RNA id: TCONS_00032362


Basic Information

Item Value
RNA id TCONS_00032362
length 760
RNA type mRNA
GC content 0.44
exon number 4
gene id XLOC_016436
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 27611956 ~ 27651674 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGGGTGGTTTTCAGTGACTCCTGAGAAGATCGCGGAGCACATCGCTCTGAGGGTGCAGGACTGCTTCAACACAGAGCTCATTATCGATGCCTTCTGTGGTGTGGGTGGAAATGCCATTCAGTTTGCCCTCACTGGTAAAAGAGTGATCGGCATTGATATTGACCCGGTGCGTCTGGCTCTGGCGCAGCACAATGCTGCAGTGTACGGCGTGGAGCAACGCATAGACTTCTTGCAGGGAGATTTCCTTCAGCTGGCTCCACATCTGCGAGGAGACATGGTTTTCCTCAGTCCGCCGTGGGGAGGGCCAGAATATCTAACCGCTGATGTCTTCAACATCCAGACCATGATGACTCCTGATGGATTTGAAATTTTCAGGTTGTCAAAAATGATATCGgacaatattgtttattttctacCTCGAAACGCAGACATGGAGCAGATCGCGTCTCTCGCCGGACCAGGTGGAAAGGTAGAAGTCGAGCAGAATTTTCTGAACAACAAGCTGAAGACGATCACGGCGTACTTTGGGAATTTAATCAAGTGAAAATCATTATGTTTTATTACTTCTTTTATGGTCGTTAACACGTATGTCATCTGTACTCGGTTATTGCACTTATACATGTTATAACTCCTTTTGTAAAGACGTTGATGATGAATTTTATAGACTGTCCTCTTGATGCttctagtttgttttgttttaatgtatttatgttttttccaGCATTGATATAaaacctattaaagtttatttgcaGAACT

Function

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0042127 regulation of cell population proliferation biological_process
GO:0090022 regulation of neutrophil chemotaxis biological_process
GO:0030154 cell differentiation biological_process
GO:0038083 peptidyl-tyrosine autophosphorylation biological_process
GO:0009611 response to wounding biological_process
GO:0001510 RNA methylation biological_process
GO:0006468 protein phosphorylation biological_process
GO:0009452 7-methylguanosine RNA capping biological_process
GO:0030593 neutrophil chemotaxis biological_process
GO:0016310 phosphorylation biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process
GO:0031234 extrinsic component of cytoplasmic side of plasma membrane cellular_component
GO:0005102 signaling receptor binding molecular_function
GO:0016740 transferase activity molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function
GO:0004715 non-membrane spanning protein tyrosine kinase activity molecular_function

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04611 Platelet activation
ko04662 B cell receptor signaling pathway
ko04664 Fc epsilon RI signaling pathway
ko04666 Fc gamma R-mediated phagocytosis
ko04062 Chemokine signaling pathway
ko04730 Long-term depression
ko05203 Viral carcinogenesis
ko05167 Kaposi sarcoma-associated herpesvirus infection
ko05169 Epstein-Barr virus infection
ko05120 Epithelial cell signaling in Helicobacter pylori infection
ko05417 Lipid and atherosclerosis
ko01001 Protein kinases
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-040912-7 Predicted to enable signaling receptor binding activity. Acts upstream of or within neutrophil chemotaxis; regulation of neutrophil chemotaxis; and response to wounding. Predicted to be extrinsic component of cytoplasmic side of plasma membrane. Is expressed in neuromast; post-vent region; and pronephric duct. Orthologous to human LYN (LYN proto-oncogene, Src family tyrosine kinase).

Ensembl:

ensembl_id ENSDART00000144826

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033846 lncRNA downstream 64834 27547868 ~ 27548940 (-) True XLOC_016433
TCONS_00033845 lncRNA downstream 65443 27541117 ~ 27548331 (-) False XLOC_016433
TCONS_00033844 lncRNA downstream 116817 27484438 ~ 27496957 (-) False XLOC_016432
TCONS_00033843 lncRNA downstream 116817 27484438 ~ 27496957 (-) False XLOC_016432
TCONS_00033842 lncRNA downstream 119328 27484438 ~ 27494446 (-) False XLOC_016432
TCONS_00033847 lncRNA upstream 43607 27663561 ~ 27664559 (-) True XLOC_016437
TCONS_00033848 lncRNA upstream 47126 27667080 ~ 27670134 (-) True XLOC_016438
TCONS_00032368 lncRNA upstream 272470 27892424 ~ 27900499 (-) True XLOC_016441
TCONS_00032370 lncRNA upstream 346029 27965983 ~ 27969494 (-) True XLOC_016442
TCONS_00032373 lncRNA upstream 546013 28165967 ~ 28216500 (-) True XLOC_016444
TCONS_00032360 mRNA downstream 4585 27577470 ~ 27609189 (-) True XLOC_016435
TCONS_00032359 mRNA downstream 37971 27556168 ~ 27575803 (-) True XLOC_016434
TCONS_00032357 mRNA downstream 140129 27469899 ~ 27473645 (-) True XLOC_016431
TCONS_00032356 mRNA downstream 142379 27469669 ~ 27471395 (-) False XLOC_016431
TCONS_00032354 mRNA downstream 227840 27379861 ~ 27385934 (-) False XLOC_016428
TCONS_00032363 mRNA upstream 50330 27670284 ~ 27775236 (-) False XLOC_016439
TCONS_00032364 mRNA upstream 154062 27774016 ~ 27774783 (-) True XLOC_016439
TCONS_00032365 mRNA upstream 191084 27811038 ~ 27855576 (-) True XLOC_016440
TCONS_00032366 mRNA upstream 257954 27877908 ~ 27900535 (-) False XLOC_016441
TCONS_00032367 mRNA upstream 258471 27878425 ~ 27900518 (-) False XLOC_016441
TCONS_00032358 other downstream 128465 27484559 ~ 27485309 (-) True XLOC_016432
TCONS_00032346 other downstream 379993 27233666 ~ 27233781 (-) True XLOC_016425
TCONS_00032345 other downstream 573970 27039688 ~ 27039804 (-) True XLOC_016424
TCONS_00032344 other downstream 897776 26714098 ~ 26715998 (-) True XLOC_016423
TCONS_00032342 other downstream 968376 26645317 ~ 26645398 (-) True XLOC_016421
TCONS_00032385 other upstream 2144441 29764395 ~ 29767290 (-) True XLOC_016457
TCONS_00032392 other upstream 2366304 29986258 ~ 29988697 (-) True XLOC_016461
TCONS_00032397 other upstream 2561176 30181130 ~ 30181219 (-) True XLOC_016465
TCONS_00032402 other upstream 2625980 30245934 ~ 30249748 (-) False XLOC_016468
TCONS_00032415 other upstream 3132023 30751977 ~ 30752109 (-) True XLOC_016475

Expression Profile

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