RNA id: TCONS_00032421


Basic Information

Item Value
RNA id TCONS_00032421
length 893
RNA type mRNA
GC content 0.45
exon number 4
gene id XLOC_016477
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 30910134 ~ 30912922 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATCAACAGAGGGGTGCCGTCCGTGGTGGGCTTCAGTGACCAGCGTGGCAAACATTGTTTGGGTTTCCTGCCCTTTTTTATACAGCAGTAGttttaatatCACAGAATTGTCAAAATGTCTAGCAAAAGGGCTAAGGGAAAGACCACCAAAAAGCGCCCCCAGCGGGCCACGTCAAACGTGTTTGCCATGTTCGACCAGTCGCAGATCCAGGAGTTCAAGGAAGCTTTCAACATGATCGACCAGAACCGCGATGGCTTCATTGATAAGGAGGATCTGCATGATATGTTGGCATCCTTAGGTAAGAACCCCACAGATGAATATCTGGAGGCGATGATGAATGAAGCCCCTGGTCCCATCAACTTCACTATGTTCCTCACAATGTTTGGAGAGAAACTCAATGGCACAGACCCTGAGGATGTTATCAAAAATGCCTTTGCTTGTTTTGACGAGGAGGGGACAGGTTTTATTCAGGAGGACTATCTGAGGGAGCTCTTGACCACTATGGGAGACAGATTTACAGATGAAGAAGTAGACGAGCTCTTTCGAGAGGCTCCTATTGACAAGAAAGGAAACTTCAACTATGTGGAATTCACACGCATCCTGAAGCACGGCGCTAAAGACAAGGACGATTAGGATGAGGCCAAACACTGCTGAAACTAATGAAAATGACACTGTCACACTACAACATGTCTAATTGTCTCTTTTTCCCCCTACGCTCATGGGGTAGTGCAAAAGGGAACATCAGCAAGGCAACTGGACCTTCTCCTAAACAGTCTTAGTAGATTTGTACATAGCTGTGAAAAGCATAAAGACATGTAATCTGTGGTGAAGTCAAACGAATGATGTTCTGGTGTGTAAATGTTGAGAAATAAATCctggaattattaaaaaa

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9028 Predicted to enable calcium ion binding activity. Orthologous to human MYL12A (myosin light chain 12A).

Ensembl:

ensembl_id ENSDART00000141669

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033863 lncRNA downstream 563870 30329539 ~ 30346274 (-) True XLOC_016470
TCONS_00033862 lncRNA downstream 563877 30329539 ~ 30346267 (-) False XLOC_016470
TCONS_00032407 lncRNA downstream 615227 30292294 ~ 30294917 (-) True XLOC_016469
TCONS_00032404 lncRNA downstream 660398 30248856 ~ 30249746 (-) True XLOC_016468
TCONS_00033861 lncRNA downstream 725507 30183095 ~ 30184637 (-) True XLOC_016466
TCONS_00033374 lncRNA upstream 147271 31060193 ~ 31074986 (-) False XLOC_016479
TCONS_00033864 lncRNA upstream 161486 31074408 ~ 31075713 (-) True XLOC_016479
TCONS_00033375 lncRNA upstream 164932 31077854 ~ 31080324 (-) False XLOC_016480
TCONS_00033376 lncRNA upstream 164932 31077854 ~ 31098639 (-) False XLOC_016480
TCONS_00033865 lncRNA upstream 179827 31092749 ~ 31097703 (-) False XLOC_016480
TCONS_00032417 mRNA downstream 125642 30756629 ~ 30784502 (-) False XLOC_016476
TCONS_00032419 mRNA downstream 125811 30762096 ~ 30784333 (-) True XLOC_016476
TCONS_00032416 mRNA downstream 125946 30752501 ~ 30784198 (-) False XLOC_016476
TCONS_00032418 mRNA downstream 139408 30756705 ~ 30770736 (-) False XLOC_016476
TCONS_00032414 mRNA downstream 176046 30732886 ~ 30734098 (-) True XLOC_016474
TCONS_00032422 mRNA upstream 74074 30986996 ~ 30987538 (-) False XLOC_016478
TCONS_00032423 mRNA upstream 74074 30986996 ~ 31018096 (-) False XLOC_016478
TCONS_00032424 mRNA upstream 98561 31011483 ~ 31018062 (-) True XLOC_016478
TCONS_00032426 mRNA upstream 383722 31296644 ~ 31301929 (-) False XLOC_016481
TCONS_00032425 mRNA upstream 383722 31296644 ~ 31301929 (-) False XLOC_016481
TCONS_00032415 other downstream 158035 30751977 ~ 30752109 (-) True XLOC_016475
TCONS_00032402 other downstream 660396 30245934 ~ 30249748 (-) False XLOC_016468
TCONS_00032397 other downstream 728925 30181130 ~ 30181219 (-) True XLOC_016465
TCONS_00032392 other downstream 921447 29986258 ~ 29988697 (-) True XLOC_016461
TCONS_00032385 other downstream 1142854 29764395 ~ 29767290 (-) True XLOC_016457
TCONS_00032428 other upstream 386348 31299270 ~ 31301354 (-) False XLOC_016481
TCONS_00032436 other upstream 698112 31611034 ~ 31612177 (-) False XLOC_016485
TCONS_00032438 other upstream 698132 31611054 ~ 31612167 (-) False XLOC_016485
TCONS_00032441 other upstream 699112 31612034 ~ 31614289 (-) False XLOC_016485
TCONS_00032442 other upstream 699114 31612036 ~ 31614391 (-) False XLOC_016485

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU35490 True 926 lncRNA 0.44 4 CI01000004 11172182 ~ 11175224 (+)
bowfin (Amia calva) AMCG00019680 True 2119 mRNA 0.39 4 CM030124.1 37365974 ~ 37371256 (+)
mexican tetra (Astyanax mexicanus) TU35490 True 2358 lncRNA 0.45 3 NC_035899.1 45524488 ~ 45528585 (+)