XLOC_016423 (si:dkey-181m9.8)


Basic Information

Item Value
gene id XLOC_016423
gene name si:dkey-181m9.8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 26714098 ~ 26715998 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032344
GATGTTGTCTTCACTTCACAGTTCAATACCGAAGACGTCAACAGCTCAACATGGAGTGTTGTCCTCATCTGTGCCTCAGCATGTCTGCAACaCCCTACCCCAGAGTACAAAGTCCCAGATGAACCTGAATCAAGTCAGTGAAATGGAGATGAGTGGCGTAAGAAGATCATACACGCAAGAGTTGCTGGATTTTGGCATTACGTTTGGGGCTCAGTCTTCAGAGACTAGCCACCAAACAAACCCATTCATCACGCCAGCCTCAGCTCCCACCAGCAGTACTTCTGATGTAGATGACATTGACGACATGTTCAAAAGCCTTCATGTGCAAAGAGTTATCAATATGTACCAGTTGGACACCAGGGAGCAAG

Function

symbol description
si:dkey-181m9.8 Predicted to enable linear polyubiquitin binding activity; polyubiquitin modification-dependent protein binding activity; and ubiquitin protein ligase activity. Predicted to be involved in protein linear polyubiquitination. Predicted to act upstream of or within cellular protein modification process and protein transport. Predicted to be part of LUBAC complex. Orthologous to human RNF31 (ring finger protein 31).

GO:

id name namespace
GO:0006464 cellular protein modification process biological_process
GO:0015031 protein transport biological_process
GO:0071797 LUBAC complex cellular_component
GO:0016740 transferase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-399 Predicted to enable linear polyubiquitin binding activity; polyubiquitin modification-dependent protein binding activity; and ubiquitin protein ligase activity. Predicted to be involved in protein linear polyubiquitination. Predicted to act upstream of or within cellular protein modification process and protein transport. Predicted to be part of LUBAC complex. Orthologous to human RNF31 (ring finger protein 31).

Ensembl:

ensembl_id ENSDARG00000078267

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032344 True 368 processed_transcript 0.47 3 26714098 26715998

Neighbor

gene id symbol gene type direction distance location
XLOC_016421 dre-mir-124-1 coding downstream 68700 26645317 ~ 26645398 (-)
XLOC_016420 u2surp coding downstream 71154 26623377 ~ 26642944 (-)
XLOC_016419 tmem59 coding downstream 93196 26612574 ~ 26620902 (-)
XLOC_016418 yipf1 coding downstream 109780 26598801 ~ 26604318 (-)
XLOC_016417 zgc:113691 coding downstream 117304 26591968 ~ 26596794 (-)
XLOC_016424 BX511023.2 coding upstream 323690 27039688 ~ 27039804 (-)
XLOC_016425 BX649522.2 coding upstream 517668 27233666 ~ 27233781 (-)
XLOC_016426 dsela coding upstream 595865 27311863 ~ 27319914 (-)
XLOC_016427 tmx3a coding upstream 602176 27318174 ~ 27330181 (-)
XLOC_016428 toe1 coding upstream 663863 27379861 ~ 27385934 (-)
XLOC_016409 CT027702.1 non-coding downstream 277985 26434936 ~ 26436113 (-)
XLOC_016408 NA non-coding downstream 426266 26286460 ~ 26287832 (-)
XLOC_016407 NA non-coding downstream 440766 26192709 ~ 26273332 (-)
XLOC_016406 CR392012.3 non-coding downstream 628819 26085162 ~ 26085279 (-)
XLOC_016429 NA non-coding upstream 672568 27388566 ~ 27390098 (-)
XLOC_016430 NA non-coding upstream 747387 27463385 ~ 27464441 (-)
XLOC_016432 NA non-coding upstream 768440 27484438 ~ 27496957 (-)

Expression


Co-expression Network