XLOC_016386


Basic Information

Item Value
gene id XLOC_016386
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 24568889 ~ 24572694 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033833
AAAGCTTGAAGCGGACGCTATACTGTCCCTCCGTTCAGGGGTTTGACACTTTAAATACACAGATCTGTGTTCATTATCAAGTGTGCTCACACTTCTAGCCAAATCATAAACAAATCCCTGCTGcaaatgtaaatgcagttttgCTTTTCAGCCTCGATACACTGAACCTTGTTGAAGCTTTGTAATCTAATCTCCtcttctgtctttgttttgtagTATTTGCGGTATGAGCTTCTTGTTTCTGGCCGatattctttcatttgtttgtgttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtggattgggAATTTGCTGTTTTAAGTACTGTAAAAGTTGTCTTCACACTCAAGGTCTGAGATctgccgtgtaaaacatatgttagagTAATTAGCGATCCattctaggcatgggacgataaccgttatgaaggtatacagcggtttggaaaagtaaaAGTTTTAGAACCGCCAAAATAATGTTCTATCGTTCCAATAATATATCTAAGATTTTTTGTTtacgttttatttttgttttttaggacaacagtatcccCAGCAAAAAATCTGTAagaatatccaaagatgccgttttaaatagtaaagaaatacgtgtttttgaaactaatgaacagcagaagtcaatgctTAATATGAATTATTTAGATGTTTActactccaaaatattttaaatgtttctcaaactGAAGTATGTTGTGTTTaatggggatttttttttacccatatgtttaaaaagcacatattttagagcagtaatcacaataccaccAAACAATACCGtgattttttttatccaaggttatcatgccgttagaatcttatatcggcccatgcctagtccaTTTTGCTGTGGCACCCCTGATAGAGCTCTAAATACTTTCTCAATGAAATCCATGTCAGCCATTTTGCAACGAAACTGAAGTctccaggcagacagaagccccgcctATGATGCGAGTGAACCATGTCTACAGTGAAGTGATTTTGATGCGCGAATTAAGcaagtaaacaaaaatgtttcccatgtctatttatttttaaagtcaaaGGGAAGTGagtgaatgattttttttctaaattatttctTGAGGATGACGAAAACTTTGTTTTCCAGTAACTTGTACCAGTAAAATAAGAGTTTATTTTTGTCTCAATAACAAGTCTATGAAGCGTATAAATTTTTGGAGTGTGCCAATTGAGTTTTAGCCCAAAGTTTTGttataaaatcttatttttttctcagtataaattctaaacataaatttagtttgatttattttaatgagtTGCAGACTTTTTTTCATACCCAATATTTGCCAAACTATTGGAAGCTTGTTTCCACCATGGAATAAATGTTTCCATGTCAAGTTTTCTTGCCTTTCTGTTCATCACAGTTTACATCTAGCAAttgtcagtggtggaaagagtactgaaaaatcatactcatgtAAAAGTACCATAAATatccaaaaatgtagtgcgagtagagcttaagtatctgttgtaaatattacttaaagtatgagtaaaaagtagcgcttttaaaagtactcaagagtagtgagtattacagtGGGAaaggttgatgcatttacatgtaatttgtgaaagtgtgtgtgtaaacgtaacattctgtagtgcatttagttattgtttaaggccattttggcaTTATACAGTAAaaatccgtcatcttctcatcagtgacattcagtctctgggtcattgcgtgtaaagtatcttcttggacacttttaatgctttcaaacagtttgctgcatgtctTAGGGTAGTttagtatgatgcgatttactttctatgtgcgatttgattggacaggaatcgcaggattgatttttctaatccccataaacagaaaataataaagtaataaaataaagtagcgatactgcactaaaaaaagtactcaagggaaagtaaaagtacacatttttaaaactacatacTGTAGTAAATTACAATATCTAAGAAAAActgctcaattacagtagtttgttactttacaccactggcaaTTGTAACTTTTTCTTTTGCAATTTTACCTTAAAAACTTATTTAGTCTCGCAATTTTGAGTATTATGACATATAAACTTAATTTTGTGTGAAATGAATTAACAGTTTTGAGGAAAAAGTTCAGAATTAGAagtatttaaattttctttaccCCCGTGGTGGAATAAGCTTCCACACAAAATGCCCAGATCAATGGGCCAAGAAAAAAATAGTGCAAAAAGTCTGTCATGACTGTATGCATCCTTTATAATTGACAagccattgaaaaaaaaaagccaaagttTGTTGTTTGTATCTTTTAAAAATCGAGGTTTGCTACTGTTATGTTTTCAAGACACTCTCGGGTAACTGATAGTTTGCCACAATGGCTAGACTCTCCCTAGTGTCTTTTCTACTTCAGTATTTGAggacaaaactatttaaaagtgAAGCAGTTGTATAATCTCTCCCAGGGCCAACCGTTTATGTGAGACTCTGAACGTCTTCAGCCTTTAACACTGAAAACCTGCTTTATATTGGGTGAACATTTGCTGCATGGTACTGAATATTAAAATACCTGCTAGTCTCGATGTGATGTCCtgcttttttgcagttattaagcTCTGAGTATATCTGAACTCTTTGCTAGTGCATTACTAAGACTTTTGCAACTGGAAATATTATTTCTGACCAAGTggttttgtatctttttttttctttatgtacaaaaaaaaaacaaaacaaaaacaaacaacctTGTTATTGTGCTAAAGAGATGATAATGCAACCCAGTGGAACTGAAACATATACATGACAAAACTTTAAAATACtcttacagtatgtgcatttaaTGAATGTGAACTGTCTCGGTGGTTCATATCTATACAAAGGCAGCTAATTTCTATTTTTTCAATGTATGATAATTCAGATGTTGCACATACATTTGACTGAAAAGTCCTGACTTTAATCCAACTTTTTGCAACAAGACGAAACTACATTCACCAAATATGCAAACCTAGCTTTCAGGAATATAGCTTTGCAGCTCTGTGGTTTGGTTTATCTGACCCTTTAAAACAAAAGGAAAATGCTCCTGTTACTACATGTTTTCTATGaaattagaaaacaaaaataaataaaaaaagagtataAAACATTGTGGGCTTTGTAAGtgtgctacttatttaaaacaaaatgttatcAAGCTTAAATTCCATTGTCCTTACTGTATTTTTCTGTGTGGAAGCTTAAGTCTTTGTACCTTtgcattaatatttgtttattgaattgaataaaaatgtttaaaagcataTGGACTTGTCTGTCTACATCTGTttacacaaacattttaaagagCAATAAGCACTACCATTTTAATAGGGCCATGTTTATATTCAATATACAccgt

Function

GO:

id name namespace
GO:0140058 neuron projection arborization biological_process
GO:0030141 secretory granule cellular_component
GO:0004857 enzyme inhibitor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033833 True 3438 lncRNA 0.33 2 24568889 24572694

Neighbor

gene id symbol gene type direction distance location
XLOC_016385 NA coding downstream 3596 24555017 ~ 24565293 (-)
XLOC_016384 cnn2 coding downstream 14457 24548249 ~ 24554432 (-)
XLOC_016383 NA coding downstream 22948 24545480 ~ 24545941 (-)
XLOC_016382 NA coding downstream 32763 24528124 ~ 24536126 (-)
XLOC_016381 BX530024.2 coding downstream 62799 24505975 ~ 24506090 (-)
XLOC_016387 crtc1a coding upstream 5359 24578053 ~ 24603325 (-)
XLOC_016388 NA coding upstream 106002 24678696 ~ 24699164 (-)
XLOC_016389 NA coding upstream 256310 24829004 ~ 24829209 (-)
XLOC_016390 si:dkey-149i17.9 coding upstream 324298 24896992 ~ 24898226 (-)
XLOC_016391 si:dkey-149i17.8 coding upstream 327877 24900571 ~ 24901912 (-)
XLOC_016374 NA non-coding downstream 251453 24310635 ~ 24317436 (-)
XLOC_016398 CR786576.2 non-coding upstream 583148 25155842 ~ 25155958 (-)
XLOC_016400 NA non-coding upstream 592556 25165250 ~ 25174020 (-)
XLOC_016402 NA non-coding upstream 1210005 25782699 ~ 25816832 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G29542 NA non-coding CI01000004 null 7798550 ~ 7800281 (-)
eurasian perch (Perca fluviatilis) G24856 NA non-coding NC_053114.1 CM020911.1 535326 ~ 535595 (+)
tiger barb (Puntius tetrazona) G11189 NA non-coding NC_056700.1 CM032069.1 11453571 ~ 11454111 (+)