RNA id: TCONS_00033375


Basic Information

Item Value
RNA id TCONS_00033375
length 2120
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id XLOC_016480
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 31077854 ~ 31108947 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATTTCTCAAGTTAGCATGCTGGTTTTAGGCTCTGTTCATGAATATAAACTGGGTTTTTGCATtttcatttcatacaatttagaTAGAGCTAGTTATCTCTGTGTTATCCTAGAGTTTTGTACTTTGGAAGCATCACAAAACCCATAGATATTGAgatgtttaaatgtaatatagGCATGTAATAAAACGACATGTACAATTAAAGAGTTAATTAAGGTGATGATCATACTTAACTTGAACTAGTTCTGATACTTTCTATCTTAATCCAACAACTGTTgttttactacactgtaaaaagttcttCAAGGGTGTTGTCCATaggaattaattttaaaaagtatatttcttCCAATAAATTGATTACCTTTCCATTTTGAATTAATTACGTTTGTAGTTATATTGCCTGCAATATTCAGTTTTTTCATTATTCACTTACCAACTATAGGATTCAAGTACCTCTGTGGTGAGGAAGAGAGACGTGGCTCTGAGATGCCTCATTGAATACATGGGAGAGAGTGGGCAAAAGCTGATCTCTGACTACTATGGAAAAACAGAGAGCAGTGTCTATGAAGACTTGAAAATGCGCAATATGCAGATATATGTCTGCCGTGTTCCAGATGTGGTGGGCATCATCATTGAGGGCATCCCTGTACTTACTCGTCTTGGAAACCACGCCAGGGCTATGAACTTACAGTATCCACCACAACTCAGCAAAACATTTCAGGTGTTTCAAAGACATTTTGTGGGACTTGACACACTGCGTCCAAAGTCTTCCTCCTGATTCATGACACAAAAACTTCtgagttagttaattagttgccGCTCAGAGGTTCTGTTTCTTTGCTTCACCACTTTTGTTCAATGGACAGTTTGACTTGGAACAATGTGGTAGTCACGCACCGACTTCTTCAGTTTCTGGATAAGTCTGCAGCAAATATGGGCATttgatttgcttttgtatatatGGGGCaaagtttgttttgttatgtCAAATGCTGAGATCAGaggcactttattttttttatttcaatgttgTAGTACATATGAAAATGTACTGTACTGTGTACACAACAGGCATCAGTTGGACACCTCAAACCACCATgaggatccacacacacacacacaaacacacacactctcagtttTAATGGATAAAgtttagaagggatacagctgcagatactcgcatcattcattcattttccttcagcttagtccttcatttatcaggggttgccacagcgaaatgagccaccaactactctggcatatgttttacacagtggatgcccttccagctgcaacccagtactgggagacacccatacacacttatatactatggccaatttagttcatcaattcccctatcgcacctggaggaaacccatgccaacatggggagaacatgcaaactccaaacagaaacaccaactgacccagtcgggactcaaaccagcaaccttccaaggccacaatgctaaccactgagccaacttgcataaatatagcatcatttttgtgacattgtacaacaattatatgtatatatttaccgtactgtgagggttgggctTAAGTTTGGGGTAGACCttaataaaatactgtttactgggtaatttaataaatgatacgAGTATATTACTGCTTTTACACTGTGaaggttggggtagatgttaataaaatgtatttaattcaaattttatGGGTATTGTAATACATAATCTAAACTAtatgataacaataatattaattcctCACAtctatatagcgcttttctgggcactcaaagcgctttacacacattgaggggaatctcctcatcctccaccagtgtgcagcatccacttggattaggcgacggcagccatactgcaccagactgcacaccagctgattggtggagaggagacagagtgatgaagacagtgatgatatggggatggtcaggaggccatgatggacagaggccattgggcagatttggccaggatgccagggttaaacccctactctttttccaaggatatcctgggatttttaacgagcacagagagtcgggacctcggtttaacgtctcatccgaaagatagAATGGTTCACTTATATCGCTTgttgc

Function

GO:

id name namespace
GO:0001706 endoderm formation biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0002030 inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0002043 blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0060976 coronary vasculature development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0043951 negative regulation of cAMP-mediated signaling biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:1904323 regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:1904325 positive regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0051279 regulation of release of sequestered calcium ion into cytosol biological_process
GO:0051281 positive regulation of release of sequestered calcium ion into cytosol biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0031399 regulation of protein modification process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0010522 regulation of calcium ion transport into cytosol biological_process
GO:0010524 positive regulation of calcium ion transport into cytosol biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:1903587 regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:1903589 positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:1904427 positive regulation of calcium ion transmembrane transport biological_process
GO:0035479 angioblast cell migration from lateral mesoderm to midline biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0060182 apelin receptor activity molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033864 lncRNA downstream 2141 31074408 ~ 31075713 (-) True XLOC_016479
TCONS_00033374 lncRNA downstream 2868 31060193 ~ 31074986 (-) False XLOC_016479
TCONS_00033863 lncRNA downstream 731580 30329539 ~ 30346274 (-) True XLOC_016470
TCONS_00033862 lncRNA downstream 731587 30329539 ~ 30346267 (-) False XLOC_016470
TCONS_00032407 lncRNA downstream 782937 30292294 ~ 30294917 (-) True XLOC_016469
TCONS_00033865 lncRNA upstream 12425 31092749 ~ 31097703 (-) False XLOC_016480
TCONS_00033866 lncRNA upstream 12425 31092749 ~ 31099877 (-) False XLOC_016480
TCONS_00033867 lncRNA upstream 12425 31092749 ~ 31108947 (-) True XLOC_016480
TCONS_00032444 lncRNA upstream 532529 31612853 ~ 31613277 (-) False XLOC_016485
TCONS_00033868 lncRNA upstream 532529 31612853 ~ 31614748 (-) True XLOC_016485
TCONS_00032423 mRNA downstream 59758 30986996 ~ 31018096 (-) False XLOC_016478
TCONS_00032424 mRNA downstream 59792 31011483 ~ 31018062 (-) True XLOC_016478
TCONS_00032422 mRNA downstream 90316 30986996 ~ 30987538 (-) False XLOC_016478
TCONS_00032421 mRNA downstream 164932 30910144 ~ 30912922 (-) True XLOC_016477
TCONS_00032420 mRNA downstream 165547 30910134 ~ 30912307 (-) False XLOC_016477
TCONS_00032426 mRNA upstream 216320 31296644 ~ 31301929 (-) False XLOC_016481
TCONS_00032425 mRNA upstream 216320 31296644 ~ 31301929 (-) False XLOC_016481
TCONS_00032427 mRNA upstream 216826 31297150 ~ 31302615 (-) False XLOC_016481
TCONS_00032429 mRNA upstream 219063 31299387 ~ 31302619 (-) True XLOC_016481
TCONS_00032430 mRNA upstream 282962 31363286 ~ 31376606 (-) False XLOC_016482
TCONS_00032415 other downstream 325745 30751977 ~ 30752109 (-) True XLOC_016475
TCONS_00032402 other downstream 828106 30245934 ~ 30249748 (-) False XLOC_016468
TCONS_00032397 other downstream 896635 30181130 ~ 30181219 (-) True XLOC_016465
TCONS_00032392 other downstream 1089157 29986258 ~ 29988697 (-) True XLOC_016461
TCONS_00032385 other downstream 1310564 29764395 ~ 29767290 (-) True XLOC_016457
TCONS_00032428 other upstream 218946 31299270 ~ 31301354 (-) False XLOC_016481
TCONS_00032436 other upstream 530710 31611034 ~ 31612177 (-) False XLOC_016485
TCONS_00032438 other upstream 530730 31611054 ~ 31612167 (-) False XLOC_016485
TCONS_00032441 other upstream 531710 31612034 ~ 31614289 (-) False XLOC_016485
TCONS_00032442 other upstream 531712 31612036 ~ 31614391 (-) False XLOC_016485

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000065_01867964_01868983.mRNA True 1345 mRNA 0.38 2 CI01000065 1867788 ~ 1869813 (+)