAAGACCAGGACGGTGGAGCAATGAATGGAGATCTGCATGGGGAGAGTAATGGCCCTTCAGATGTGTACGCGGCCATCTCCAGTGTGGATCGGTTGCAGGCTGAGCCGGAGAGCTTGAGGAAGTGGAGAGAGGAGCAGCGAGATAGGCTGGAGGAGCTCGATGCGAACTCGCGTAAACAGGAGGCCGAGTGGAAAGAGAAGGCAAAGCTGGAGCTGGAGGAATGGCACACCAGGCAGAACGAGCAGCTGGAGAAAACCAAAGTCAACAACAGGTACAAAACACTGTTCGAGCAGAAGAAATCAACAAGGCAGGCCTAGTTTCTGGCTTTTGCTGTGCGATTACAAGAGCACAagacctgcacagtttagtttcaaccctgcttcaatACACTTACCCAGAGGTGTAAAACAAGCCTCAAGGACTCCATTAGTTTGATTAAGTGTGCTTAATAAGGGTCAAAGCTAAACTATGTAGAGCTAAGGACCTCCacaaactgagtttgacacctgtgcactagACAGTGCATGGCTCCCTTTATTACTCcatttgtatattaaaaaaaagttttacacagcattaaaa
>TCONS_00000298
GTAGGGTGATTAGTGTTTTCGGTTGTTCTCCCTCTGAGCACATTCAGCAAGCCATGGACGATTTCGATATGCTCAGTGCCCCTCAAGGAAGCGCAGGGAACGGTGTCGGGGCAGACGAGGACCCGGCGGCGGCATTTCTGGCCCAGCAAGAGAGCGAGATCGCTGGCATCGAGAATGACGAGGGCTTCAGCATCCTGGACAGCGGAGATGTGCCTTCGTCCCTGAGCCAAGACCAGGACGGTGGAGCAATGAATGGAGATCTGCATGGGGAGAGTAATGGCCCTTCAGATGTGTACGCGGCCATCTCCAGTGTGGATCGGTTGCAGGCTGAGCCGGAGAGCTTGAGGAAGTGGAGAGAGGAGCAGCGAGATAGGCTGGAGGAGCTCGATGCGAACTCGCGTAAACAGGAGGCCGAGTGGAAAGAGAAGGCAAAGCTGGAGCTGGAGGAATGGCACACCAGGCAGAACGAGCAGCTGGAGAAAACCAAAGTCAACAACAGGGTGCTGGATGAGGATTTCTACAAACAACCCTTCGCTGATCTGATTGGTTATGTGTATGTTGCTAAAACTAACATCCTTTCTTTTCACATGCATCTCTCATTCCCTCGTTTCCCCGCATCCCATCTTTTTTTCCATCACCTGTTAATCTCACACATCTCTAACTAAACTCTTCGTTCACTTCATGTTTGAAGCCAGATAGTTTTTGTTCAACTAATCAGACCAATATTGTTGCACACTATGCATGTtgttcatttgtatatttttgttttagtttcatagatttttttatttgtcttgtccaacattttttttttttaaatcaagatcttttttttttccatggtcATTCATAAAACGTTTAACTCattatttttctgtcattt
>TCONS_00000299
CGCAGGGAACGGTGTCGGGGCAGACGAGGACCCGGCGGCGGCATTTCTGGCCCAGCAAGAGAGCGAGATCGCTGGCATCGAGAATGACGAGGGCTTCAGCATCCTGGACAGCGGAGATGTGCCTTCGTCCCTGAGCCAAGACCAGGACGGTGGAGCAATGAATGGAGATCTGCATGGGGAGAGTAATGGCCCTTCAGATGTGTACGCGGCCATCTCCAGTGTGGATCGGTTGCAGGCTGAGCCGGAGAGCTTGAGGAAGTGGAGAGAGGAGCAGCGAGATAGGCTGGAGGAGCTCGATGCGAACTCGCGTAAACAGGAGGCCGAGTGGAAAGAGAAGGCAAAGCTGGAGCTGGAGGAATGGCACACCAGGCAGAACGAGCAGCTGGAGAAAACCAAAGTCAACAACAGGATAGGTCAAGCTAATGTTCCAGCACAAAAGCACACCTTCAAGTACTCCAAGTACAATTGTAGCCATTTTATGATCCGAAAAGCACACTGAAGAAGCAGATCTGAGAGTCTGACCTTGTTCAATGGTCATGTGAGGTCACAAAATCATAGCTGGTCCAATCAGGAGCAGGTATTGTATCCATCATCGCTTTAGGATGTTGTGTTAGAATGGGGGGAAAAAGTGATGAGAAACTCTTGATCAGTTGGTGAAGCATCTGAGAACTATATTACAAGAACAGGTATTAAGTCAGAAATCAAATGTAACTTCAGTCACATGCTTTGTGCTTCCCATTCAGTCCCAGTGgaaaattcacaaatgttttggTACAAATGAAAATGCCACGTCTTCTTAAATCTCT

Function

symbol description
clta Predicted to enable clathrin heavy chain binding activity. Predicted to be involved in clathrin coat assembly and clathrin-dependent endocytosis. Predicted to act upstream of or within intracellular protein transport and vesicle-mediated transport. Predicted to be located in clathrin-coated pit and cytoplasmic vesicle. Predicted to be part of clathrin vesicle coat. Predicted to be active in plasma membrane; postsynaptic endocytic zone cytoplasmic component; and synaptic vesicle membrane. Orthologous to human CLTA (clathrin light chain A).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0048268 clathrin coat assembly biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0072583 clathrin-dependent endocytosis biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0030125 clathrin vesicle coat cellular_component
GO:0030130 clathrin coat of trans-Golgi network vesicle cellular_component
GO:0030132 clathrin coat of coated pit cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005905 clathrin-coated pit cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0099631 postsynaptic endocytic zone cytoplasmic component cellular_component
GO:0032050 clathrin heavy chain binding molecular_function
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
ko04144 Endocytosis
ko04142 Lysosome
ko04961 Endocrine and other factor-regulated calcium reabsorption
ko04721 Synaptic vesicle cycle
ko05100 Bacterial invasion of epithelial cells
ko05016 Huntington disease
ko04131 Membrane trafficking
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-040426-1986 Predicted to enable clathrin heavy chain binding activity. Predicted to be involved in clathrin coat assembly and clathrin-dependent endocytosis. Predicted to act upstream of or within intracellular protein transport and vesicle-mediated transport. Predicted to be located in clathrin-coated pit and cytoplasmic vesicle. Predicted to be part of clathrin vesicle coat. Predicted to be active in plasma membrane; postsynaptic endocytic zone cytoplasmic component; and synaptic vesicle membrane. Orthologous to human CLTA (clathrin light chain A).

Ensembl:

ensembl_id ENSDARG00000045618

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000294 False 754 mRNA 0.56 5 12348213 12361417
TCONS_00000295 False 992 mRNA 0.49 6 12348232 12361620
TCONS_00000296 False 1338 mRNA 0.48 7 12348232 12361930
TCONS_00000297 False 840 lncRNA 0.51 4 12348237 12355565
TCONS_00000298 False 883 lncRNA 0.47 5 12348267 12357666
TCONS_00000299 True 806 processed_transcript 0.50 5 12348358 12357076

Neighbor

gene id symbol gene type direction distance location
XLOC_000163 nansa coding upstream 3421 12335816 ~ 12344792 (+)
XLOC_000162 gne coding upstream 13673 12295142 ~ 12334540 (+)
XLOC_000161 tmod1 coding upstream 90234 12231478 ~ 12257979 (+)
XLOC_000160 tdrd7a coding upstream 120097 12195700 ~ 12228116 (+)
XLOC_000159 stra6l coding upstream 154974 12172322 ~ 12193239 (+)
XLOC_000165 C1H4orf33 coding downstream 32275 12394205 ~ 12400783 (+)
XLOC_000166 CT033816.1 coding downstream 69398 12431328 ~ 12431442 (+)
XLOC_000167 BX511261.1 coding downstream 181429 12543359 ~ 12543475 (+)
XLOC_000168 NA coding downstream 311055 12672985 ~ 12677022 (+)
XLOC_000169 CU550697.1 coding downstream 373990 12735920 ~ 12736034 (+)
XLOC_000155 NA non-coding upstream 299704 12046492 ~ 12048509 (+)
XLOC_000152 NA non-coding upstream 414537 11933317 ~ 11933676 (+)
XLOC_000146 CU929311.1 non-coding upstream 878563 11469536 ~ 11469650 (+)
XLOC_000145 CU929103.1 non-coding upstream 967602 11380497 ~ 11380611 (+)
XLOC_000143 NA non-coding upstream 1560896 10780928 ~ 10787317 (+)
XLOC_000171 BX323031.2 non-coding downstream 486131 12848061 ~ 12853263 (+)

Expression


Co-expression Network