XLOC_016409 (CT027702.1)


Basic Information

Item Value
gene id XLOC_016409
gene name CT027702.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 26434936 ~ 26436113 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032314
cataggtttacagctcaacctctaaagtcccatatctggctgaggagactgtggatcatccagaacatcaccagtggaaaaaaaaggtgtgaatgcatcctcaaagcccctaagtgagggagtacatggatgctgggcatgatgaagcgcaaaccttgatgtgcaacaccaccttatgaatctacagttgtttcattaacatttagcagactcttttgtctaaagtgacttacaattgaggacacattcaggaaatcaacaagaagaggcaatgcatccaagatgtgctaattataaaaaaaaaaaaaaaaaaaaaaattaagaatgcttctacatgtggtttgtcaagcccacacacctgtttgaagcagacttcatgcacaatgttttgttttttgttttttagatatagggagtggttgtaagaaagtgtctggtgcaaatgtacATAAATGAtgcaagtgtcagagagatgaatgtgtgtagctattgcatgttctgtgatggttggtctaatttatggtgtagtgctgatcgtgttactttgctttaaaatgttaatctttctttgaacaactgaagtgttatctgctttttcagtgtaaagaaagtacagtatagtttacaaaagaagacttaatttttccaagtatatttttgataaatcatttgaaggcagaatattatttttgaatgttttttgtaatatatgaaaagtattattttgaaaagtgtattttatgatgcttttgtaagcatatttttgtaaatcatttattgtttttaatttacttcatacttgtattactattattttaatagtattaatattttaacttattgtaataagtgaagatacagattaagacagtatttggattttgataatcattttattgctggaaaatatgtaaaactgtaaaaatgctattgaataaactcaatgaaa
>TCONS_00032315
cataggtttacagctcaacctctaaagtcccatatctggctgaggagactgtggatcatccagtggaaaaaaaaggtgtgaatgcatcctcaaagcccctaagtgagggagtacatggatgctgggcatgatgaagcgcaaaccttgatgtgcaacaccaccttatgaatctacagttgtttcattaacatttagcagactcttttgtctaaagtgacttacaattgaggacacattcaggaaatcaacaagaagaggcaatgcatccaagatgtgctaattataaaaaaaaaaaaaaaaaaaaaaattaagaatgcttctacatgtggtttgtcaagcccacacacctgtttgaagcagacttcatgcacaatgttttgttttttgttttttagatatagggagtggttgtaagaaagtgtctggtgcaaatgtacATAAATGAtgcaagtgtcagagagatgaatgtgtgtagctattgcatgttctgtgatggttggtctaatttatggtgtagtgctgatcgtgttactttgctttaaaatgttaatctttctttgaacaactgaagtgttatctgctttttcagtgtaaagaaagtacagtatagtttacaaaagaagacttaatttttccaagtatatttttgataaatcatttgaaggcagaatattatttttgaatgttttttgtaatatatgaaaagtattattttgaaaagtgtattttatgatgcttttgtaagcatatttttgtaaatcatttattgtttttaatttacttcatacttgtattactattattttaatagtattaatattttaacttatt

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000092348

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032314 False 949 processed_transcript 0.31 3 26434936 26436113
TCONS_00032315 True 831 processed_transcript 0.32 3 26435043 26436113

Neighbor

gene id symbol gene type direction distance location
XLOC_016408 NA coding downstream 147104 26286460 ~ 26287832 (-)
XLOC_016407 NA coding downstream 161604 26192709 ~ 26273332 (-)
XLOC_016406 CR392012.3 coding downstream 349657 26085162 ~ 26085279 (-)
XLOC_016405 CR392012.2 coding downstream 377024 26054113 ~ 26057912 (-)
XLOC_016404 cldn11a coding downstream 433763 25997426 ~ 26001173 (-)
XLOC_016410 rabggtb coding upstream 27001 26463114 ~ 26469093 (-)
XLOC_016411 acadm coding upstream 33957 26470070 ~ 26476150 (-)
XLOC_016412 BX569796.4 coding upstream 63389 26499502 ~ 26499842 (-)
XLOC_016413 best4 coding upstream 68856 26504969 ~ 26509057 (-)
XLOC_016414 si:ch211-106k21.5 coding upstream 82700 26518813 ~ 26527730 (-)
XLOC_016403 NA non-coding downstream 576430 25852679 ~ 25858506 (-)
XLOC_016421 dre-mir-124-1 non-coding upstream 209204 26645317 ~ 26645398 (-)
XLOC_016424 BX511023.2 non-coding upstream 603575 27039688 ~ 27039804 (-)
XLOC_016425 BX649522.2 non-coding upstream 797553 27233666 ~ 27233781 (-)
XLOC_016429 NA non-coding upstream 952453 27388566 ~ 27390098 (-)
XLOC_016430 NA non-coding upstream 1027272 27463385 ~ 27464441 (-)

Expression


Co-expression Network