RNA id: TCONS_00032358


Basic Information

Item Value
RNA id TCONS_00032358
length 442
RNA type processed_transcript
GC content 0.48
exon number 2
gene id XLOC_016432
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 27484438 ~ 27496957 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTCTCAGGGAACCAGAACAGCAGGTGTGGGGAAAAGTAATGACAGGACTCCATTTTACTGGCTGTCACATCCCAGCATGCTCGGCGCTGTCCAGTCGAGTGCACCGACTGAAAGATGACAAGCTGACAGCTCACCACACAGGATACCAGGCGTCTAATGACATTCTGCGAGTcctctgtgtgagtgtgaTTGTTCGTCTGGGGGAATGTTGCCACATCAACACAAAATCGAACAATGGACCAAAATATAATGGCTCTGGACGCTACCAGTTTCCAAGGCAACAATTGTGACAGATTTGGGGGAGACAAGACAGGTAATTGGAAAAAGATTGATGGGGTACAAGAGAGTGGAAAAAAAACCCTATCAAAGGAGGTCTCTCTGGGAATAACAACAATACAATAAAGGGTCTTGCATCCTCTTGGACCATCCGCGGCCTCCTGT

Function

GO:

id name namespace
GO:0000028 ribosomal small subunit assembly biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0006412 translation biological_process
GO:0006414 translational elongation biological_process
GO:0048856 anatomical structure development biological_process
GO:0010467 gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042255 ribosome assembly biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005840 ribosome cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000133294

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033841 lncRNA downstream 20118 27463385 ~ 27464441 (-) True XLOC_016430
TCONS_00033840 lncRNA downstream 94461 27388566 ~ 27390098 (-) True XLOC_016429
TCONS_00032355 lncRNA downstream 98630 27384378 ~ 27385929 (-) True XLOC_016428
TCONS_00032352 lncRNA downstream 157019 27319146 ~ 27327540 (-) False XLOC_016427
TCONS_00032340 lncRNA downstream 853041 26630615 ~ 26631518 (-) False XLOC_016420
TCONS_00033845 lncRNA upstream 55808 27541117 ~ 27548331 (-) False XLOC_016433
TCONS_00033846 lncRNA upstream 62559 27547868 ~ 27548940 (-) True XLOC_016433
TCONS_00033847 lncRNA upstream 178252 27663561 ~ 27664559 (-) True XLOC_016437
TCONS_00033848 lncRNA upstream 181771 27667080 ~ 27670134 (-) True XLOC_016438
TCONS_00032368 lncRNA upstream 407115 27892424 ~ 27900499 (-) True XLOC_016441
TCONS_00032357 mRNA downstream 10914 27469899 ~ 27473645 (-) True XLOC_016431
TCONS_00032356 mRNA downstream 13164 27469669 ~ 27471395 (-) False XLOC_016431
TCONS_00032354 mRNA downstream 98625 27379861 ~ 27385934 (-) False XLOC_016428
TCONS_00032353 mRNA downstream 154378 27325325 ~ 27330181 (-) True XLOC_016427
TCONS_00032350 mRNA downstream 154892 27318174 ~ 27329667 (-) False XLOC_016427
TCONS_00032359 mRNA upstream 70859 27556168 ~ 27575803 (-) True XLOC_016434
TCONS_00032360 mRNA upstream 92161 27577470 ~ 27609189 (-) True XLOC_016435
TCONS_00032361 mRNA upstream 126647 27611956 ~ 27651674 (-) False XLOC_016436
TCONS_00032362 mRNA upstream 128465 27613774 ~ 27619954 (-) True XLOC_016436
TCONS_00032363 mRNA upstream 184975 27670284 ~ 27775236 (-) False XLOC_016439
TCONS_00032346 other downstream 250778 27233666 ~ 27233781 (-) True XLOC_016425
TCONS_00032345 other downstream 444755 27039688 ~ 27039804 (-) True XLOC_016424
TCONS_00032344 other downstream 768561 26714098 ~ 26715998 (-) True XLOC_016423
TCONS_00032342 other downstream 839161 26645317 ~ 26645398 (-) True XLOC_016421
TCONS_00032314 other downstream 1048446 26434936 ~ 26436113 (-) False XLOC_016409
TCONS_00032385 other upstream 2279086 29764395 ~ 29767290 (-) True XLOC_016457
TCONS_00032392 other upstream 2500949 29986258 ~ 29988697 (-) True XLOC_016461
TCONS_00032397 other upstream 2695821 30181130 ~ 30181219 (-) True XLOC_016465
TCONS_00032402 other upstream 2760625 30245934 ~ 30249748 (-) False XLOC_016468
TCONS_00032415 other upstream 3266668 30751977 ~ 30752109 (-) True XLOC_016475

Expression Profile

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