XLOC_016419 (tmem59)


Basic Information

Item Value
gene id XLOC_016419
gene name tmem59
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 26612574 ~ 26620902 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032335
GCGCAGTGTGACAATCCAGGAAGCGCGTTCGAGTCGATCTCGCGACACTTCCGCAGATACACAAACAAGGAAGAGTCGTTTAGTCGATGTTTGCTAAATCGCAAAAATGAGTGCAATAAAGTCCTACGGGATTTTGATGAGTTTCTGCTGCATCCTTACAGCCATATCTGCATCTGCCGACGTCTTCGATGGTGTTTTGGGAAACACTGTGTCTTGTCATAAAACATGTCAGATGACTTACAGTTTGCACACTTATCCGCGGGAGGAGGCGCTGTACGCCTGTCAGAGAGGATGTCGCCTCTTCTCCATCTGCCAGTTTGTGGGTGACAGCAAAGATCTCAACGAAACCAGATCCGAGTGCGAGTCAGCCTGTCGTGAAGCCTACAGCCAGTCAGACGAGCAGTACGCCTGCAATCTAGGATGCCAGAATCAACAGCCATTTGCAGAACAAAGAATGGAGCAGTTGACGATGATGATGCCCAAAATCCATCTGCTGTACCCGCTGACTTTGGTCAGGGGTTTCTGGGAGGATATGATGAGCCAAGCCCACAGCTTCATCACCTCATCCTGGACATTTTACCTGCAGGCGGATGATGGCAAAGTAGTCGTTTTCCAGTCTGAGCCGCAAGTCCAGTATATCTCTCAGTTTGAGTTCCAGAGAGACGAGACAGAGGAGCCACAGAACACTTTTATAGATGAGGGAGCGAAAAACCCCATTTATAAAGACTACCCTCGGAGCTTCATTcaggagagagacagagacatgTTCATGGACAGAAGTGGCTCTGAGGACGACTGCAATCTCTTCGGCTGTCTCTCAAGAAACCCGTGGCTGCCCGGCTGGATCTTGACCACCACTCTGATTCTGTCTGTGCTGGTTCTGATCTGGATCTGTTGTGCCACAGTGTCCACTGCTGCAGAGCAATACGTCCCTGCTGAGAAGCTGAGCATATATGGAGACATGGAGTACATGAAGGAGCAGAAGCTGAGCCCGTATCTGCCGTCGTCTCTGGTCATCATCAGATCTCCTGGCTTTGAGGAGCAGCAAGCAGGACCTCTCCCTTCAAAGGTCAATCTGAATCAGTCTAGCATTTAACTAGTCCAACATCCAAAGAAACTGGAGGCTCCTGGTACATGTTTGCTACTTTTCCTGTCaaagttgtgatttttttttttgctttaatatgGGTATATGGGGAATATATTTTATTGGCGTTTTGGCACTTTAAAAGCATTACCTATCAGACGGAAAGCTCGGTAGGATCTGTTTTTCCTGTTTACTACACATTTGTAGAGATGAAGACTTTTTGGTTTCCTTTATTATCACTTCTTGAGTGTTCTCAGTGTGATCAGTAACAGCTTGTGATTTAAGGTTCAAGATGTGTTGCACAAtgaaaaacattaacattttgatTTATGCTATAGTTGCAGGGAATGCAAATTGTCATAGAAACAGGGATAGGGAAGTCAGTAATAGGCAATGTGATATTTTGCAACCTCTCAGATTTGTCATCTTGATATTGTTAATAAACAAACCTACTGAAAACCAT
>TCONS_00032336
CGCAAAAATGAGTGCAATAAAGTCCTACGGGATTTTGATGAGTTTCTGCTGCATCCTTACAGCCATATCTGCATCTGCCGACGTCTTCGATGGTGTTTTGGGAAACACTGTGTCTTGTCATAAAACATGTCAGATGACTTACAGTTTGCACACTTATCCGCGGGAGGAGGCGCTGTACGCCTGTCAGAGAGGATGTCGCCTCTTCTCCATCTGCCAGTTTGTGGGTGACAGCAAAGATCTCAACGAAACCAGATCCGAGTGCGAGTCAGCCTGTCGTGAAGCCTACAGCCAGTCAGACGAGCAGTACGCCTGCAATCTAGGATGCCAGAATCAACAGCCATTTGCAGAACAAAGAATGGAGCAGTTGACGATGATGATGCCCAAAATCCATCTGCTGTACCCGCTGACTTTGGTCAGGGGTTTCTGGGAGGATATGATGAGCCAAGCCCACAGCTTCATCACCTCATCCTGGACATTTTACCTGCAGGCGGATGATGGCAAAGTAGTCGTTTTCCAGTCTGAGCCGCAAGTCCAGTATATCTCTCAGTTTGAGTTCCAGAGAGACGAGACAGAGGAGCCACAGAACACTTTTATAGATGAGGGAGCGAAAAACCCCATTTATAAAGACTACCCTCGGAGCTTCATTcaggagagagacagagacatgTTCATGGACAGAAGTGGCTCTGAGGACGACTGCAATCTCTTCGGCTGTCTCTCAAGCAGAAACCCGTGGCTGCCCGGCTGGATCTTGACCACCACTCTGATTCTGTCTGTGCTGGTTCTGATCTGGATCTGTTGTGCCACAGTGTCCACTGCTGCAGAGCAATACGTCCCTGCTGAGAAGCTGAGCATATATGGAGACATGGAGTACATGAAGGAGCAGAAGCTGAGCCCGTATCTGCCGTCGTCTCTGGTCATCATCAGATCTCCTGGCTTTGAGGAGCAGCAAGCAGGACCTCTCCCTTCAAAGGTCAATCTGAATCAGTCTAGCATTTAACTAGTCCAACATCCAAAGAAACTGGAGGCTCCTGGTACATGTTTGCTACTTTTCCTGTCaaagttgtgatttttttttttgctttaatatgGGTATATGGGGAATATATTTTATTGGCGTTTTGGCACTTTAAAAGCATTACCTATCAGACGGAAAGCTCGGTAGGATCTGTTTTTCCTGTTTACTACACATTTGTAGAGATGAAGACTTTTTGGTTTCCTTTATTATCACTTCTTGAGTGTTCTCAGTGTGATCAGTAACAGCTTGTGATTTAAGGTTCAAGATGTGTTGCACAAtgaaaaacattaacattttgatTTATGCTATAGTTGCAGGGAATGCAAATTGTCATAGAAACAGGGATAGGGAAGTCAGTAATAGGCAATGTGATATTTTGCAACCTCTCAGATTTGTCATCTTGATATTGTTAATAAACAAACCTACTGAAAACC
>TCONS_00032337
AAGGAAGAGTCGTTTAGTCGATGTTTGCTAAATCGCAAAAATGAGTGCAATAAAGTCCTACGGGATTTTGATGAGTTTCTGCTGCATCCTTACAGCCATATCTGCATCTGCCGACGTCTTCGATGGTGTTTTGGGAAACACTGTGTCTTGTCATAAAACATGTCAGATGACTTACAGTTTGCACACTTATCCGCGGGAGGAGGCGCTGTACGCCTGTCAGAGAGGATGTCGCCTCTTCTCCATCTGCCAGTTTGTGGGTGACAGCAAAGATCTCAACGAAACCAGATCCGAGTGCGAGTCAGCCTGTCGTGAAGCCTACAGCCAGTCAGACGAGCAGTACGCCTGCAATCTAGGATGCCAGAATCAACAGCCATTTGCAGAACAAAGAATGGAGCAGGTGTGAAAAACCTTTGTCAAAAATTGCCTTTGCGTGATCTG

Function

symbol description
tmem59 Predicted to be involved in positive regulation of autophagy. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in late endosome and lysosome. Orthologous to human TMEM59 (transmembrane protein 59).

GO:

id name namespace
GO:0010508 positive regulation of autophagy biological_process
GO:0005764 lysosome cellular_component
GO:0005770 late endosome cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-397 Predicted to be involved in positive regulation of autophagy. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in late endosome and lysosome. Orthologous to human TMEM59 (transmembrane protein 59).

Ensembl:

ensembl_id ENSDARG00000019033

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032335 False 1550 mRNA 0.46 8 26612574 26620902
TCONS_00032336 False 1452 mRNA 0.45 8 26612576 26620803
TCONS_00032337 True 438 lncRNA 0.47 3 26619904 26620836

Neighbor

gene id symbol gene type direction distance location
XLOC_016418 yipf1 coding downstream 8256 26598801 ~ 26604318 (-)
XLOC_016417 zgc:113691 coding downstream 15780 26591968 ~ 26596794 (-)
XLOC_016416 ndc1 coding downstream 21946 26576853 ~ 26590628 (-)
XLOC_016415 glis1a coding downstream 48596 26529447 ~ 26563978 (-)
XLOC_016414 si:ch211-106k21.5 coding downstream 84844 26518813 ~ 26527730 (-)
XLOC_016420 u2surp coding upstream 2475 26623377 ~ 26642944 (-)
XLOC_016421 dre-mir-124-1 coding upstream 24415 26645317 ~ 26645398 (-)
XLOC_016422 si:dkey-181m9.8 coding upstream 71456 26692358 ~ 26720854 (-)
XLOC_016423 si:dkey-181m9.8 coding upstream 93196 26714098 ~ 26715998 (-)
XLOC_016424 BX511023.2 coding upstream 418786 27039688 ~ 27039804 (-)
XLOC_016409 CT027702.1 non-coding downstream 176461 26434936 ~ 26436113 (-)
XLOC_016408 NA non-coding downstream 324742 26286460 ~ 26287832 (-)
XLOC_016407 NA non-coding downstream 339242 26192709 ~ 26273332 (-)
XLOC_016406 CR392012.3 non-coding downstream 527295 26085162 ~ 26085279 (-)
XLOC_016405 CR392012.2 non-coding downstream 554662 26054113 ~ 26057912 (-)
XLOC_016425 BX649522.2 non-coding upstream 612764 27233666 ~ 27233781 (-)
XLOC_016429 NA non-coding upstream 767664 27388566 ~ 27390098 (-)
XLOC_016430 NA non-coding upstream 842483 27463385 ~ 27464441 (-)

Expression


Co-expression Network