XLOC_016485 (si:ch211-106h4.5)


Basic Information

Item Value
gene id XLOC_016485
gene name si:ch211-106h4.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 31611034 ~ 31614748 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032436
gagatcgtaacctgtgaagagatgatgccaccatagaggacttctaaaTGTATCCATAATCCTGAAACAGACCGTAtcatgagcagatgctgtggtggtcatggagaagtggagagcatgagactgattaatgaaagaccccagtgacagatgagtgCCCACATTGACCCTGTGGTCCAGCCTGAAAACCAGCTGGTGACCTACTCGCACCTGCAGCTTCTCTACGATGGACGCCCAGTGTttgcctccagcgcctagactgcagctctgcatgtGAAGTGtggccagaagagaaatggttgttcccaactgagcctagtttctctcaaggtttattCCTTCCctttcatcaattggaGCTAAAGTCTACAGCCAGTCTGAATGCAGCAACTGAATAAACAGTGGGGTCAATTTTGtggttgaattgcattaataaaaaaaaagtgtggatatttatataaatgtacattcttGAA
>TCONS_00032437
ACCGCATCTTTAGGACCCTAGTTTTTTGTGACAGCGTCACCTGTCGGATTGGATCATGGATGCGCTAATGGATGACACGGATGACAAGGAAAGTgccATCGTACATCCTCTGGGTGTCTTGAGGAGCTGGTCTTTGGATAATGCTGAGCAGGTCTTTCTTCCTGGTAAAGATTATCATTACAGgaGCTAAAGTCTACAGCCAGTCTGAATGCAGCAACTGAATAAACAGTGGGGTCAATTTTGtggttgaattgcattaataaaaaaaaagtgtggatatttatataaatgtaca
>TCONS_00032438
cctgtgaagagatgatgccaccatagaggacttctaaaTGTATCCATAATCCTGAAACAGACCGTAtcatgagcagatgctgtggtggtcatggagaagtggagagcatgagactgattaatgaaagaccccagtgacagatgagtgCCCACATTGACCCTGTGGTCCAGCCTGAAAACCAGCTGGTGACCTACTCGCACCTGCAGCTTCTCTACGATGGACGCCCAGTGTttgcctccagcgcctagactgcagctctgcatgtGAAGTGtggccagaagagaaatggttgttcccaactgagcctagtttctctcaaggaGCTAAAGTCTACAGCCAGTCTGAATGCAGCAACTGAATAAACAGTGGGGTCAATTTTGtggttgaattgcattaataaaaaaaaagtgtggatattta
>TCONS_00032439
TGGATCATGGATGCGCTAATGGATGACACGGATGACAAGGAAAGTgccATCGTACATCCTCTGGGTGTCTTGAGGAGCTGGTCTTTGGATAATGCTGAGCAGGTCTTTCTTCCTGGTAAAGATTATCATTACAGTGAAGTAAAAGAATTTAACAGACAGATTTACAAACAACTGACGAAAGAAGGGAGACCATTCAATAGcggatgcccttccagctgcaacccagtactgggaaacacccatttacactcatacacttgaacatggggagaacatgcaaactccacacagaaatgaccactggcccagccggggcttgaaccagcaaccttcttgctgtgaagcgacggtgctaaccactgtgctgccctatgtGCTCTATGCGGGTGAGTGGGATTGACAAACCACTTGGAGGGAACACTCTTGCTGTCTTAACcagacattttgttataaataatcatgtgcgtttcatgtttattcatataactgctattttatctcttagcacttcatttttgtcttgatatttaatatctcttgtttaaatacactatgaacagcagctgcgctaattattttccttgttccctatttccacctggggatattcatccagaggcctctagagatcgtaacctgtgaagagatgatgccaccatagaggacttctaaaTGTATCCATAATCCTGAAACAGACCGTAtcatgagcagatgctgtggtggtcatggagaagtggagagcatgagactgattaatgaaagaccccagtgacagatg
>TCONS_00032440
GGATGCGCTAATGGATGACACGGATGACAAGGAAAGTgccATCGTACATCCTCTGGGTGTCTTGAGGAGCTGGTCTTTGGATAATGCTGAGCAGGTCTTTCTTCCTGGTAAAGATTATCATTACAGTGAAGTAAAAGAATTTAACAGACAGATTTACAAACAACTGACGAAAGAAGGGAGACCATTCAATAGgggttgccacagcagaaggaaccgccaacttatccagcatatgttttacacagcggatgcccttccagctgcaacccagtactgggaaacacccatttacactcatacacttgaacatggggagaacatgcaaactccacacagaaatgaccactggcccagccggggcttgaaccagcaaccttcttgctgtgaagcgacggtgctaaccactgtgctgccctatgtGCTCTATGCGGaggcctctagagatcgtaacctgtgaagagatgatgccaccatagaggacttctaaaTGTATCCATAATCCTGAAACAGACCGTAtcatgagcagatgctgtggtggtcatggagaagtggagagcatgagactgattaatgaaagaccccagtgac
>TCONS_00032441
GGATTGGATCATGGATGCGCTAATGGATGACACGGATGACAAGGAAAGTgccATCGTACATCCTCTGGGTGTCTTGAGGAGCTGGTCTTTGGATAATGCTGAGCAGGTCTTTCTTCCTGGTAAAGATTATCATTACAGTGAAGTAAAAGAATTTAACAGACAGATTTACAAACAACTGACGAAAGAAGGGAGACCATTCAATAGtccctttatttatcaggggttgccacagcagaaggaaccgccaacttatccagcatatgttttacacagcggatgcccttccagctgcaacccagtactgggaaacacccatttacactcatacacttgaacatggggagaacatgcaaactccacacagaaatgaccactggcccagccggggcttgaaccagcaaccttcttgctgtgaagcgacggtgctaaccactgtgctgccctatgtGCTCTATGCGGaggacttctaaaTGTATCCATAATCCTGAAACAGACCGTAtcatgagcagatgctgtggtggtcatggagaagtggagagcatgagactgattaatgaaagaccccag
>TCONS_00032442
GAGAAGGGTATTCCTGCACAACTGGAGTGGCTGCACTCTCAGGACCACATTTTTAGGACCGCATCTTTAGGACCCTAGTTTTTTGTGACAGCGTCACCTGTCGGATTGGATCATGGATGCGCTAATGGATGACACGGATGACAAGGAAAGTgccATCGTACATCCTCTGGGTGTCTTGAGGAGCTGGTCTTTGGATAATGCTGAGCAGGTCTTTCTTCCTGGTAAAGATTATCATTACAGTGAAGTAAAAGAATTTAACAGACAGATTTACAAACAACTGACGAAAGAAGGGAGACCATTCAATAGtccctttatttatcaggggttgccacagcagaaggaaccgccaacttatccagcatatgttttacacagcggatgcccttccagctgcaacccagtactgggaaacacccatttacactcatacacttgaacatggggagaacatgcaaactccacacagaaatgaccactggcccagccggggcttgaaccagcaaccttcttgctgtgaagcgacggtgctaaccactgtgctgccctatgtGCTCTATGCGGaggcctctagagatcgtaacctgtgaagagatgatgccaccatagaggacttctaaaTGTATCCATAATCCTGAAACAGACCGTAtcatgagcagatgctgtggtggtcatggagaagtggagagcatgagactgattaatgaaagacccc
>TCONS_00032443
CATGGATGCGCTAATGGATGACACGGATGACAAGGAAAGTgccATCGTACATCCTCTGGGTGTCTTGAGGAGCTGGTCTTTGGATAATGCTGAGCAGGTCTTTCTTCCTGGTAAAGATTATCATTACAGTGAAGTAAAAGAATTTAACAGACAGATTTACAAACAACTGACGAAAGAAGGGAGACCATTCAATAGtccctttatttatcaggggttgccacagcagaaggaaccgccaacttatccagcatatgttttacacagcggatgcccttccagctgcaacccagtactgggaaacacccatttacactcatacacttgaacatggggagaacatgcaaactccacacagaaatgaccactggcccagccggggcttgaaccagcaaccttcttgctgtgaagcgacggtgctaaccactgtgctgccctatgtGCTCTATGCGGGTGAGTGGGATTGACAAACCACTTGGAGGGAACACTCTTGCTGTCTTAACcagacattttgttataaataatcatgtgcgtttcatgtttattcatataactgctattttatctcttagcacttcatttttgtcttgatatttaatatctcttgtttaaatacactatgaacagcagctgcgctaattattttccttgttccctatttccacctggggatatt
>TCONS_00032444
cATCGTACATCCTCTGGGTGTCTTGAGGAGCTGGTCTTTGGATAATGCTGAGCAGGTCTTTCTTCCTGGTAAAGATTATCATTACAGTGAAGTAAAAGAATTTAACAGACAGATTTACAAACAACTGACGAAAGAAGGGAGACCATTCAATAGGTGGGTATTGCTcttataaacttaaaaatatggAGTTGGGAGTAAAGTTTCCTGTTTGGTTCTCCCAACAGTGCATACGCTTAAgccagaaataaataaataaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatata
>TCONS_00033868
CAAATCCTGAAAGGTAAATTTAATCTGAATAACAGCAAAAATACCCAAGAAAACATGTGGTCTTGCTGGCAGTGCCATAACCAACTATATTTAACGAATACTTGTTCGTTTAAACGGAGGGAGAAGGCAGAAAAGTGCACGCGACCGACATGTAGAACAACGCGCGGGACGTTCAGCTCCAAACACACCCACGACAGTCAGTGACGCACGTTTGAGTTCATTTTAACCAGAGCCGCtttataagacaataatatgacgATAAGTctagttttaaatatttactcttctcaaaaacatgaaaaaacgtAACTGTGGTAAGTGTATGTTTTAGCAGTTACAATGCTAACTTTTGAAATGGAGAAGGGTATTCCTGCACAACTGGAGTGGCTGCACTCTCAGGACCACATTTTTAGGACCGCATCTTTAGGACCCTAGTTTTTTGTGACAGCGTCACCTGTCGGATTGGATCATGGATGCGCTAATGGATGACACGGATGACAAGGAAAGTgccATCGTACATCCTCTGGGTGTCTTGAGGAGCTGGTCTTTGGATAATGCTGAGCAGGTCTTTCTTCCTGGTAAAGATTATCATTACAGTGAAGTAAAAGAATTTAACAGACAGATTTACAAACAACTGACGAAAGAAGGGAGACCATTCAATAGGTGGGTATTGCTcttataaacttaaaaatatggAGTTGGGAGTAAAGTTTCCTGTTTGGTTCTCCCAACAGTGCATACGCTTAAgccagaaataaataaataaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatata

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-15 No description available

Ensembl:

ensembl_id ENSDARG00000095059

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032436 False 476 processed_transcript 0.45 2 31611034 31612177
TCONS_00032437 False 295 mRNA 0.42 3 31611042 31614334
TCONS_00032438 False 420 processed_transcript 0.47 2 31611054 31612167
TCONS_00032439 False 778 mRNA 0.44 4 31612025 31614285
TCONS_00032440 False 588 mRNA 0.48 5 31612030 31614277
TCONS_00032441 False 567 nonsense_mediated_decay 0.47 5 31612034 31614289
TCONS_00032442 False 712 nonsense_mediated_decay 0.47 5 31612036 31614391
TCONS_00032443 False 673 mRNA 0.43 4 31612194 31614280
TCONS_00032444 False 333 lncRNA 0.29 2 31612853 31613277
TCONS_00033868 True 843 lncRNA 0.37 3 31612853 31614748

Neighbor

gene id symbol gene type direction distance location
XLOC_016483 mrc1b coding downstream 70112 31515853 ~ 31540922 (-)
XLOC_016482 clul1 coding downstream 234427 31363286 ~ 31376607 (-)
XLOC_016481 adcyap1b coding downstream 308415 31296644 ~ 31302619 (-)
XLOC_016480 NA coding downstream 502087 31077854 ~ 31108947 (-)
XLOC_016479 NA coding downstream 535321 31060193 ~ 31075713 (-)
XLOC_016486 e2f5 coding upstream 62042 31676790 ~ 31711547 (-)
XLOC_016487 ralyl coding upstream 104691 31719439 ~ 31754292 (-)
XLOC_016488 and2 coding upstream 148104 31762852 ~ 31767827 (-)
XLOC_016489 retreg1 coding upstream 167095 31781843 ~ 31800521 (-)
XLOC_016490 nol7 coding upstream 215435 31830183 ~ 31833347 (-)
XLOC_016475 AL929271.1 non-coding downstream 858925 30751977 ~ 30752109 (-)
XLOC_016470 NA non-coding downstream 1264760 30329539 ~ 30346274 (-)
XLOC_016466 NA non-coding downstream 1426397 30183095 ~ 30184637 (-)
XLOC_016502 BX323064.1 non-coding upstream 259650 31874398 ~ 31874836 (-)
XLOC_016505 NA non-coding upstream 267659 31882407 ~ 31883178 (-)
XLOC_016510 NA non-coding upstream 580077 32194825 ~ 32201587 (-)
XLOC_016513 BX663499.2 non-coding upstream 678653 32293401 ~ 32293516 (-)
XLOC_016522 NA non-coding upstream 995888 32610636 ~ 32613078 (-)

Expression


Co-expression Network