XLOC_016402


Basic Information

Item Value
gene id XLOC_016402
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 25782699 ~ 25816832 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033836
GTGTGCTGGGATCAGACCTTCTGCCCTGCTAATTATGTTTTAGCGCTGTTTATAGAGAGCTTCAGGAAAACCATCTTCCTGTAGATTATTATTTACTGCTTTGAATATGATCGATATGTCttatatcattttaatatattaatgatgTTTTGTGTCGGcagcactgatttttttttaaacaatgttaaaaGATTTTGTTTGTATGTGCTTGAACACCAAGAGTTAATGTATTACATCTATCAGAGCAAAGTTCTCAGAGATACTGCAGATTTCACGAGCTCTGCGTAAACAGAAGGAGGGACACCAACACCAGTCAAAAAAgATATCATGTTGCTCCGACATACACATCCAGTGTCTACAAAACATGCAACCAGTGAAGGGAAGCGTGTGGCTACTGTGGATTTCACTCAGGAGTTCACCACATGCCAccttgtgagaaaaaaaaagaggagcTCCATCACCAAAGGGCCCAGAAGCACCCAGCAATGGGCCGGACTGATTGCTACAGCTTACACAAAAAAAGAGGTCTTCCAAGTGGGACAGTAGCCATCTGATGGGGCTCAGAATCAGAACCAGGGTTAAACATGAAAAAGGGGCTTTTATGATGTCACTTATAAGATGGAAAAGCGAGTGGCTTAACATATGCATGAACAAATAGATAACGTGAGTTATATGGCTAACTGAATGATTTATGTACATCTCAGgtttcagtaaataaaaaaaattgcatattgGTGTAACCTTTTATTTTGTGGGTTAAATAAATCTTTTCAAAATTACAATTCGGGATATGCTATTTACAACTATTTACAATGAGTGCAGACCACTTTATTTGGCGGCTCTGATTGTCATAAAGTCGGGGGATGACGGGGAGCCAATGGGAGACAAATCAGGACTGATCTGAGAGGAGCGACGGCTCCCCGGGGATGGTGATCTAGAGGAGACTGGGCTTCCTCCTCTAGGTGAGCCTCGAGGAGACAGACCCATCCAGCGCAACAAAGACCAGAGTGGCCTAGCTATTTCAGAATTTTTAGAACCCCGACGTTGCAAATTGCTGATGCGTTCACAAGATTTAGCACGCCAGATGGGAGAATCTAAACGTGATGAAGACAAGTCCTGAGCAGAAGAGCATCGATTCATATGAACCGGTTCATCTGAACCAAACTTTTTAAGAGGCACCTCCCACTCCCATTGCGGCACCATAAGGAGGTTCTTGCCTGGGATAGAGTGTGAACGCTTCTGTTTCGGCATAGCTTCTCTTAAGGAATACTCTGGGCTAGACTGGGAAAGCATGTCTACCTTTTCACTTTCAGGGGACAGTTCATTGTCTGTTTCTACTTGAAATACAGGCCTGCTAGATTTTACAACTATGGGTGTGATCATTCGAGTTACCCGCTTATAAGGAGGACGGGAAAAGCCTGGGCGAGGTCCCATACtaattttttttgcactgtaTTGGGGGGGTGGTGAAATCGATTGTCGCTGTATCAGGTTCTGCTTCTGCGGCTTTAAAGGCTGCATGACACTTTGATTAATTGAGGGATTCAGTATAGCGCGGCCTATGGGGATCCCTAGGTTGTCCAACTTATAGTAGAGGGGTGTGGACTGCTTGCGGTTGCTGGGTTGGATCTTTATCTGGGGCGGTCCATGGATCTGAAACAGTGAGTCAAGAAAATTTTGTTAAACATAGTAAAGTTGACAAAAAGTCAAAAACACCAGTGCTGCGTCTTAAtttgcatactatccatcctaaatagtatttgaaaataaaatttgtatgtcccaaatcatagtatgttgaaaagagtaagCCAAAGTTTTCCGATTTGGTTTACtatttccagtaaaaaaaaatttaagtcaagaagcgtccatactctaaccgctgatCCTGCCGGCAATACATTGCATGTTGGACGGGAACTCAATTTGAACTAATGTGGGTGAAAAGTGTAAAcgaactacaaacatgatggagaccaaccgtcaagtagtaggcttcggtaaagatgtttgtatgactgttaattaatatctagccaactggaaaatatttaaattgtgttttctgtgttataacaacaatactgaacttattgAAAGaagtgtttggacattaacgtctgaatgcataattatccaaagacctaaggagatttctctgcatgaaagacccgtgaatgggagattaacctgctgctgcttctccagtaAGGTAGGGAGTTacatatgacagaaatgtggatgatgtgtagATAATTGACAAGGCTCGCAATTAAGCAACACAAATGGTCTGTTAATAAGGAAGTATTATGTCCTAAAGCTTGCGCTCTTtaattacacactcaaaagtatatatttttccttcacaaaaagtacatacttttagggcataGTATAAGCAAATTGGGACACAGCACTGGACAAAGGACACAATACAAGATCATTGCCATTTGCTGTTGCGAAAAAGCCTTGCAAAGTTGTTTGTTTGTAGTAAAACACAAAATTTTTGATACACTGTTGAACA
>TCONS_00032300
GTCACTGTGAGAACATGCCGAACATGTGTGCTGGGATCAGACCTTCTGCCCTGCTAATTATGTTTTAGCGCTGTTTATAGAGAGCTTCAGGAAAACCATCTTCCTGTAGATTATTATTTACTGCTTTGAATATGATCGATATGTCttatatcattttaatatattaatgatgTTTTGTGTCGGcagcactgatttttttttaaacaatgttaaaaGATTTTGTTTGTATGTGCTTGAACACCAAGAGTTAATGTATTACATCTATCAGAGCAAAGTTCTCAGAGATACTGCAGATTTCACGAGCTCTGCGTAAACAGAAGGAGGGACACCAACACCAGTCAAAAAAgATATCATGTTGCTCCGACATACACATCCAGTGTCTACAAAACATGCAACCAGTGAAGGGAAGCGTGTGGCTACTGTGGATTTCACTCAGACCAAAGTGTCAATGTACCGTGCGCTCACAGATGCAATGCTGACGAGGAGAAAGACTCCACAGTGTTGCTTGTGCAGGAGCTTCACCAGTTCATCAGAGAGTTCCTATTCAGGGTCATGAAGAACACTTGACTGCTGCCACCTGACCGCACTGAGGCGAAGAACACCTGCGGAATTAAAAAAGATGTCAAAAAATG
>TCONS_00032301
CTGGGATCAGACCTTCTGCCCTGCTAATTATGTTTTAGCGCTGTTTATAGAGAGCTTCAGGAAAACCATCTTCCTGTAGATTATTATTTACTGCTTTGAATATGATCGATATGTCttatatcattttaatatattaatgatgTTTTGTGTCGGcagcactgatttttttttaaacaatgttaaaaGATTTTGTTTGTATGTGCTTGAACACCAAGAGTTAATGTATTACATCTATCAGAGCAAAGTTCTCAGAGATACTGCAGATTTCACGAGCTCTGCGTAAACAGAAGGAGGGACACCAACACCAGTCAAAAAAgATATCATGTTGCTCCGACATACACATCCAGTGTCTACAAAACATGCAACCAGTGAAGGGAAGCGTGTGGCTACTGTGGATTTCACTCAGGTAACGTTCATGTTCCTGTTTCAAACATTCCAAAAAAGGACCAAAAAagacgttaaaaaaaaaaaaaacatggttcgCAACTTAAAGATCCAATCATAATCAGCTTTCCGACCTCAAAGCTATAAAACAAACTGAACCATACTTCGAAATACAGTACTTTGgataaatgtacagtatatggatCTTGTCGACAATATACAAATGAGCaccagtgtttgtttgtttcttttaagtACGTCAGAAACCGgacacaaaaataaaatcaacggGCATCACGGATACTTGTGTAAGTGGCAGAAATGTTTGCCAATATCTTAAAGTGAAACATCAAGAGACTAAAGCTTGGTCTTAGCCTGAGTGCTTTGCTAATGTTATCCTCACGTTTTAAATACCGCCCATTTCTTTACAATCATGCAATTGACTAAAAACTCAGCAGGAAACTGAAAGCCAATAGGGGTAACCAGGGATTGGAAACGGAAACGGGGAGGATCCTAAAAAGGACAggctttttcaactttttttaccAGAGGCCACAAATAAGGTCTAAAACCGAGTTCAAGTTAATCGGCGCCCTCTTTTGGGAGCTGCGCGCCACTGCAGGTGACGTCAGATACAG

Function

GO:

id name namespace
GO:0016999 antibiotic metabolic process biological_process
GO:0017144 drug metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000094803

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033836 False 2527 lncRNA 0.41 3 25782699 25816807
TCONS_00032300 False 632 lncRNA 0.41 3 25814552 25816832
TCONS_00032301 True 1022 lncRNA 0.39 2 25814845 25816802

Neighbor

gene id symbol gene type direction distance location
XLOC_016401 ghsra coding downstream 229067 25551457 ~ 25553632 (-)
XLOC_016400 NA coding downstream 608679 25165250 ~ 25174020 (-)
XLOC_016399 si:dkey-223d7.6 coding downstream 623390 25158342 ~ 25159309 (-)
XLOC_016398 CR786576.2 coding downstream 626741 25155842 ~ 25155958 (-)
XLOC_016397 nceh1a coding downstream 639326 25131349 ~ 25143373 (-)
XLOC_016403 NA coding upstream 35847 25852679 ~ 25858506 (-)
XLOC_016404 cldn11a coding upstream 180594 25997426 ~ 26001173 (-)
XLOC_016405 CR392012.2 coding upstream 237281 26054113 ~ 26057912 (-)
XLOC_016406 CR392012.3 coding upstream 268330 26085162 ~ 26085279 (-)
XLOC_016407 NA coding upstream 375877 26192709 ~ 26273332 (-)
XLOC_016389 NA non-coding downstream 953490 24829004 ~ 24829209 (-)
XLOC_016388 NA non-coding downstream 1083535 24678696 ~ 24699164 (-)
XLOC_016386 NA non-coding downstream 1210005 24568889 ~ 24572694 (-)
XLOC_016408 NA non-coding upstream 469628 26286460 ~ 26287832 (-)

Expression


Co-expression Network