RNA id: TCONS_00033868


Basic Information

Item Value
RNA id TCONS_00033868
length 843
lncRNA type read_through
GC content 0.37
exon number 3
gene id XLOC_016485
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 31611034 ~ 31614748 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAAATCCTGAAAGGTAAATTTAATCTGAATAACAGCAAAAATACCCAAGAAAACATGTGGTCTTGCTGGCAGTGCCATAACCAACTATATTTAACGAATACTTGTTCGTTTAAACGGAGGGAGAAGGCAGAAAAGTGCACGCGACCGACATGTAGAACAACGCGCGGGACGTTCAGCTCCAAACACACCCACGACAGTCAGTGACGCACGTTTGAGTTCATTTTAACCAGAGCCGCtttataagacaataatatgacgATAAGTctagttttaaatatttactcttctcaaaaacatgaaaaaacgtAACTGTGGTAAGTGTATGTTTTAGCAGTTACAATGCTAACTTTTGAAATGGAGAAGGGTATTCCTGCACAACTGGAGTGGCTGCACTCTCAGGACCACATTTTTAGGACCGCATCTTTAGGACCCTAGTTTTTTGTGACAGCGTCACCTGTCGGATTGGATCATGGATGCGCTAATGGATGACACGGATGACAAGGAAAGTgccATCGTACATCCTCTGGGTGTCTTGAGGAGCTGGTCTTTGGATAATGCTGAGCAGGTCTTTCTTCCTGGTAAAGATTATCATTACAGTGAAGTAAAAGAATTTAACAGACAGATTTACAAACAACTGACGAAAGAAGGGAGACCATTCAATAGGTGGGTATTGCTcttataaacttaaaaatatggAGTTGGGAGTAAAGTTTCCTGTTTGGTTCTCCCAACAGTGCATACGCTTAAgccagaaataaataaataaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033867 lncRNA downstream 503906 31092749 ~ 31108947 (-) True XLOC_016480
TCONS_00033866 lncRNA downstream 512976 31092749 ~ 31099877 (-) False XLOC_016480
TCONS_00033376 lncRNA downstream 514214 31077854 ~ 31098639 (-) False XLOC_016480
TCONS_00033865 lncRNA downstream 515150 31092749 ~ 31097703 (-) False XLOC_016480
TCONS_00033375 lncRNA downstream 532529 31077854 ~ 31080324 (-) False XLOC_016480
TCONS_00033869 lncRNA upstream 267659 31882407 ~ 31883178 (-) False XLOC_016505
TCONS_00032483 lncRNA upstream 282920 31897668 ~ 31898907 (-) True XLOC_016508
TCONS_00033870 lncRNA upstream 580077 32194825 ~ 32201587 (-) True XLOC_016510
TCONS_00032488 lncRNA upstream 602717 32217465 ~ 32220224 (-) False XLOC_016511
TCONS_00033871 lncRNA upstream 602717 32217465 ~ 32232159 (-) False XLOC_016511
TCONS_00032432 mRNA downstream 71931 31515853 ~ 31540922 (-) False XLOC_016483
TCONS_00032434 mRNA downstream 75332 31524723 ~ 31537521 (-) True XLOC_016483
TCONS_00032433 mRNA downstream 91089 31517185 ~ 31521764 (-) False XLOC_016483
TCONS_00032431 mRNA downstream 236246 31370304 ~ 31376607 (-) True XLOC_016482
TCONS_00032430 mRNA downstream 236247 31363286 ~ 31376606 (-) False XLOC_016482
TCONS_00032445 mRNA upstream 8649 31623397 ~ 31664615 (-) False XLOC_016484
TCONS_00032447 mRNA upstream 13167 31627915 ~ 31634978 (-) False XLOC_016484
TCONS_00032448 mRNA upstream 25498 31640246 ~ 31661609 (-) False XLOC_016484
TCONS_00032449 mRNA upstream 27017 31641765 ~ 31651297 (-) True XLOC_016484
TCONS_00032450 mRNA upstream 62042 31676790 ~ 31686403 (-) False XLOC_016486
TCONS_00032436 other downstream 676 31611034 ~ 31612177 (-) False XLOC_016485
TCONS_00032438 other downstream 686 31611054 ~ 31612167 (-) False XLOC_016485
TCONS_00032428 other downstream 311499 31299270 ~ 31301354 (-) False XLOC_016481
TCONS_00032415 other downstream 860744 30751977 ~ 30752109 (-) True XLOC_016475
TCONS_00032402 other downstream 1363105 30245934 ~ 30249748 (-) False XLOC_016468
TCONS_00032446 other upstream 12102 31626850 ~ 31627787 (-) False XLOC_016484
TCONS_00032463 other upstream 241494 31856242 ~ 31859536 (-) True XLOC_016491
TCONS_00032464 other upstream 246605 31861353 ~ 31861398 (-) True XLOC_016492
TCONS_00032465 other upstream 247171 31861919 ~ 31861973 (-) True XLOC_016493
TCONS_00032466 other upstream 247821 31862569 ~ 31862617 (-) True XLOC_016494

Expression Profile

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