XLOC_016469 (jph1b)


Basic Information

Item Value
gene id XLOC_016469
gene name jph1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 30290719 ~ 30324610 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032405
GAAGCGAACAGGGGGGAGAGGATCATAAAAAAACCCCGGAACGGCGACAGTGACAGCGCCTGCGGCTCCGGCGCCTGTGCGCGATCCTGCCTCTCACTCACCGCCAACACTCGCACCGATGCGCGCGCTCCGCCAGCACCTCCAACAGACAGCACCGCACCGTACCGCAGTCTGACATTCACCCCATTTACTGCTGTTGTCGTTAAGCATCCGACCGGCCATCGAGACGCAAACTCTTTCAATTCAACCCTTCATCTGAATGACGGGCGGACGGTTCGACTTCGACGATGGCGGCACTTTCTGCGGTGGATGGGAGGACGGAAAAGCCCACGGACACGGCATCTGCACCGGCCCCAAAGGCCAGGGCGAATACTCCGGGTCCTGGTCCAACGGCTTTGAGGTAGTCGGGGTTTACACCTGGCCCAGCGGGAATACATACAAGGGCTACTGGGCTCAGGGGAAGCGGCACGGTCTCGGCGTGGAGTCCAAGGGGAGGTGGCTGTACCGCGGGGAGTGGAGCCACGGATTTAAGGGTCGCTACGGGGTTCGCCAGAGCCTCAATACACCTGCCAGGTATGAAGGCACATGGAGTAATGGACTGCAAGACGGATATGGGGTCGAGACGTACGGGGATGGGGGTACATACCAGGGCCAGTGGATGGGCGGAATGCGGCACGGATATGGTGTACGTCAGAGCGTCCCTTACGGCATGGCCACAGTCATCCGCTCTCCACTGCGCACCTCACTGGCCTCTCTCCGCAGCGAGCAAAGCAACGGCTCCGTCCTCCACGACCACATGTCCGACAGCCCTGCTGGCACTCGCGGCGGCTTCGTCCTCAACTTCCACAGCGACAGCGAAGTGGTCTCCGGCaaaaaaaagggcctgttcagACGGGGTTCACTGTTTGGGAGCCTCAAGCAGCTGAGGAAGTCTGACTCCCGGTCCTCCATATCCAGCAAACGCAGTTCTGCAAGAAGTGACGCCACCATGAGCCGAATCAGCTCTAGCGACGCAAACTCCACTATTAGTTTCGGAGATGGAGAAGTGGCTGATGAATACATGCCGGCAGAGGATAATGTGGATGCCACCACCACAGAGTCATACTTGGGCGAGTGGAAAAACGACAAGCGGAACGGTTTCGGTGTCAGCGAACGCTCCAATGGGATGAAATATGAAGGAGAGTGGATAAACAACAAACGCCATGGCTACGGGTGCACAATGTTCCCTGATGGGACGAAAGAAGAGGGGAAGTATAAAAATAATGTGTTGGTGCGAGGCATAAAGAAGCAGCTTATTCCCCTCAAGAACACCAAGACGAAGCAGAAAGTGGACCGTGCCGTCGAAGGAGCCATTAGAGCATCAGCCATTGCCCGAACAAAAGTAGAAATTGCCACCTCAAGAACGGCACACGCCAGGGCCAAAGCAGAGGCAGCTGACCAGGCCTCGCTTTCTGCCAGCCAGGAGTCTGATCTGGCCAGAGCCGTAGCCCGAGATCTGTCCCCCAACTTCCACCAACCAGgCCCCGATTATATCAAGCAGAGATTTTCCAGCGAGCCCATTGAGATTAAAGAAGTACCtgaagaaaagaaagagaaatcgCCTTCAGGAAGTCCGCACTTTTACCGCAAAGGCACGACCCCAACCCAGTCTCCTTCCCAAAGCCCTGGCCCAACACCACCCCCATCTCCCCCCCTCACCAAGAAAAAACCCTTCTTTAACAGAAGTGCCCCGAAAGCCATTAAAGAGAACAAGCCCCCTGCTGCTGAAAACCTGGCAGCGGGTGTCAGCAAGGCTAATACCAGGATATCAGACAAGCAGGAAGTCAACCAAGAGGTCGTACCTGTAGCCAAACCCTCCAAACCATTGGCGCCGGTCGCCAACGCATCCAGCCCTGGGAACGGTGAGCTGCACACCCAGTATCACGGCTATTATGTGAAGGCTGAGGTGATGATGCCGCCCGATGAACTGGAGGATGAAGAacatcatcaccatcaccatcatcacgAAACATCGACTGCTCTTACACGGATGCCCCCACCTGTCAAGCAGTACCGCGCTCCCACCCCCAAACCAGTAATGGCCAAAGAGAGCAAACCCGAACCCAAACTGAAGAAGCAGGAATCGCTGAAGCCAAAGAGCCTAGCAGAAACTAAGAAAGCCAGCATGGAAATTACTACTGACATTGTTGAGGAGGAATCAGGTCCCAACTCAATATTGGTCATACTAGTGATGCTGATAAATATTGGACTGGCAATTATTTTTGTCCATTTCCTCACTTGACGGAACATTAACCTCAGAGGTTTTGTCAGACTGCGAGAGTATGTGAGAGTGAAGGAGGAGGGAAGAGAAGAGCAACAGAATGGATGGTGGCTTGTCTTTTGACAAGAGAGATTAATCTTCAAAAGTAGAACagacttatttttaaagaaagatTATCTTTTTTGTGGCAGGGGAAAGGAAACACCTTTGATTTACACTCATTGGCTATGTACATGGctaattgtgttgttgttgttgtttttttctatttctgtttaTATTCCATCCTGGTACATTTTAGATGTCATTAAAAGTTCCCCATGCAATTTGGCAGATGTTAAACAATATAGATTGTTGTCATTTTGTTTCTAAGCATCTTTTTACCAGACAaatttctgtatttgttttttttttctgaagtaaAAAGTGTTTGACTTAACTCTTTCCTGCTGATATGATTTTTAagatccagcatatattttactgggtttaattgatataaaaaaagaagaatcagtaaaaaaaaaa
>TCONS_00032406
CAGAGACATAGGGAACATCAAAAAATATGTTGAAAGATAGAGGAATTCAGATAGGTTGAGAGCCACTTAATATGCTATATATAAATAGAAAAGttagtacaaaaaatgttgacatTTAATTAGAAAATCCTAATAATGAAAACCTGTCCGTATGGTCCAATCTATTCTGATGAAGAAAAACTCAAACTTACGGCGTTCACCCAACTGTGAATGTGGTCCAGCGCGAGGGCGGGCTTGTAGTACTGACGTCATCAACTGGGTGTCTCTCACCCGGCTTTGGGCTCctgtcttctctctctctctccctccctgtGAAGCGAACAGGGGGGAGAGGATCATAAAAAAACCCCGGAACGGCGACAGTGACAGCGCCTGCGGCTCCGGCGCCTGTGCGCGATCCTGCCTCTCACTCACCGCCAACACTCGCACCGATGCGCGCGCTCCGCCAGCACCTCCAACAGACAGCACCGCACCGTACCGCAGTCTGACATTCACCCCATTTACTGCTGTTGTCGTTAAGCATCCGACCGGCCATCGAGACGCAAACTCTTTCAATTCAACCCTTCATCTGAATGACGGGCGGACGGTTCGACTTCGACGATGGCGGCACTTTCTGCGGTGGATGGGAGGACGGAAAAGCCCACGGACACGGCATCTGCACCGGCCCCAAAGGCCAGGGCGAATACTCCGGGTCCTGGTCCAACGGCTTTGAGGTAGTCGGGGTTTACACCTGGCCCAGCGGGAATACATACAAGGGCTACTGGGCTCAGGGGAAGCGGCACGGTCTCGGCGTGGAGTCCAAGGGGAGGTGGCTGTACCGCGGGGAGTGGAGCCACGGATTTAAGGGTCGCTACGGGGTTCGCCAGAGCCTCAATACACCTGCCAGGTATGAAGGCACATGGAGTAATGGACTGCAAGACGGATATGGGGTCGAGACGTACGGGGATGGGGGTACATACCAGGGCCAGTGGATGGGCGGAATGCGGCACGGATATGGTGTACGTCAGAGCGTCCCTTACGGCATGGCCACAGTCATCCGCTCTCCACTGCGCACCTCACTGGCCTCTCTCCGCAGCGAGCAAAGCAACGGCTCCGTCCTCCACGACCACATGTCCGACAGCCCTGCTGGCACTCGCGGCGGCTTCGTCCTCAACTTCCACAGCGACAGCGAAGTGGTCTCCGGCaaaaaaaagggcctgttcagACGGGGTTCACTGTTTGGGAGCCTCAAGCAGCTGAGGAAGTCTGACTCCCGGTCCTCCATATCCAGCAAACGCAGTTCTGCAAGAAGTGACGCCACCATGAGCCGAATCAGCTCTAGCGACGCAAACTCCACTATTAGTTTCGGAGATGGAGAAGTGGCTGATGAATACATGCCGGCAGAGGATAATGTGGATGCCACCACCACAGAGTCATACTTGGGCGAGTGGAAAAACGACAAGCGGAACGGTTTCGGTGTCAGCGAACGCTCCAATGGGATGAAATATGAAGGAGAGTGGATAAACAACAAACGCCATGGCTACGGGTGCACAATGTTCCCTGATGGGACGAAAGAAGAGGGGAAGTATAAAAATAATGTGTTGGTGCGAGGCATAAAGAAGCAGCTTATTCCCCTCAAGAACACCAAGACGAAGCAGAAAGTGGACCGTGCCGTCGAAGGAGCCATTAGAGCATCAGCCATTGCCCGAACAAAAGTAGAAATTGCCACCTCAAGAACGGCACACGCCAGGGCCAAAGCAGAGGCAGCTGACCAGGCCTCGCTTTCTGCCAGCCAGGAGTCTGATCTGGCCAGAGCCGTAGCCCGAGATCTGTCCCCCAACTTCCACCAACCAGgCCCCGATTATATCAAGCAGAGATTTTCCAGCGAGCCCATTGAGATTAAAGAAGTACCtgaagaaaagaaagagaaatcgCCTTCAGGAAGTCCGCACTTTTACCGCAAAGGCACGACCCCAACCCAGTCTCCTTCCCAAAGCCCTGGCCCAACACCACCCCCATCTCCCCCCCTCACCAAGAAAAAACCCTTCTTTAACAGAAGTGCCCCGAAAGCCATTAAAGAGAACAAGCCCCCTGCTGCTGAAAACCTGGCAGCGGGTGTCAGCAAGGCTAATACCAGGATATCAGACAAGCAGGAAGTCAACCAAGAGGTCGTACCTGTAGCCAAACCCTCCAAACCATTGGCGCCGGTCGCCAACGCATCCAGCCCTGGGAACGGTGAGCTGCACACCCAGTATCACGGCTATTATGTGAAGGCTGAGGTGATGATGCCGCCCGATGAACTGGAGGATGAAGAacatcatcaccatcaccatcatcacgAAACATCGACTGCTCTTACACGGATGCCCCCACCTGTCAAGCAGTACCGCGCTCCCACCCCCAAACCAGTAATGGCCAAAGAGAGCAAACCCGAACCCAAACTGAAGAAGCAGGAATCGCTGAAGCCAAAGAGCCTAGCAGAAACTAAGAAAGCCAGCATGGAAATTACTACTGACATTGTTGAGGAGGAATCAGGTCCCAACTCAATATTGGTCATACTAGTGATGCTGATAAATATTGGACTGGCAATTATTTTTGTCCATTTCCTCACTTGACGGAACATTAACCTCAGTGAGCTCATGAAAACTAGCGGCATAGGCCCCTAATTCTCCGCAGTTGCGTCAATGGCCTTTAAAACAAAATGGCGCCAGTCAGACTCAGACACAGGCAAAGGACTGGACGAATGAAATCATGGGAGAAAGACGAAACCCGGACCATTCGGCCTGAGCCAGCCCAGTTCCTCTGGCGATGATTTGTGACTCGCTTGGGCTCTGAAAGCTGAAGCAAGCAGTCGTTGGGAAAGAAAAAGAATCTGCTGATCCAAGCCGTACCCAGTCAAGTGCATGTCCACCCCGCTGCTCTGCGGGGAGGGGTGGAATGGGGGGACTTAACTGGATATGTTCGGAGATGCACTTTCAGTTGACGGAAGCGAACAGCTGCCTTACTATTTTACCAACTGACGTTTTAAAGGGGAGATGTGCAGTGGGTTGCCAGTGTGTGTGGGCAGCAGGAGTGTGTACCAGTGTCCGCTTTCCGCTTGGTTCAAAACACCATGCACATTTTGAAAGGGTCACTTGCCAGTCTTATTCCATTACCCATCTCTACAGCCTTGTCTAACATCTCCTGCTCCTGTTTTAGGAGATTCATCCATGACATGCCTGTGCATGGTACTGGTTTAACGACTTCGTTTTCGTtcgtttgttggtttgtttgttttctgttgtgtTGGTT
>TCONS_00032407
ATGTGAAGGCTGAGGTGATGATGCCGCCCGATGAACTGGAGGATGAAGAacatcatcaccatcaccatcatcacgAAACATCGACTGCTCTTACACGGATGCCCCCACCTGTCAAGCAGTACCGCGCTCCCACCCCCAAACCAGTAATGGCCAAAGAGAGCAAACCCGAACCCAAACTGAAGAAGCAGGAATCGCTGAAGCCAAAGAGCCTAGCAGAAACTAAGAAAGCCAGCATGGAAATTACTACTGACATTGTTGAGGAGGAATCAGGTCCCAACTCAATATTGGTCATACTAGTGATGCTGATAAATATTGGACTGGCAATTATTTTTGTCCATTTCCTCACTTGACGGAACATTAACCTCAGGTAAGACTCTCGCACTCAGATGGAGGATTTTGCAGGTTGCCATAGAACCTGATCTTTTGCCCCCTAAATATTAGTCTACCTTACTCTTGCCATGTAATTGCAGCTGTGCCTGAATGTTATTCAACATAATTACTTACCCTCTAACTGTTTCGACCCTTCAGTGAGCTCATGAAAACTAGCGGCATAGGCCCCTAATTCTCCGCAGTTGCGTCAATGGCCTTTAAAACAAAATGGCGCCAGTCAGACTCAGACACAGGCAAAGGACTGGACGAATGAAATCATGGGAGAAAGACGAAACCCGGACCATTCGGCCTGAGCCAGCCCAGTTCCTCTGGCGATGATTTGTGACTCGCTTGGGCTCTGAAAGCTGAAGCAAGCAGTCGTTGGGAAAGAAAAAGAATCTGCTGATCCAAGCCGTACCCAGTCAAGTGCATGTCCACCCCGCTGCTCTGCGGGGAGGGGTGGAATGGGGGGACTTAACTGGATATGTTCGGAGATGCACTTTCAGTTGACGGAAGCGAACAGCTGCCTTACTATTTTACCAACTGACGTTTTAAAGGGGAGATGTGCAGTGGGTTGCCAGTGTGTGTGGGCAGCA

Function

symbol description
jph1b Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of junctional membrane complex. Predicted to be active in endoplasmic reticulum membrane; plasma membrane; and sarcoplasmic reticulum. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease axonal type 2K. Orthologous to human JPH1 (junctophilin 1).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016529 sarcoplasmic reticulum cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030314 junctional membrane complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-060616-389 Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of junctional membrane complex. Predicted to be active in endoplasmic reticulum membrane; plasma membrane; and sarcoplasmic reticulum. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease axonal type 2K. Orthologous to human JPH1 (junctophilin 1).

Ensembl:

ensembl_id ENSDARG00000038826

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032405 False 2788 mRNA 0.51 6 30290719 30324297
TCONS_00032406 False 3270 mRNA 0.53 6 30292072 30324610
TCONS_00032407 True 965 lncRNA 0.49 2 30292294 30294917

Neighbor

gene id symbol gene type direction distance location
XLOC_016468 elocb coding downstream 40408 30244376 ~ 30250311 (-)
XLOC_016467 ube2w coding downstream 90513 30193747 ~ 30200206 (-)
XLOC_016466 NA coding downstream 106082 30183095 ~ 30184637 (-)
XLOC_016464 rpl7 coding downstream 108366 30177476 ~ 30182353 (-)
XLOC_016465 CT027743.1 coding downstream 109500 30181130 ~ 30181219 (-)
XLOC_016470 NA coding upstream 4929 30329539 ~ 30346274 (-)
XLOC_016471 cbln2a coding upstream 134096 30458706 ~ 30460293 (-)
XLOC_016472 ctnnd2b coding upstream 229646 30554256 ~ 30693742 (-)
XLOC_016473 GPR141 coding upstream 389258 30713868 ~ 30721502 (-)
XLOC_016474 rp1 coding upstream 408276 30732886 ~ 30734098 (-)
XLOC_016460 NA non-coding downstream 326006 29959590 ~ 29964713 (-)
XLOC_016458 NA non-coding downstream 390836 29842313 ~ 29899883 (-)
XLOC_016457 BX511112.1 non-coding downstream 523429 29764395 ~ 29767290 (-)
XLOC_016475 AL929271.1 non-coding upstream 427367 30751977 ~ 30752109 (-)
XLOC_016479 NA non-coding upstream 735583 31060193 ~ 31075713 (-)
XLOC_016480 NA non-coding upstream 753244 31077854 ~ 31108947 (-)
XLOC_016502 BX323064.1 non-coding upstream 1549788 31874398 ~ 31874836 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G11856 jph1b,LOC107686034,LOC107746914,LOC107550709,LOC107584332,LOC107732545,LOC107664083 non-coding NC_056700.1 CM032069.1 14108155 ~ 14166955 (+)