XLOC_016464 (rpl7)


Basic Information

Item Value
gene id XLOC_016464
gene name rpl7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 30177476 ~ 30182353 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032395
TACCGCGCATGCGTAGAAGCCTCTTTTACTGTAGGGATAATGGCGGGTGAAACGAAGAAGAAGATTCCCTCAGTCCCAGAAAGCCTCTTGAAGAGGCGACAGCGGTTCGCTGCCATCAGGGCCGTACGTCTGAAGAAAGCGAAGGCTGACAAGAAGGCCAGCAAAGTCACCAGGAAGCTCATCTTCAAGAGAGCTGAAGCTTACCACAAGGAGTACAAGCAGCTGTACAGGCGTGAAATCCGCATGAGCAGGATGGCTCGTAAGGCTGGAAACTATTACGTCCCGGCTGAGCCCAAACTGGCTTTTGTCATCAGGATCAGAGGTATCAATGGTGTCAGCCCTAAAGTGCGCAAGGTGCTTCAGCTGCTTCGTCTCCGCCAGATCTTCAACGGTGTCTTTGTCAAACTGAACAAGGCCTCCATCAACATGCTCCGAATTGCAGAGCCCTACATTGCCTGGGGCTACCCCAACCTTAAATCAGTGCGGGAGCTCATCTACAAGCGTGGATTTGGCAAGATCAAGAAGCAGCGCATTGCTCTGACAGACAACTCTCTCATTGAGAAGACCCTCGGTCAGTGTGGAATCATCTGCATTGAGGATCTCATCCATGAGATCTACACTGTTGGGAAGAACTTCAAGGCTGCCAATAACTTCCTTTGGCCATTCAAATTGTCCTCTCCTCGTGGTGGCATGAACAAGAAGACCACTCACTTTGTGGAGGGAGGCGATGCAGGAAACAGGGAGGACCAGATCAACAGACTCGTCAGGAGGATGAACTAGGAACACGTGgtTTTTGGAACATTCTCTGCTGTTGGTCTGTgaagaaaataaaatcatttacacaca
>TCONS_00032396
GCTCATCTACAAGCGTGGATTTGGCAAGATCAAGAAGCAGCGCATTGCTCTGACAGACAACTCTCTCATTGAGAAGACCCTCGGTCAGTGTGGAATCATCTGCATTGAGGATCTCATCCATGAGATCTACACTGTTGGGAAGAACTTCAAGGCTGCCAATAACTTCCTTTGGCCATTCAAATTGTCCTCTCCTCGTGGTGGCATGAACAAGAAGACCACTCACTTTGTGGAGGGAGGCGATGCAGGAAACAGGGAGGACCAGATCAACAGACTCGTCAGGAGGATGAACTAGGAACACGTGGTGAGCACCAGACAGCAGTAGATGCTTTGTTCTTCAGTAGTTTGACAGTTGTTCATTTACTTTTGTAGACCAGGTGATAAGAGCGAAGTGTTCTAGTGTAAGAAGTGCTGGTAATTTGCATATTGTGTGCTGTACTGCCTGTTCATTTCTATTAATTGATCTCAGAAACATGACCTTTAGGGAGTACTTCTAT

Function

symbol description
rpl7 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Acts upstream of or within regulation of cell cycle. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Orthologous to human RPL7 (ribosomal protein L7).

GO:

id name namespace
GO:0051726 regulation of cell cycle biological_process
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03010 Ribosome
ko05171 Coronavirus disease - COVID-19
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-030131-8654 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Acts upstream of or within regulation of cell cycle. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Orthologous to human RPL7 (ribosomal protein L7).

Ensembl:

ensembl_id ENSDARG00000007320

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032395 False 846 mRNA 0.50 7 30177476 30182353
TCONS_00032396 True 494 lncRNA 0.45 2 30177899 30178473

Neighbor

gene id symbol gene type direction distance location
XLOC_016463 trpa1a coding downstream 42030 30116486 ~ 30135446 (-)
XLOC_016462 shhb coding downstream 122044 30050541 ~ 30055432 (-)
XLOC_016461 cnpy1 coding downstream 181440 29985664 ~ 29996036 (-)
XLOC_016460 NA coding downstream 212763 29959590 ~ 29964713 (-)
XLOC_016459 paxip1 coding downstream 253846 29902294 ~ 29923630 (-)
XLOC_016466 NA coding upstream 742 30183095 ~ 30184637 (-)
XLOC_016467 ube2w coding upstream 11394 30193747 ~ 30200206 (-)
XLOC_016468 elocb coding upstream 62023 30244376 ~ 30250311 (-)
XLOC_016469 jph1b coding upstream 108366 30290719 ~ 30324610 (-)
XLOC_016470 NA coding upstream 147186 30329539 ~ 30346274 (-)
XLOC_016458 NA non-coding downstream 277593 29842313 ~ 29899883 (-)
XLOC_016457 BX511112.1 non-coding downstream 410186 29764395 ~ 29767290 (-)
XLOC_016455 NA non-coding downstream 479195 29694708 ~ 29698281 (-)
XLOC_016453 NA non-coding downstream 1155559 28902994 ~ 29021917 (-)
XLOC_016475 AL929271.1 non-coding upstream 569624 30751977 ~ 30752109 (-)
XLOC_016479 NA non-coding upstream 877840 31060193 ~ 31075713 (-)
XLOC_016480 NA non-coding upstream 895501 31077854 ~ 31108947 (-)

Expression


Co-expression Network