RNA id: TCONS_00032441


Basic Information

Item Value
RNA id TCONS_00032441
length 567
RNA type nonsense_mediated_decay
GC content 0.47
exon number 5
gene id XLOC_016485
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 31611034 ~ 31614748 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGATTGGATCATGGATGCGCTAATGGATGACACGGATGACAAGGAAAGTgccATCGTACATCCTCTGGGTGTCTTGAGGAGCTGGTCTTTGGATAATGCTGAGCAGGTCTTTCTTCCTGGTAAAGATTATCATTACAGTGAAGTAAAAGAATTTAACAGACAGATTTACAAACAACTGACGAAAGAAGGGAGACCATTCAATAGtccctttatttatcaggggttgccacagcagaaggaaccgccaacttatccagcatatgttttacacagcggatgcccttccagctgcaacccagtactgggaaacacccatttacactcatacacttgaacatggggagaacatgcaaactccacacagaaatgaccactggcccagccggggcttgaaccagcaaccttcttgctgtgaagcgacggtgctaaccactgtgctgccctatgtGCTCTATGCGGaggacttctaaaTGTATCCATAATCCTGAAACAGACCGTAtcatgagcagatgctgtggtggtcatggagaagtggagagcatgagactgattaatgaaagaccccag

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-15 No description available

Ensembl:

ensembl_id ENSDART00000141780

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033867 lncRNA downstream 503087 31092749 ~ 31108947 (-) True XLOC_016480
TCONS_00033866 lncRNA downstream 512157 31092749 ~ 31099877 (-) False XLOC_016480
TCONS_00033376 lncRNA downstream 513395 31077854 ~ 31098639 (-) False XLOC_016480
TCONS_00033865 lncRNA downstream 514331 31092749 ~ 31097703 (-) False XLOC_016480
TCONS_00033375 lncRNA downstream 531710 31077854 ~ 31080324 (-) False XLOC_016480
TCONS_00033869 lncRNA upstream 268118 31882407 ~ 31883178 (-) False XLOC_016505
TCONS_00032483 lncRNA upstream 283379 31897668 ~ 31898907 (-) True XLOC_016508
TCONS_00033870 lncRNA upstream 580536 32194825 ~ 32201587 (-) True XLOC_016510
TCONS_00032488 lncRNA upstream 603176 32217465 ~ 32220224 (-) False XLOC_016511
TCONS_00033871 lncRNA upstream 603176 32217465 ~ 32232159 (-) False XLOC_016511
TCONS_00032432 mRNA downstream 71112 31515853 ~ 31540922 (-) False XLOC_016483
TCONS_00032434 mRNA downstream 74513 31524723 ~ 31537521 (-) True XLOC_016483
TCONS_00032433 mRNA downstream 90270 31517185 ~ 31521764 (-) False XLOC_016483
TCONS_00032431 mRNA downstream 235427 31370304 ~ 31376607 (-) True XLOC_016482
TCONS_00032430 mRNA downstream 235428 31363286 ~ 31376606 (-) False XLOC_016482
TCONS_00032445 mRNA upstream 9108 31623397 ~ 31664615 (-) False XLOC_016484
TCONS_00032447 mRNA upstream 13626 31627915 ~ 31634978 (-) False XLOC_016484
TCONS_00032448 mRNA upstream 25957 31640246 ~ 31661609 (-) False XLOC_016484
TCONS_00032449 mRNA upstream 27476 31641765 ~ 31651297 (-) True XLOC_016484
TCONS_00032450 mRNA upstream 62501 31676790 ~ 31686403 (-) False XLOC_016486
TCONS_00032428 other downstream 310680 31299270 ~ 31301354 (-) False XLOC_016481
TCONS_00032415 other downstream 859925 30751977 ~ 30752109 (-) True XLOC_016475
TCONS_00032402 other downstream 1362286 30245934 ~ 30249748 (-) False XLOC_016468
TCONS_00032397 other downstream 1430815 30181130 ~ 30181219 (-) True XLOC_016465
TCONS_00032392 other downstream 1623337 29986258 ~ 29988697 (-) True XLOC_016461
TCONS_00032446 other upstream 12561 31626850 ~ 31627787 (-) False XLOC_016484
TCONS_00032463 other upstream 241953 31856242 ~ 31859536 (-) True XLOC_016491
TCONS_00032464 other upstream 247064 31861353 ~ 31861398 (-) True XLOC_016492
TCONS_00032465 other upstream 247630 31861919 ~ 31861973 (-) True XLOC_016493
TCONS_00032466 other upstream 248280 31862569 ~ 31862617 (-) True XLOC_016494

Expression Profile

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