RNA id: TCONS_00032414


Basic Information

Item Value
RNA id TCONS_00032414
length 778
RNA type mRNA
GC content 0.46
exon number 2
gene id XLOC_016474
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 30732886 ~ 30734098 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTGACCTGTCCCCAGGTAGCATGCAAACATTGGTCTCCAGGCCACTGCTCCCTCAGTCAGACCCCATTACCACTAAAAGGGTATGTTTCTACAAGAGCGGTGACCCTCAGTTTACTGGGCACCGGATGGTCATCAACAGTCGCACTTTTAAAACCTTTGATGCCCTACTAGATGCCCTCTCAAAGAAAGTGCCTCTGCCATTTGGAGTAAGGACCATCACAACACCCAGGGGAACACATGCTGTCTGTTCCCTTGATGATGTGCAGGATGGGGGCTCTTATCTGTGCTCGGATCAGAAGAAAGTCAAGCCTTTTAACTTGGACGAGGTCCACAAGAGACAGGTCCCTTGGAACACTACCAGACCTGTCAGTGCGGGACGCCAAGCACGCAGAGAACTGGTCCGGCAACTAGCAAAGAGAAATCAAGTGTCCAcaagaacaataaaaatgtcGGAAAACACTGTGGTGGTGCGGACACCAAAAAGACTGACAGTTTACAAAAACAGAGATCCAAGCATGAAGCGAGTAATTGTTCTTCATAGGAGAATAGCCCCTACGTTTGAAGCTCTTTTGGATTATCTTTCTCAAATGATGCAGTTTCCTGTTGTAAAGCTTTACACAGAAGATGGCAGAAGAATTGAAGGACTTTCTGCTCTTATTTTGTGCACTGGAATTGTTGTGGCAGCTGGTAATGAACCCTTCAGAATAGGGATATACAATCTTCAGGCTCCCACAAAAATTCAGTCAAAGATACCTTCTGAATCTGAATCCCTGCAAC

Function

GO: NA

KEGG:

id description
ko04812 Cytoskeleton proteins

Ensembl:

ensembl_id ENSDART00000133769

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033863 lncRNA downstream 386612 30329539 ~ 30346274 (-) True XLOC_016470
TCONS_00033862 lncRNA downstream 386619 30329539 ~ 30346267 (-) False XLOC_016470
TCONS_00032407 lncRNA downstream 437969 30292294 ~ 30294917 (-) True XLOC_016469
TCONS_00032404 lncRNA downstream 483140 30248856 ~ 30249746 (-) True XLOC_016468
TCONS_00033861 lncRNA downstream 548249 30183095 ~ 30184637 (-) True XLOC_016466
TCONS_00033374 lncRNA upstream 326095 31060193 ~ 31074986 (-) False XLOC_016479
TCONS_00033864 lncRNA upstream 340310 31074408 ~ 31075713 (-) True XLOC_016479
TCONS_00033375 lncRNA upstream 343756 31077854 ~ 31080324 (-) False XLOC_016480
TCONS_00033376 lncRNA upstream 343756 31077854 ~ 31098639 (-) False XLOC_016480
TCONS_00033865 lncRNA upstream 358651 31092749 ~ 31097703 (-) False XLOC_016480
TCONS_00032413 mRNA downstream 11384 30713868 ~ 30721502 (-) True XLOC_016473
TCONS_00032409 mRNA downstream 39144 30554256 ~ 30693742 (-) False XLOC_016472
TCONS_00032410 mRNA downstream 64306 30556287 ~ 30668580 (-) False XLOC_016472
TCONS_00032412 mRNA downstream 73664 30618211 ~ 30659222 (-) True XLOC_016472
TCONS_00032411 mRNA downstream 121497 30579845 ~ 30611389 (-) False XLOC_016472
TCONS_00032416 mRNA upstream 18403 30752501 ~ 30784198 (-) False XLOC_016476
TCONS_00032417 mRNA upstream 22531 30756629 ~ 30784502 (-) False XLOC_016476
TCONS_00032418 mRNA upstream 22607 30756705 ~ 30770736 (-) False XLOC_016476
TCONS_00032419 mRNA upstream 27998 30762096 ~ 30784333 (-) True XLOC_016476
TCONS_00032420 mRNA upstream 176036 30910134 ~ 30912307 (-) False XLOC_016477
TCONS_00032402 other downstream 483138 30245934 ~ 30249748 (-) False XLOC_016468
TCONS_00032397 other downstream 551667 30181130 ~ 30181219 (-) True XLOC_016465
TCONS_00032392 other downstream 744189 29986258 ~ 29988697 (-) True XLOC_016461
TCONS_00032385 other downstream 965596 29764395 ~ 29767290 (-) True XLOC_016457
TCONS_00032358 other downstream 3247577 27484559 ~ 27485309 (-) True XLOC_016432
TCONS_00032415 other upstream 17879 30751977 ~ 30752109 (-) True XLOC_016475
TCONS_00032428 other upstream 565172 31299270 ~ 31301354 (-) False XLOC_016481
TCONS_00032436 other upstream 876936 31611034 ~ 31612177 (-) False XLOC_016485
TCONS_00032438 other upstream 876956 31611054 ~ 31612167 (-) False XLOC_016485
TCONS_00032441 other upstream 877936 31612034 ~ 31614289 (-) False XLOC_016485

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_11052319_11059170.mRNA True 7005 mRNA 0.42 2 CI01000004 11051394 ~ 11059170 (-)