XLOC_016478 (emilin2a)


Basic Information

Item Value
gene id XLOC_016478
gene name emilin2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 30986996 ~ 31018096 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032422
TGTCACAGCAGAACTCGGTGATGGACCCATTTTCTTTCTCTGCTGGTCTCACACGTCAGACTTTCTCTGGGGACTTCGGCATCATTGCCTTTGACAGAGTGCTGGTCAACGATGGAGGACACTATAACCCTCAGACAGGGATCTTTACGGTGCCCACTGACGGCCGTTATCTGGTGACGGCTGTTTTATCCGCCCAGCGGGGTGAGCATGCAGAAGCTGTGCTCTCAGTATCCAATCGCAGCGTGCAGAAGTTGGACACGGCGGGTTACTCGAGTGGACACCTGCGACTGACCCAAGATCAGTGTGCATGTGGAGGGTCAGCGTCTTTCAGCCTCATCCTCCCGCTCCACAGAGGTGACACCATGGCCTTGGTCCGCACTGCTGGTAAGCTGGCGGTCTCCGAATCAAGAGAGATCCTCTCCACCTTCAGCGCTATATTCCTCTACTCGCCTCAAGCGAAGAGATAA
>TCONS_00032423
aATGAATTACCATACACGATTGTTTGGAGCAAAGTTATTAGTTTTATTCATCATAAGCTTTTCTCTCACTCATGGATACCCGTCAAGTCTGTTCCAGGGCAACGCGTATTCAGGAGCCGTTCACAGGCACCGAAATAAAAACTGGTGCGCTTTTATCGTCCAAAAGAATGTGAGCTGCGCGGTTCAAGGCAGCGTGGAGAGTCACGTTGAACCTGAAGCCGCGCGCTGTCCTGAGCACCAGCCTGACTGTGAGCCACAAATGATataccGTACTCGATTTCGTCCAACTTATAAGATAGCATACAAGACCGTGACTGAATTAGAATGGCGGTGCTGTCCAGGATATCAAGGTCCAGACTGCAGGGAAGTTAAAGGCTTTCCAAATGGACAAATAGCGAATCCACAATCATACCCACAATATCCACAGCATGGACAAACTCGAACTGCACAAAGACCAGAGCGGCGGGAAACTGTACAATATGACTTGAGAAGAGGAGCTGACAGAACACGAATGTTGGAAGAAGAAGTGCAACGTCTCAGCCAGACAGTTCTGGATCTTCAAGCTGCCATGACAGGTATGGCAGAGAACCTGCGGACAGACATACAAGAGGACACCAGCAAGATGCTCATTACCCTCCTCAATGACAGGACTTCACCTGACAGCGCAAGAACTGGAGGCACAGAAGAGAGTGTGGTGCTTCTTGACGGCCACCAGGCTATGAGAGGCCAAACTCATGGAGAAAGAGAAATGGAAACGGTGATGGCAAGACTCAATGACGTCACAGATGCTCTCAAAACCAAAGACGAAGCTCTTGAGGAATTGCGGGGAACAGTGACGGGACATGACAATCAAATCCGAATGCTTATGGATAGTGCTTCTCAAAGCCTACCAGTTGCGGGTGATTCTTCTCAAGATGTAGACGTCCTTCAGGCTTACGTTGATGAGAAATTTGAGAAGCTCAAGAAGGATTTTGTTGTAAACTTGGAAGACGAGATGACCAAACTGAAAACGGCATGTGATGAAAAGATTCAGTCTCTTCAAAAAACATGTGAAGAAGGACAGGAGAACGGCTACGGGAGCCTCACCAATCTAGTGAACAACAAGGAAGCTGAGCTTAGAAAGGAGATTCGTGAGCTCCGATTGGATTTGTCCATGTCTGATGGTCTCATGCCCACAAACCGCCAAACGACCATTGGAAAAACTGATGGTGACTACAGTGACTTGAGGAGGGAAATAGCTCGAGTGGCAGAGGCTCATCGGGTCCTCAATGCCAGAATGGACAATGAGCTTGAGCATCTGTCCTCACTGAAGATGGAAGATATAATCGGTTCACGCCTGGAGGACCTGGAGGACAGGATGAACGTCACTGAGAGGAACGCAGAGACTTATTGTTTCTATGTGGAGGAAAAACTTACCAAGGACATAATGAATGAAGTAGCTATGTTACATCAACTTCTTGATCAGAAACTGGATGGTATTCAGGATCAGTTCACTTCCATGTTGATTGAAATGAACAACAATTCCTTTCCTCTGATTTCAAGTGATTCTGTTGATGCACTTCAAACTCAGGTTACTGCAAACAAGTTCCTTATACAGGGGTTAGAGGACAAGTTTAGTACACTTGGGCAAAATTGTTCTACcaactgcaaaagcaaccaaccCTCTGATTCCAAAAAGCCTGAAGGTCTAGAAAGTGTTGTGAAGGATGTGACACTCTGCAGAAATGATCTGGATGTTTTGCGTTCTGATTTTGTAAACAGCATAGCAAAGATCCACGCATTAGAGGATACTATTAGGATGTCACCTGAAAAACAATTCATCAATGCCCATATGCAGGATACCGGCAAAAGACTTCATGCTTTGAGTGACAATGTAATTGGCTTGTCTGGGGCAATAACAGGATTGGGAGACACGGTTAGCAAATTTAGCCAAGACCTTCACACTTTGAATTCCACTTGTTGCCAAACAGGGCAGGTTGACAATCCATCTCTTCAGGCAGAAACTGGCAGACCAAGCCACAACCAGATTGCGGAGCTAAAAGACAAACTGGATGCACTGAATGTCCGAGTGACCACAGAGTTGAGTATGTGTAAAGTCAACACAACTGGAGTAGCTGAGGGTGTCTCTGCAGTGGATGACAGGGTGAAGGCTCTGGAGAAGATCTGCAGACGGCTTGACGGTGGAGCGAGCAATATCCAAGACCTTTCGGGGGAATTGGAGAGGAAGGTGGCACAAATGAATAACACCCTGGGAAGTCATTCAGGAGAGATCTTAACTCTTCAGAACTCCCTTCTGAATTTTCACAGCCAGCTAGCAGGACTGGCTAAACAGATTCATAAGGACCATACGAGTAAAGAACAAGGACTGCCTGTTCGGCAAGAGAAACCAGTGTCTGTCCCTGACACTAGAGCTCCAACAAAACCCATGAGACCATATGCTCCTCATATCAACATACCATTGATCATACCCCACAGGACAGTGCCAGCACCCACCGGCCATCCCCATGTGCGCCAGCAGCCGCACGTCCCACACCGACCCTACTACCCTCAGCCACCCAGTAACCCAAGACGTCCCATCTACCACATACAACCCCAGCAACCAGTCATCCACGAGCCTGTGGTGGTCACCGGACAGGCTGGTCCACCTGGGTATGTGCGCAGGGTCACGGTCAGACGGGATCAGAGCTCAGAGGACACCAAAACACCTGTTACAGGATTTGCAGGAGCTCCAGGTTATCCTCCTGTCAACCCTGTCTCATATGATACCAAACAGCCTCCTCCAGCAGCTGTCAATGTCCCATGGAGTCCTGCGCATCAAAGACCCATTGCTGCTCCAGTGTCACAGCAGAACTCGGTGATGGACCCATTTTCTTTCTCTGCTGGTCTCACACGTCAGACTTTCTCTGGGGACTTCGGCATCATTGCCTTTGACAGAGTGCTGGTCAACGATGGAGGACACTATAACCCTCAGACAGGGATCTTTACGGTGCCCACTGACGGCCGTTATCTGGTGACGGCTGTTTTATCCGCCCAGCGGGGTGAGCATGCAGAAGCTGTGCTCTCAGTATCCAATCGCAGCGTGCAGAAGTTGGACACGGCGGGTTACTCGAGTGGACACCTGCGACTGACCCAAGATCAGTGTGCATGTGGAGGGTCAGCGTCTTTCAGCCTCATCCTCCCGCTCCACAGAGGTGACACCATGGCCTTGGTCCGCACTGCTGGTAAGCTGGCGGTCTCCGAATCAAGAGAGATCCTCTCCACCTTCAGCGCTATATTCCTCTACTCGCCTCAAGCGAAGAGATAA
>TCONS_00032424
TTATTAGTTTTATTCATCATAAGCTTTTCTCTCACTCATGGATACCCGTCAAGTCTGTTCCAGGGCAACGCGTATTCAGGAGCCGTTCACAGGCACCGAAATAAAAACTGGTGCGCTTTTATCGTCCAAAAGAATGTGAGCTGCGCGGTTCAAGGCAGCGTGGAGAGTCACGTTGAACCTGAAGCCGCGCGCTGTCCTGAGCACCAGCCTGACTGTGAGCCACAAATGATataccGTACTCGATTTCGTCCAACTTATAAGATAGCATACAAGACCGTGACTGAATTAGAATGGCGGTGCTGTCCAGGATATCAAGGTCCAGACTGCAGGGAAGTTAAAGGCTTTCCAAATGGACAAATAGCGAATCCACAATCATACCCACAATATCCACAGCATGGACAAACTCGAACTGCACAAAGACCAGAGCGGCGGGAAACTGTACAATATGACTTGAGAAGAGGAGCTGACAGAACACGAATGTTGGAAGAAGAAGTGCAACGTCTCAGCCAGACAGTTCTGGATCTTCAAGCTGCCATGACAGGTATGGCAGAGAACCTGCGGACAGACATACAAGAGGACACCAGCAAGATGCTCATTACCCTCCTCAATGACAGGACTTCACCTGACAGCGCAAGAACTGGAGGCACAGAAGAGAGTGTGGTGCTTCTTGACGGCCACCAGGCTATGAGAGGCCAAACTCATGGAGAAAGAGAAATGGAAACGGTGATGGCAAGACTCAATGACGTCACAGATGCTCTCAAAACCAAAGACGAAGCTCTTGAGGAATTGCGGGGAACAGTGACGGGACATGACAATCAAATCCGAATGCTTATGGATAGTGCTTCTCAAAGCCTACCAGTTGCGGGTGATTCTTCTCAAGATGTAGACGTCCTTCAGGCTTACGTTGATGAGAAATTTGAGAAGCTCAAGAAGGATTTTGTTGTAAACTTGGAAGACGAGATGACCAAACTGAAAACGGCATGTGATGAAAAGATTCAGTCTCTTCAAAAAACATGTGAAGAAGGACAGGAGAACGGCTACGGGAGCCTCACCAATCTAGTGAACAACAAGGAAGCTGAGCTTAGAAAGGAGATTCGTGAGCTCCGATTGGATTTGTCCATGTCTGATGGTCTCATGCCCACAAACCGCCAAACGACCATTGGAAAAACTGATGGTGACTACAGTGACTTGAGGAGGGAAATAGCTCGAGTGGCAGAGGCTCATCGGGTCCTCAATGCCAGAATGGACAATGAGCTTGAGCATCTGTCCTCACTGAAGATGGAAGATATAATCGGTTCACGCCTGGAGGACCTGGAGGACAGGATGAACGTCACTGAGAGGAACGCAGAGACTTATTGTTTCTATGTGGAGGAAAAACTTACCAAGGACATAATGAATGAAGTAGCTATGTTACATCAACTTCTTGATCAGAAACTGGATGGTATTCAGGATCAGTTCACTTCCATGTTGATTGAAATGAACAACAATTCCTTTCCTCTGATTTCAAGTGATTCTGTTGATGCACTTCAAACTCAGGTTACTGCAAACAAGTTCCTTATACAGGGGTTAGAGGACAAGTTTAGTACACTTGGGCAAAATTGTTCTACcaactgcaaaagcaaccaaccCTCTGATTCCAAAAAGCCTGAAGGTCTAGAAAGTGTTGTGAAGGATGTGACACTCTGCAGAAATGATCTGGATGTTTTGCGTTCTGATTTTGTAAACAGCATAGCAAAGATCCACGCATTAGAGGATACTATTAGGATGTCACCTGAAAAACAATTCATCAATGCCCATATGCAGGATACCGGCAAAAGACTTCATGCTTTGAGTGACAATGTAATTGGCTTGTCTGGGGCAATAACAGGATTGGGAGACACGGTTAGCAAATTTAGCCAAGACCTTCACACTTTGAATTCCACTTGTTGCCAAACAGGGCAGGTTGACAATCCATCTCTTCAGGCAGAAACTGGCAGACCAAGCCACAACCAGATTGCGGAGCTAAAAGACAAACTGGATGCACTGAATGTCCGAGTGACCACAGAGTTGAGTATGTGTAAAGTCAACACAACTGGAGTAGCTGAGGGTGTCTCTGCAGTGGATGACAGGGTGAAGGCTCTGGAGAAGATCTGCAGACGGCTTGACGGTGGAGCGAGCAATATCCAAGACCTTTCGGGGGAATTGGAGAGGAAGGTGGCACAAATGAATAACACCCTGGGAAGTCATTCAGGAGAGATCTTAACTCTTCAGAACTCCCTTCTGAATTTTCACAGCCAGCTAGCAGGACTGGCTAAACAGATTCATAAGGACCATACGAGTAAAGAACAAG

Function

symbol description
emilin2a Is expressed in several structures, including angioblastic mesenchymal cell; cardiovascular system; fin fold pectoral fin bud; lateral plate mesoderm; and macrophage. Orthologous to human EMILIN2 (elastin microfibril interfacer 2).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-247 Is expressed in several structures, including angioblastic mesenchymal cell; cardiovascular system; fin fold pectoral fin bud; lateral plate mesoderm; and macrophage. Orthologous to human EMILIN2 (elastin microfibril interfacer 2).

Ensembl:

ensembl_id ENSDARG00000061196

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032422 False 467 mRNA 0.55 2 30986996 30987538
TCONS_00032423 False 3304 mRNA 0.49 9 30986996 31018096
TCONS_00032424 True 2329 mRNA 0.46 4 31011483 31018062

Neighbor

gene id symbol gene type direction distance location
XLOC_016477 myl12.2 coding downstream 74074 30910134 ~ 30912922 (-)
XLOC_016476 rgs20 coding downstream 202494 30752501 ~ 30784502 (-)
XLOC_016475 AL929271.1 coding downstream 234887 30751977 ~ 30752109 (-)
XLOC_016474 rp1 coding downstream 252898 30732886 ~ 30734098 (-)
XLOC_016473 GPR141 coding downstream 265494 30713868 ~ 30721502 (-)
XLOC_016479 NA coding upstream 42097 31060193 ~ 31075713 (-)
XLOC_016480 NA coding upstream 59758 31077854 ~ 31108947 (-)
XLOC_016481 adcyap1b coding upstream 278548 31296644 ~ 31302619 (-)
XLOC_016482 clul1 coding upstream 345190 31363286 ~ 31376607 (-)
XLOC_016483 mrc1b coding upstream 497757 31515853 ~ 31540922 (-)
XLOC_016470 NA non-coding downstream 640722 30329539 ~ 30346274 (-)
XLOC_016466 NA non-coding downstream 802359 30183095 ~ 30184637 (-)
XLOC_016465 CT027743.1 non-coding downstream 805777 30181130 ~ 30181219 (-)
XLOC_016460 NA non-coding downstream 1022283 29959590 ~ 29964713 (-)
XLOC_016502 BX323064.1 non-coding upstream 856302 31874398 ~ 31874836 (-)
XLOC_016505 NA non-coding upstream 864311 31882407 ~ 31883178 (-)
XLOC_016510 NA non-coding upstream 1176729 32194825 ~ 32201587 (-)

Expression


Co-expression Network