RNA id: TCONS_00033869


Basic Information

Item Value
RNA id TCONS_00033869
length 365
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id XLOC_016505
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 31882407 ~ 31883178 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAGACATGGCAGCGTCTGGAATAATAACGTTTGCTTTGTTAGTAGCCCTAGCCTTAATAGATCTTTTAAATGGACAAACTACACATGCTAAAGTTGTGTTTAAGGCCAAAACTAGAACTGCTATTATCAAATGGACCGTGGAATCGTCTCTTCTGTCCAACGCTCTCCACTTGTACAAAGGTACATCACAGAAAGGTTTAGAAAGGATCATGCATTTCGATGGTGGAGCAAAAAGAGGCACAGCAATCGTACCAAAATATTCTGGATTGGTGAGTGATAAGCAAGTGACTCTGACTATCTCAAAACTGGAGCCCAGTGATGAAGGAACATATTTCTATGCGCAGTGGGATTCTAACAACAGCACA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033868 lncRNA downstream 267659 31612853 ~ 31614748 (-) True XLOC_016485
TCONS_00032444 lncRNA downstream 269130 31612853 ~ 31613277 (-) False XLOC_016485
TCONS_00033867 lncRNA downstream 773460 31092749 ~ 31108947 (-) True XLOC_016480
TCONS_00033866 lncRNA downstream 782530 31092749 ~ 31099877 (-) False XLOC_016480
TCONS_00033376 lncRNA downstream 783768 31077854 ~ 31098639 (-) False XLOC_016480
TCONS_00032483 lncRNA upstream 14490 31897668 ~ 31898907 (-) True XLOC_016508
TCONS_00033870 lncRNA upstream 311647 32194825 ~ 32201587 (-) True XLOC_016510
TCONS_00032488 lncRNA upstream 334287 32217465 ~ 32220224 (-) False XLOC_016511
TCONS_00033871 lncRNA upstream 334287 32217465 ~ 32232159 (-) False XLOC_016511
TCONS_00032491 lncRNA upstream 353057 32236235 ~ 32262287 (-) True XLOC_016511
TCONS_00032462 mRNA downstream 49060 31830183 ~ 31833347 (-) True XLOC_016490
TCONS_00032461 mRNA downstream 81886 31781843 ~ 31800521 (-) True XLOC_016489
TCONS_00032460 mRNA downstream 83690 31781843 ~ 31798717 (-) False XLOC_016489
TCONS_00032459 mRNA downstream 90774 31781843 ~ 31791633 (-) False XLOC_016489
TCONS_00032458 mRNA downstream 114580 31762852 ~ 31767827 (-) True XLOC_016488
TCONS_00032480 mRNA upstream 8157 31891335 ~ 31937005 (-) False XLOC_016508
TCONS_00032482 mRNA upstream 9187 31892365 ~ 31936966 (-) False XLOC_016508
TCONS_00032481 mRNA upstream 9187 31892365 ~ 31936966 (-) False XLOC_016508
TCONS_00032484 mRNA upstream 232673 32115851 ~ 32119196 (-) True XLOC_016509
TCONS_00032485 mRNA upstream 332094 32215272 ~ 32262287 (-) False XLOC_016511
TCONS_00032476 other downstream 1775 31880194 ~ 31880632 (-) True XLOC_016504
TCONS_00032475 other downstream 4582 31877471 ~ 31877825 (-) True XLOC_016503
TCONS_00032474 other downstream 7571 31874398 ~ 31874836 (-) True XLOC_016502
TCONS_00032473 other downstream 8937 31873021 ~ 31873470 (-) True XLOC_016501
TCONS_00032472 other downstream 12853 31869121 ~ 31869554 (-) True XLOC_016500
TCONS_00032478 other upstream 2403 31885581 ~ 31886019 (-) True XLOC_016506
TCONS_00032479 other upstream 5797 31888975 ~ 31889408 (-) True XLOC_016507
TCONS_00032489 other upstream 336731 32219909 ~ 32232159 (-) False XLOC_016511
TCONS_00032495 other upstream 410223 32293401 ~ 32293516 (-) True XLOC_016513
TCONS_00032496 other upstream 472250 32355428 ~ 32356050 (-) True XLOC_016512