XLOC_016408


Basic Information

Item Value
gene id XLOC_016408
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 26286460 ~ 26287832 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033839
CCAGAAATGCGTTgaggctggaaggtcatccgctgcgtaaaaatgtgctggataagttggcggttcattccgctgtggcgaccccggataaataaagggactaagctgacaagaattTGAACAAGGTTTTGTGTGAAAGTCAGATATCCAGGAACCATCATGAGGGCACAAGGAACTGCTATGGGGTCCTTGAAAAAGGGAGAAAATGTCAACAGTTCAGACAAAATCACATTTGAGGATTTTAAAAAGCCGAACAAGAACAAAAAGGTATGAAAAGAATGTCCCTTTAAGCAATTACAACAGAAGTATAAAAAAAGATTCAGTTTCCCCTCACATCATGAGACGGGGCGCAGACAGTACTGTTTTGAAGGAAAGTGGGAGTTTGTCTTTCTGGGTTTACGTTCTTGAGAGGCTGTGATTGTCAAGATCTTTGACCTTGTATATCCTGATAGGCCAGTGCTATGTAGTAAGCTTCTGCACATCCAACTCAAAGTCCTTATTGCCAATCTCAGCATTACAACTCTGTCATAACCAGGAAGACACTTGGCTTCAATTTACCCTactggttgttgtttttttttccagttggtcgaccagcctggttttaaaggggttttggctatTGCCAGGTTAGTTTTATAATAATTCCTTTTTTTCAGCTTAGATAggctggtcaaactggttttGGCTAGTCTCCCAGCTTGGATAGTCTTGTCAAGCTAGTTTTCATCTGGTCTCTcagcctgaccagttaagacAGACTGTAAATGGCTAAAACCAGACCAGCCATGAAATGTCCAAAACCTCTTTAAAAttaggctggtcaaccagcagGTTAGACCTGTCTGAAGCGATAAAAACACATCTTGTACATGAGGCAGTTGAGCAGGACAGGAGAACCCTCAAAGCCCACATGAAACTCCCTGGTGGGTGTGTAATAATCATGTCCCCTTATGTGCGTCCCTGTGTCTGTGCTTCCACTAATACGCACATCCACAGGAATTTATTAATGTGATCAGATAAATATCTGGTCAATCCACCAAAGATTACCAAGACGTAGCTCACATTCAGCTCTTGCATAATCTCATAAACCTTCCTTTCTTTACTCTAGA

Function

GO:

id name namespace
GO:0046329 negative regulation of JNK cascade biological_process
GO:0015349 thyroid hormone transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033839 True 1112 lncRNA 0.42 2 26286460 26287832

Neighbor

gene id symbol gene type direction distance location
XLOC_016407 NA coding downstream 13128 26192709 ~ 26273332 (-)
XLOC_016406 CR392012.3 coding downstream 201181 26085162 ~ 26085279 (-)
XLOC_016405 CR392012.2 coding downstream 228548 26054113 ~ 26057912 (-)
XLOC_016404 cldn11a coding downstream 285287 25997426 ~ 26001173 (-)
XLOC_016403 NA coding downstream 427954 25852679 ~ 25858506 (-)
XLOC_016409 CT027702.1 coding upstream 147104 26434936 ~ 26436113 (-)
XLOC_016410 rabggtb coding upstream 175282 26463114 ~ 26469093 (-)
XLOC_016411 acadm coding upstream 182238 26470070 ~ 26476150 (-)
XLOC_016412 BX569796.4 coding upstream 211670 26499502 ~ 26499842 (-)
XLOC_016413 best4 coding upstream 217137 26504969 ~ 26509057 (-)
XLOC_016402 NA non-coding downstream 469628 25782699 ~ 25816832 (-)
XLOC_016421 dre-mir-124-1 non-coding upstream 357485 26645317 ~ 26645398 (-)
XLOC_016424 BX511023.2 non-coding upstream 751856 27039688 ~ 27039804 (-)
XLOC_016425 BX649522.2 non-coding upstream 945834 27233666 ~ 27233781 (-)
XLOC_016429 NA non-coding upstream 1100734 27388566 ~ 27390098 (-)

Expression


Co-expression Network