RNA id: TCONS_00032424


Basic Information

Item Value
RNA id TCONS_00032424
length 2329
RNA type mRNA
GC content 0.46
exon number 4
gene id XLOC_016478
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 30986996 ~ 31018096 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTATTAGTTTTATTCATCATAAGCTTTTCTCTCACTCATGGATACCCGTCAAGTCTGTTCCAGGGCAACGCGTATTCAGGAGCCGTTCACAGGCACCGAAATAAAAACTGGTGCGCTTTTATCGTCCAAAAGAATGTGAGCTGCGCGGTTCAAGGCAGCGTGGAGAGTCACGTTGAACCTGAAGCCGCGCGCTGTCCTGAGCACCAGCCTGACTGTGAGCCACAAATGATataccGTACTCGATTTCGTCCAACTTATAAGATAGCATACAAGACCGTGACTGAATTAGAATGGCGGTGCTGTCCAGGATATCAAGGTCCAGACTGCAGGGAAGTTAAAGGCTTTCCAAATGGACAAATAGCGAATCCACAATCATACCCACAATATCCACAGCATGGACAAACTCGAACTGCACAAAGACCAGAGCGGCGGGAAACTGTACAATATGACTTGAGAAGAGGAGCTGACAGAACACGAATGTTGGAAGAAGAAGTGCAACGTCTCAGCCAGACAGTTCTGGATCTTCAAGCTGCCATGACAGGTATGGCAGAGAACCTGCGGACAGACATACAAGAGGACACCAGCAAGATGCTCATTACCCTCCTCAATGACAGGACTTCACCTGACAGCGCAAGAACTGGAGGCACAGAAGAGAGTGTGGTGCTTCTTGACGGCCACCAGGCTATGAGAGGCCAAACTCATGGAGAAAGAGAAATGGAAACGGTGATGGCAAGACTCAATGACGTCACAGATGCTCTCAAAACCAAAGACGAAGCTCTTGAGGAATTGCGGGGAACAGTGACGGGACATGACAATCAAATCCGAATGCTTATGGATAGTGCTTCTCAAAGCCTACCAGTTGCGGGTGATTCTTCTCAAGATGTAGACGTCCTTCAGGCTTACGTTGATGAGAAATTTGAGAAGCTCAAGAAGGATTTTGTTGTAAACTTGGAAGACGAGATGACCAAACTGAAAACGGCATGTGATGAAAAGATTCAGTCTCTTCAAAAAACATGTGAAGAAGGACAGGAGAACGGCTACGGGAGCCTCACCAATCTAGTGAACAACAAGGAAGCTGAGCTTAGAAAGGAGATTCGTGAGCTCCGATTGGATTTGTCCATGTCTGATGGTCTCATGCCCACAAACCGCCAAACGACCATTGGAAAAACTGATGGTGACTACAGTGACTTGAGGAGGGAAATAGCTCGAGTGGCAGAGGCTCATCGGGTCCTCAATGCCAGAATGGACAATGAGCTTGAGCATCTGTCCTCACTGAAGATGGAAGATATAATCGGTTCACGCCTGGAGGACCTGGAGGACAGGATGAACGTCACTGAGAGGAACGCAGAGACTTATTGTTTCTATGTGGAGGAAAAACTTACCAAGGACATAATGAATGAAGTAGCTATGTTACATCAACTTCTTGATCAGAAACTGGATGGTATTCAGGATCAGTTCACTTCCATGTTGATTGAAATGAACAACAATTCCTTTCCTCTGATTTCAAGTGATTCTGTTGATGCACTTCAAACTCAGGTTACTGCAAACAAGTTCCTTATACAGGGGTTAGAGGACAAGTTTAGTACACTTGGGCAAAATTGTTCTACcaactgcaaaagcaaccaaccCTCTGATTCCAAAAAGCCTGAAGGTCTAGAAAGTGTTGTGAAGGATGTGACACTCTGCAGAAATGATCTGGATGTTTTGCGTTCTGATTTTGTAAACAGCATAGCAAAGATCCACGCATTAGAGGATACTATTAGGATGTCACCTGAAAAACAATTCATCAATGCCCATATGCAGGATACCGGCAAAAGACTTCATGCTTTGAGTGACAATGTAATTGGCTTGTCTGGGGCAATAACAGGATTGGGAGACACGGTTAGCAAATTTAGCCAAGACCTTCACACTTTGAATTCCACTTGTTGCCAAACAGGGCAGGTTGACAATCCATCTCTTCAGGCAGAAACTGGCAGACCAAGCCACAACCAGATTGCGGAGCTAAAAGACAAACTGGATGCACTGAATGTCCGAGTGACCACAGAGTTGAGTATGTGTAAAGTCAACACAACTGGAGTAGCTGAGGGTGTCTCTGCAGTGGATGACAGGGTGAAGGCTCTGGAGAAGATCTGCAGACGGCTTGACGGTGGAGCGAGCAATATCCAAGACCTTTCGGGGGAATTGGAGAGGAAGGTGGCACAAATGAATAACACCCTGGGAAGTCATTCAGGAGAGATCTTAACTCTTCAGAACTCCCTTCTGAATTTTCACAGCCAGCTAGCAGGACTGGCTAAACAGATTCATAAGGACCATACGAGTAAAGAACAAG

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-247 Is expressed in several structures, including angioblastic mesenchymal cell; cardiovascular system; fin fold pectoral fin bud; lateral plate mesoderm; and macrophage. Orthologous to human EMILIN2 (elastin microfibril interfacer 2).

Ensembl:

ensembl_id ENSDART00000140841

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033863 lncRNA downstream 665209 30329539 ~ 30346274 (-) True XLOC_016470
TCONS_00033862 lncRNA downstream 665216 30329539 ~ 30346267 (-) False XLOC_016470
TCONS_00032407 lncRNA downstream 716566 30292294 ~ 30294917 (-) True XLOC_016469
TCONS_00032404 lncRNA downstream 761737 30248856 ~ 30249746 (-) True XLOC_016468
TCONS_00033861 lncRNA downstream 826846 30183095 ~ 30184637 (-) True XLOC_016466
TCONS_00033374 lncRNA upstream 42131 31060193 ~ 31074986 (-) False XLOC_016479
TCONS_00033864 lncRNA upstream 56346 31074408 ~ 31075713 (-) True XLOC_016479
TCONS_00033375 lncRNA upstream 59792 31077854 ~ 31080324 (-) False XLOC_016480
TCONS_00033376 lncRNA upstream 59792 31077854 ~ 31098639 (-) False XLOC_016480
TCONS_00033865 lncRNA upstream 74687 31092749 ~ 31097703 (-) False XLOC_016480
TCONS_00032422 mRNA downstream 23945 30986996 ~ 30987538 (-) False XLOC_016478
TCONS_00032421 mRNA downstream 98561 30910144 ~ 30912922 (-) True XLOC_016477
TCONS_00032420 mRNA downstream 99176 30910134 ~ 30912307 (-) False XLOC_016477
TCONS_00032417 mRNA downstream 226981 30756629 ~ 30784502 (-) False XLOC_016476
TCONS_00032426 mRNA upstream 278582 31296644 ~ 31301929 (-) False XLOC_016481
TCONS_00032425 mRNA upstream 278582 31296644 ~ 31301929 (-) False XLOC_016481
TCONS_00032427 mRNA upstream 279088 31297150 ~ 31302615 (-) False XLOC_016481
TCONS_00032429 mRNA upstream 281325 31299387 ~ 31302619 (-) True XLOC_016481
TCONS_00032430 mRNA upstream 345224 31363286 ~ 31376606 (-) False XLOC_016482
TCONS_00032415 other downstream 259374 30751977 ~ 30752109 (-) True XLOC_016475
TCONS_00032402 other downstream 761735 30245934 ~ 30249748 (-) False XLOC_016468
TCONS_00032397 other downstream 830264 30181130 ~ 30181219 (-) True XLOC_016465
TCONS_00032392 other downstream 1022786 29986258 ~ 29988697 (-) True XLOC_016461
TCONS_00032385 other downstream 1244193 29764395 ~ 29767290 (-) True XLOC_016457
TCONS_00032428 other upstream 281208 31299270 ~ 31301354 (-) False XLOC_016481
TCONS_00032436 other upstream 592972 31611034 ~ 31612177 (-) False XLOC_016485
TCONS_00032438 other upstream 592992 31611054 ~ 31612167 (-) False XLOC_016485
TCONS_00032441 other upstream 593972 31612034 ~ 31614289 (-) False XLOC_016485
TCONS_00032442 other upstream 593974 31612036 ~ 31614391 (-) False XLOC_016485

Expression Profile

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