XLOC_016397 (nceh1a)


Basic Information

Item Value
gene id XLOC_016397
gene name nceh1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 25131349 ~ 25143373 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032294
CTGGCAGGACCCCAAGGACAAACCAGTTTGTTCAAAAACAAGATTGACCACCCCACGCAGGTTATTCAAGCTTGGGTTATAAGATTGGTATGTGTTCACACCTTTAGAAAAGTGACTCCCATCATTATTTGCAAGAAGTGTCAATAGAATGACATTTCAAATCTAAAATGAGTGGCAAAACAGCCTTAAACAACAGGAGATAAGTGCAGGTGAAATTTGATTTTCGTGATATTTTAGGTTTGAGAAGTTAAAGCTGCAGAGAGACCAGGGAGGAGAGGCATCACTTCATGATGAAGCTGCTTTGCGGTTTTACTCTGTTGTTAACAGTTGCTCTTGCCTATTACGTCTACATCCCATTGCCCAGGACAATCTCTGAGCCATGGAAACTGATGGTGCTGGATGCCACATTCAGGGGAGTTGTGAAGATGGGAGACATCGCTCACTCACTGGGTTTAAGTCATAGCGTCCATGTTATCAACTCTGCTATAGTTGGCTTTGAGAGTTTGGTGCCAATCACAAACCAGGAGATCCAGACTGAAGATGTCCTATTTGATGGAGTCCACGTGCGTGTGTATTATCCTCAGGGAGAGGAAGAAAAGCTGAGGAGAGCTGTCATGTTCATTCATGGAGGTGGATGGTCCTTGGGTGCTCCAAAGTTGGGGTCATATGACAGTCTCTGCAGGCAGATGTCAGCTGATCTGAATGCAGTAGTAGTGACGGTGGACTATCGGATGGCTCCTGATGTGCACTTTCCGGTGCAGTATGAGGAGTGTGTGCAGGCAGCTAAACACCTCCTGAAGCCAGAGGTGCTGAAGCAGTACTCAGTGGATCCTGAGCGAGTGGCCGTCTGCGGAGACAGTGCTGGAGGAAACCTGGCCGCTGCAGTGGCTCAGAGGATTGGAACAGAAAACAGTACCTCAGCAAAATTCAAGCTGCAGGTGTTGATTTACCCAGTCCTTCAGGCACTCGACTTCAACACAGCTTCCTATCAGCAGAACCATAATGTCCCCATCCTATACCGCAGACTAATGGCTCGTTTCTGGTTGGAGTACCTGGGCGCTGACCCTGAACTTGCACACTCTATTATGATGAACAACCACACAGCCCAAGACCAAAATCTGTTGTCCCAGAATCGTGCAAAGCTGGACTGGACCAATCTTCTACcaaaagaaataagaaaacattttaaacctgTTTTTCCAGTGACTGGATCTCCCAATATCTTAAGTGATGTTCCAGGTTTACTGGATTCCAGAGCCTCTCCGTTACTTGCGGAGGATGAGGTTTTGCGTATGGCGCCACGTGCTTATATTATGACTGGTGAGCATGATGTTTTGAGGGATGATGGGATGATGTACGCCCGCAGGTTGGAGCTGGCAGGCGTCTCTGTCACTAATGACCATTATCAAGATGGATTTCATGGCTGTGTAAGCTTTGCTTTCTGGCCCTGCTACTTCTCTGTGGGAGTGAATGCAGTGCAGAATTATATCGCTTGGCTTGACAAACATTTGTAGACCTATAGGAAGAGACGaatactttaaaatgtgcatattaGGGATTTACACATTGTGATGAATTCTTTCGCAACATGACATGATTTGTAACATTTAGTTAAGAATTAAGTATCTGATGTTTTACTGTATTAAAAGAAACTGCATTGTCATTTCCAAATACtaacacatttctgtttttttaactAAGGTACTAAAAACCAAATGAcaagaattttgttttaaataatactcTCTTTCTAACACCATTAATATACACAAATATGTGCACACACCCTTTACGGTAAGCAGAATGTTTTTGAAagtgtttaaattcaaatgatggCTTAATTGCTTTTGTGCTTGTCATTACTATCACCTAACATGTTAACAAATCATGTCATTTGTAACCATGCATTTCATAAACCTTTGTAACACTTTCACTCCAGACTTGATTTTACCATATGTCTATTGCAAAACACTGTGAATAAAGCAGGAATTTATTAATGCTTcagtgataaaaataaaattaaatattgtctagttttatcaaatattttatagctatatatatatatatatattatttagagCTTATAGCTCTACCAAATAAACAATGCAAcaaatgtgtattttgttttgAATGGTCTGGCATCTTCTTATTTAACTTGTGACTGTTGACATTTCTGCTAGTTGCTTAAGGTCATCAAGTCAGAATTTTTGTAAGGTTCCCAGAACAAAGTTAAAGAGAAAGGGGGACTGGGCTTTTGCCATTGTTGGCCCCAAATGCGGAATAGTCTACATCTTTTTATTAGGATAATCTCCACAGAACCCTTGTTCAATGGGGAAACCAAACCTTTACCTTTTAGAAAAGGCCTTTCAAACCCGAATCAT
>TCONS_00032295
CCCTGACAGCTGCAGAGAGACCAGGGAGGAGAGGCATCACTTCATGATGAAGCTGCTTTGCGGTTTTACTCTGTTGTTAACAGTTGCTCTTGCCTATTACGTCTACATCCCATTGCCCAGGACAATCTCTGAGCCATGGAAACTGATGGTGCTGGATGCCACATTCAGGGGAGTTGTGAAGATGGGAGACATCGCTCACTCACTGGGTTTAAGTCATAGCGTCCATGTTATCAACTCTGCTATAGTTGGCTTTGAGAGTTTGGTGCCAATCACAAACCAGGAGATCCAGACTGAAGATGTCCTATTTGATGGAGTCCACGTGCGTGTGTATTATCCTCAGGGAGAGGAAGAAAAGCTGAGGAGAGCTGTCATGTTCATTCATGGAGGTGGATGGTCCTTGGGTGCTCCAAAGTTGGGGTCATATGACAGTCTCTGCAGGCAGATGTCAGCTGATCTGAATGCAGTAGTAGTGACGGTGGACTATCGGATGGCTCCTGATGTGCACTTTCCGGTGCAGTATGAGGAGTGTGTGCAGGCAGCTAAACACCTCCTGAAGCCAGAGGTGCTGAAGCAGTACTCAGTGGATCCTGAGCGAGTGGCCGTCTGCGGAGACAGTGCTGGAGGAAACCTGGCCGCTGCAGTGGCTCAGAGGATTGGAACAGAAAACAGTACCTCAGCAAAATTCAAGCTGCAGGTGTTGATTTACCCAGTCCTTCAGGCACTCGACTTCAACACAGCTTCCTATCAGCAGAACCATAATGTCCCCATCCTATACCGCAGACTAATGGCTCGTTTCTGGTTGGAGTACCTGGGCGCTGACCCTGAACTTGCACACTCTATTATGATGAACAACCACACAGCCCAAGACCAAAATCTGTTGTCCCAGAATCGTGCAAAGCTGGACTGGACCAATCTTCTACcaaaagaaataagaaaacattttaaacctgTTTTTCCAGTGACTGGATCTCCCAATATCTTAAGTGATGTTCCAGGTTTACTGGATTCCAGAGCCTCTCCGTTACTTGCGGAGGATGAGGTTTTGCGTATGGCGCCACGTGCTTATATTATGACTGGTGAGCATGATGTTTTGAGGGATGATGGGATGATGTACGCCCGCAGGTTGGAGCTGGCAGGCGTCTCTGTCACTAATGACCATTATCAAGATGGATTTCATGGCTGTGTAAGCTTTGCTTTCTGGCCCTGCTACTTCTCTGTGGGAGTGAATGCAGTGCAGAATTATATCGCTTGGCTTGACAAACATTTGTAGACCTATAGGAAGAGACGaatactttaaaatgtgcatattaGGGATTTACACATTGTGATGAATTCTTTCGCAACATGACATGATTTGTAACATTTAGTTAAGAATTAAGTATCTGATGTTTTACTGTATTAAAAGAAACTGCATTGTCATTTCCAAATACtaacacatttctgtttttttaactAAGGTACTAAAAACCAAATGAcaagaattttgttttaaataatactcTCTTTCTAACACCATTAATATACACAAATATGTGCACACACCCTTTACGGTAAGCAGAATGTTTTTGAAagtgtttaaattcaaatgatggCTTAATTGCTTTTGTGCTTGTCATTACTATCACCTAACATGTTAACAAATCATGTCATTTGTAACCATGCATTTCATAAACCTTTGTAACACTTTCACTCCAGACTTGATTTTACCATATGTCTATTGCAAAACACTGTGAATAAAGCAGGAATTTATTAATGCTTcagtgataaaaataaaattaaatattgtctagttttatcaaatattttatagctatatatatatatatatattatttagagCTTATAGCTCTACCAAATAAACAATGCAAcaaa

Function

symbol description
nceh1a Predicted to enable hydrolase activity. Predicted to be integral component of membrane. Orthologous to human NCEH1 (neutral cholesterol ester hydrolase 1).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component
GO:0052689 carboxylic ester hydrolase activity molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040711-2 Predicted to enable hydrolase activity. Predicted to be integral component of membrane. Orthologous to human NCEH1 (neutral cholesterol ester hydrolase 1).

Ensembl:

ensembl_id ENSDARG00000020427

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032294 False 2384 mRNA 0.41 6 25131349 25143373
TCONS_00032295 True 1872 mRNA 0.42 5 25131617 25140022

Neighbor

gene id symbol gene type direction distance location
XLOC_016396 pccb coding downstream 11152 25108569 ~ 25120197 (-)
XLOC_016395 slc35g2a coding downstream 134908 24990398 ~ 24996441 (-)
XLOC_016394 nck1a coding downstream 149993 24963861 ~ 24981356 (-)
XLOC_016393 hltf coding downstream 168529 24944040 ~ 24962820 (-)
XLOC_016392 si:dkey-149i17.11 coding downstream 223608 24902808 ~ 24907741 (-)
XLOC_016398 CR786576.2 coding upstream 12469 25155842 ~ 25155958 (-)
XLOC_016399 si:dkey-223d7.6 coding upstream 14969 25158342 ~ 25159309 (-)
XLOC_016400 NA coding upstream 21877 25165250 ~ 25174020 (-)
XLOC_016401 ghsra coding upstream 408084 25551457 ~ 25553632 (-)
XLOC_016402 NA coding upstream 639326 25782699 ~ 25816832 (-)
XLOC_016389 NA non-coding downstream 302140 24829004 ~ 24829209 (-)
XLOC_016388 NA non-coding downstream 432185 24678696 ~ 24699164 (-)
XLOC_016386 NA non-coding downstream 558655 24568889 ~ 24572694 (-)
XLOC_016385 NA non-coding downstream 566056 24555017 ~ 24565293 (-)
XLOC_016383 NA non-coding downstream 585408 24545480 ~ 24545941 (-)
XLOC_016403 NA non-coding upstream 709306 25852679 ~ 25858506 (-)
XLOC_016405 CR392012.2 non-coding upstream 910740 26054113 ~ 26057912 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_08113788_08117378 NCEH1A coding CI01000004 null 8113374 ~ 8118079 (-)