XLOC_016413 (best4)


Basic Information

Item Value
gene id XLOC_016413
gene name best4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 26504969 ~ 26509057 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032324
ATGACGGTCTCCTACACGCTCAAGGTTGCCAATGCTAAGTTTGGAGGTTTCTCGAAGCTGCTCTTCAGATGGAAAGGAAGCATTTACAAGCTTCTCTACAGAGAATTTCTGGTTTTCTGCTTACTGTACACCTTTATCAGTATTCTGTACAGGTGTGTCCTTAATAACAATCAACAGGAGATATTCGCGAGACTAGCACGTCATTGTAACAAGTTTGCCAAACTCATCCCCATGTCATTTGTTCTTGGGTTCTACGTCACTCAAGCATTTCAGCGCTGGTGGGGTCAGTACACCAGCTTTCCCCTGCCTGATAACCTGATGATGGTGGTCTCTGGAAACGTCCATGGTACAGATGAAAGAGGTCGTCTGTTGAGGAGAACTCTGATGAGATATGCTAACCTGTCATCTGTCCTCATACTGCGTTCCATCAGCACACGAGTGCGCAAGAGGTTTACAACTCTGGAGGACATTGTGGAGGCAGGATTCATGACCACAGATGAGCTCAGGAAACTAAACCATCTGTACTCAGACTTCAACAAATACTGGATGCCGCTTGCATGGTTTGCCAACCTGGCGTCTCAGGCCAGAAAAGAAGGGCGTGTGAAAGATGATATAGCATTGCGTCTGCTAATGGATGAGCTGAATAACTATAGATCAAAATGCAGCATGCTCTTCCACTATGACTGGATCAGCATTCCCTTGGTGTACACACAGGTGGTGACTGTGGCCGTGTACTCCTTCTTTACATTTAGTCTTATTGGGAGGCAGTTTGTGAAGCCTGCATCTTCTGAAGAACACCTTGACCTGTACATCCCCATTTTCACTTTACTGGAGTTCTTCTTTTATGCTGGATGGTTAAAGGTAGGGGAACTTATCATCAACCCGTTtggagaagatgatgatgattttgAAACCAACCAACTCATAGATCGAAACATTCAGGTTTCTATGCTAGCCGTAGATGACATGCACCAGAATCTTCCTCCTCTTGAGAAGGACAAATACTGGGTGGATAAAGGTCCTTCATATCCTTCGGCTTCTATGAAGCCTGTTTTCATGGGTTCTACACATGACATGAG
>TCONS_00032325
ATGACGGTCTCCTACACGCTCAAGGTTGCCAATGCTAAGTTTGGAGGTTTCTCGAAGCTGCTCTTCAGATGGAAAGGAAGCATTTACAAGCTTCTCTACAGAGAATTTCTGGTTTTCTGCTTACTGTACACCTTTATCAGTATTCTGTACAGGTGTGTCCTTAATAACAATCAACAGGAGATATTCGCGAGACTAGCACGTCATTGTAACAAGTTTGCCAAACTCATCCCCATGTCATTTGTTCTTGGGTTCTACGTCACTCAAGCATTTCAGCGCTGGTGGGGTCAGTACACCAGCTTTCCCCTGCCTGATAACCTGATGATGGTGGTCTCTGGAAACGTCCATGGTACAGATGAAAGAGGTCGTCTGTTGAGGAGAACTCTGATGAGATATGCTAACCTGTCATCTGTCCTCATACTGCGTTCCATCAGCACACGAGTGCGCAAGAGGTTTACAACTCTGGAGGACATTGTGGAGGCAGGATTCATGACCACAGATGAGCTCAGGAAACTAAACCATCTGTACTCAGACTTCAACAAATACTGGATGCCGCTTGCATGGTTTGCCAACCTGGCGTCTCAGGCCAGAAAAGAAGGGCGTGTGAAAGATGATATAGCATTGCGTCTGCTAATGGATGAGCTGAATAACTATAGATCAAAATGCAGCATGCTCTTCCACTATGACTGGATCAGCATTCCCTTGGTGTACACACAGGTGGTGACTGTGGCCGTGTACTCCTTCTTTACATTTAGTCTTATTGGGAGGCAGTTTGTGAAGCCTGCATCTTCTGAAGAACACCTTGACCTGTACATCCCCATTTTCACTTTACTGGAGTTCTTCTTTTATGCTGGATGGTTAAAGGTAGGGGAACTTATCATCAACCCGTTtggagaagatgatgatgattttgAAACCAACCAACTCATAGATCGAAACATTCAGGTTTGCAGATTGAAAAATAGCATCATCATTTCAAGGAATGCAAATGTTTCATGA

Function

symbol description
best4 Predicted to enable chloride channel activity. Predicted to act upstream of or within chloride transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of chloride channel complex. Orthologous to human BEST4 (bestrophin 4).

GO:

id name namespace
GO:0006811 ion transport biological_process
GO:0006821 chloride transport biological_process
GO:0034707 chloride channel complex cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005254 chloride channel activity molecular_function

KEGG:

id description
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-070912-6 Predicted to enable chloride channel activity. Predicted to act upstream of or within chloride transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of chloride channel complex. Orthologous to human BEST4 (bestrophin 4).

Ensembl:

ensembl_id ENSDARG00000078455

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032324 False 1079 mRNA 0.45 8 26504969 26509057
TCONS_00032325 True 996 mRNA 0.44 7 26505128 26509057

Neighbor

gene id symbol gene type direction distance location
XLOC_016412 BX569796.4 coding downstream 5127 26499502 ~ 26499842 (-)
XLOC_016411 acadm coding downstream 28819 26470070 ~ 26476150 (-)
XLOC_016410 rabggtb coding downstream 35876 26463114 ~ 26469093 (-)
XLOC_016409 CT027702.1 coding downstream 68856 26434936 ~ 26436113 (-)
XLOC_016408 NA coding downstream 217137 26286460 ~ 26287832 (-)
XLOC_016414 si:ch211-106k21.5 coding upstream 9756 26518813 ~ 26527730 (-)
XLOC_016415 glis1a coding upstream 20390 26529447 ~ 26563978 (-)
XLOC_016416 ndc1 coding upstream 67796 26576853 ~ 26590628 (-)
XLOC_016417 zgc:113691 coding upstream 82911 26591968 ~ 26596794 (-)
XLOC_016418 yipf1 coding upstream 89744 26598801 ~ 26604318 (-)
XLOC_016407 NA non-coding downstream 231637 26192709 ~ 26273332 (-)
XLOC_016406 CR392012.3 non-coding downstream 419690 26085162 ~ 26085279 (-)
XLOC_016405 CR392012.2 non-coding downstream 447057 26054113 ~ 26057912 (-)
XLOC_016421 dre-mir-124-1 non-coding upstream 136260 26645317 ~ 26645398 (-)
XLOC_016424 BX511023.2 non-coding upstream 530631 27039688 ~ 27039804 (-)
XLOC_016425 BX649522.2 non-coding upstream 724609 27233666 ~ 27233781 (-)
XLOC_016429 NA non-coding upstream 879509 27388566 ~ 27390098 (-)
XLOC_016430 NA non-coding upstream 954328 27463385 ~ 27464441 (-)

Expression


Co-expression Network