RNA id: TCONS_00032449


Basic Information

Item Value
RNA id TCONS_00032449
length 478
RNA type mRNA
GC content 0.51
exon number 4
gene id XLOC_016484
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 31599963 ~ 31664615 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGTACAGCCCGCCTCGCACAGAGATTAATTATGAATGtgaGATGAAGAAGGCGCTGGTCGAGGAGGGCAGTCGGTCTGTTTTACTGTCGCGGCAGCACAGGTTTAATGAGCGCTGCTGCATCCGCTGCTGTTCTCCATTCACCTTCCTGCTCAATACCAAGCGTTCCTGCCTGGACTGCAGCTATAACATCTGCAAAAGCTGCTGCACCTACAGTAAGAAGGACAAAGCCTGGCTGTGCTCCTCCTGCCAGAAGACCAGGCTACTGAAGACCCAGTCGCTGGAGTGGTTCTACAATAATGTGAGAAGGCGTTTTAAAAGGTTTGGCAGTGCCAAAGTGTTAAAGAACCTCTACAGGAGGCATGCGGCTGAGCGTGGAGGACTAGCAGAGCTTACAGAGGGCAGTGCGTATGAGGAGAGTGTCTGCAATGAGAGTAGCGTCTATGAGAGCGACAGCACATTCTACAAACAAATCGAAG

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0030864 cortical actin cytoskeleton cellular_component
GO:0017022 myosin binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-17 Predicted to enable actin binding activity and myosin binding activity. Predicted to act upstream of or within intracellular protein transport. Predicted to be active in cortical actin cytoskeleton. Orthologous to human MYRIP (myosin VIIA and Rab interacting protein).

Ensembl:

ensembl_id ENSDART00000132955

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033868 lncRNA downstream 27017 31612853 ~ 31614748 (-) True XLOC_016485
TCONS_00032444 lncRNA downstream 28488 31612853 ~ 31613277 (-) False XLOC_016485
TCONS_00033867 lncRNA downstream 532818 31092749 ~ 31108947 (-) True XLOC_016480
TCONS_00033866 lncRNA downstream 541888 31092749 ~ 31099877 (-) False XLOC_016480
TCONS_00033865 lncRNA downstream 544062 31092749 ~ 31097703 (-) False XLOC_016480
TCONS_00033869 lncRNA upstream 231110 31882407 ~ 31883178 (-) False XLOC_016505
TCONS_00032483 lncRNA upstream 246371 31897668 ~ 31898907 (-) True XLOC_016508
TCONS_00033870 lncRNA upstream 543528 32194825 ~ 32201587 (-) True XLOC_016510
TCONS_00032488 lncRNA upstream 566168 32217465 ~ 32220224 (-) False XLOC_016511
TCONS_00033871 lncRNA upstream 566168 32217465 ~ 32232159 (-) False XLOC_016511
TCONS_00032447 mRNA downstream 6787 31627915 ~ 31634978 (-) False XLOC_016484
TCONS_00032437 mRNA downstream 27431 31611042 ~ 31614334 (-) False XLOC_016485
TCONS_00032439 mRNA downstream 27480 31612025 ~ 31614285 (-) False XLOC_016485
TCONS_00032443 mRNA downstream 27485 31612194 ~ 31614280 (-) False XLOC_016485
TCONS_00032440 mRNA downstream 27488 31612030 ~ 31614277 (-) False XLOC_016485
TCONS_00032450 mRNA upstream 25493 31676790 ~ 31686403 (-) False XLOC_016486
TCONS_00032451 mRNA upstream 31983 31683280 ~ 31686353 (-) False XLOC_016486
TCONS_00032452 mRNA upstream 35068 31686365 ~ 31711547 (-) False XLOC_016486
TCONS_00032454 mRNA upstream 35569 31686866 ~ 31711547 (-) False XLOC_016486
TCONS_00032453 mRNA upstream 35569 31686866 ~ 31711547 (-) False XLOC_016486
TCONS_00032446 other downstream 13978 31626850 ~ 31627787 (-) False XLOC_016484
TCONS_00032442 other downstream 27374 31612036 ~ 31614391 (-) False XLOC_016485
TCONS_00032441 other downstream 27476 31612034 ~ 31614289 (-) False XLOC_016485
TCONS_00032436 other downstream 29588 31611034 ~ 31612177 (-) False XLOC_016485
TCONS_00032463 other upstream 204945 31856242 ~ 31859536 (-) True XLOC_016491
TCONS_00032464 other upstream 210056 31861353 ~ 31861398 (-) True XLOC_016492
TCONS_00032465 other upstream 210622 31861919 ~ 31861973 (-) True XLOC_016493
TCONS_00032466 other upstream 211272 31862569 ~ 31862617 (-) True XLOC_016494
TCONS_00032467 other upstream 212420 31863717 ~ 31863765 (-) True XLOC_016495

Expression Profile

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