XLOC_016384 (cnn2)


Basic Information

Item Value
gene id XLOC_016384
gene name cnn2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 24548249 ~ 24554432 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032277
GGGGAAGTACTAGATGTACCTACGCTAAAATAGTGAAGCGGACAAAACTCAAACTTTAGCGAAGTCTTTTCTTTCAGTTCCCGTTCATCTTTTTGGTAAAGTTGGGTTCTTTTGTTGCTGATAATGTCTTCGCAGTTTAACAGAGGCCCGGCGTACGGGTTTTCAGCGGAAGTGAAAAGCAAGATTGCACAGAAATATGACCCACAGAGAGAGGAAGAATTACGAATCTGGATTGAGAATACTACAGGGCGATCGATTGGAGACGACTTCCAGAAAGGATTAAAAAATGGTGTGATTCTCTGCGAGCTCATAAACAAACTTCAGCCAGGCTCTGTAAAGAAGATTAACCAGTCTTCCCAAAACTGGCATCAGCTAGAGAACCTGACCAACTTCATTAAAGCGATCACCACCTATGGACTCAAGCCTCATGACATCTTTGAGGCCAATGATCTGTTCGAGAATGGAAATATGACACAGGTTCAGACCACCCTCCTGGCACTCGCTGGCATGGCTAAAACCAAGGGCATTCATTCGAGTGTGGACATAGGGGTGAAATATGCCGAAAGACAGGAGAGGGCATTTgatgatgagaaaatgaaggctGGCCAATGTGTCATCGGACTACAGATGGGAACAAATAAATGTGCAAGTCAGGCTGGAATGAACGCCTATGGCACTCGAAGACATCTGTATGATCCCAAGTCACACATTCTGCCACCAATGGACCATTCAACCATCAGTCTGCAGATGGGCACCAATAAGGGTGCTAGTCAAGCTGGTATGACAGCTCCAGGCACTCGCCGTGCCATCTACGACCAGAAAACTGGCACAGACAAGTGTGACAACTCCACCATGTCTTTGCAAATGGGATATTCTCAAGGTGCCAACCAGAGCGGGCAAAACTTCGGTCTTGGCCGTCAGATCTACGATGCCAAATACTGTCCTAAAGGTGGCGCTGTTGCAGCTGGAGAAGGAAACGATGGTCAGTACACAGATTACCAAGACGAGGGTTACCAGGGCTATCAGGACGACGGCCAAGATTACTAAATCCAAACAAGTCTGAATAAAAGAAGCTAAAGGGAAGTTGATACTTCCTCAAACAAAAAGACCCAAAACATGCCATTACACATCACAGTAAGCGTGCCATCTGCCGGATAGTGATGAAAGTAACCAATATAAAACATATCACTTATGTTATAAATATAgcgttgttttaaatttttataaaccATATGTTTTGTTGACCTGAAATCAGAGTGCCACAAAACATATGTGTGTAGTGTTATGTGTATTGATATTTCTTGTATTTTTATATGGTTCAAGTGACATTCATTTAATTGCACAACCACTATAATAATATTTAGTATTTGCGTAGTtgttcatagtattttttttaaatttgtttcgAATGCTGAAACGCAAGTGTGACGGGGgttattgtgaagttgcattttCATAATCCCAAACGATGAATTGTATTTTAGTTCCTGCTCTAATCAAACTGTTGTGTAGAAAATTGCTGTTGAGTTAGTAAGTGAGCCTGATTTTGTACTGATTGAATACAGAACATGCTCAGGGGTTTAAAAATCACTCTCTTTTTGTCGCTCGAACATGTGAAGGTGACTTTATGCTGTTACAATTGAAAGATGCAAAGTTAAAATAGTGAGGTTTTCATTGTAGAGTCGTTCGTCGTGTTAATTTAAGAGCTTATTTCCCCAGtcgtattttgtttttgtgtttttaggCTGGAAAGTGAGAGCACATTCTTGACATGCACAAAAAGGAACAGCTTATCTATCATTTCAGCAGCATTTCTGCTTTCGCCATTCTAAACATTACACTTCCTCACTTAATATGGGGGGATGAATGCGGTTTGTTTTTATAATACACTTTAGTGTCTGACGTGCCGACTGTAAGGAGTCTTAAGGAGTTCATCTTTGTATTAGTGTTTCATTTCTCGTTGAATATTTTAGCGCTTGCAGAGCCAGATGAACTGGAGCGTGTCTTGTTTTTGTTGGATCTTAGTATTTTGAAAGGAAATTGAAGTATATCATTGTGAGCCTTGAACATTCCAAATTAGGAACTGGATTCACTTCTTTCATTCCACAGTATTTTATTCTCATTCCAAAATACGCTTTGTACTAGACATCGGAGATTCGAGGTCTGCTCAGATAAATTACATACATGATGGATGTATCTGTGTGTTTTTCTTGTACTTTTTTATGAAATATGATGGTTGGACATTGAAGATTGGGTTTATAATAAATGATCATGAACAGgta
>TCONS_00032278
GGACAGGAAACTCGGGGGGGAAGTACTAGATGTACCTACGCTAAAATAGTGAAGCGGACAAAACTCAAACTTTAGCGAAGTCTTTTCTTTCAGTTCCCGTTCATCTTTTTGGTAAAGTTGGGTTCTTTTGTTGCTGATAATGTCTTCGCAGTTTAACAGAGGCCCGGCGTACGGGTTTTCAGCGGAAGTGAAAAGCAAGATTGCACAGAAATATGACCCACAGAGAGAGGAAGAATTACGAATCTGGATTGAGAATACTACAGGGCGATCGATTGGAGACGACTTCCAGAAAGGATTAAAAAATGGTGTGATTCTCTGCGAGCTCATAAACAAACTTCAGCCAGGCTCTGTAAAGAAGATTAACCAGTCTTCCCAAAACTGGCATCAGCTAGAGAACCTGACCAACTTCATTAAAGCGATCACCACCTATGGACTCAAGCCTCATGACATCTTTGAGGCCAATGATCTGTTCGAGAATGGAAATATGACACAGGTTCAGACCACCCTCCTGGCACTCGCTGGCATGGCTAAAACCAAGGGCATTCATTCGAGTGTGGACATAGGGGTGAAATATGCCGAAAGACAGGAGAGGGCATTTgatgatgagaaaatgaaggctGGCCAATGTGTCATCGGACTACAGATGGGAACAAATAAATGTGCAAGTCAGGCTGGAATGAACGCCTATGGCACTCGAAGACATCTGTATGATCCCAAGTCACACATTCTGCCACCAATGGACCATTCAACCATCAGTCTGCAGATGGGCACCAATAAGGGTGCTAGTCAAGTAAGTATGACCCTTCTATTGTCTTAAAGCGTAagcatatttataatataatat
>TCONS_00032279
GGACAGGAAACTCGGGGGGGAAGTACTAGATGTACCTACGCTAAAATAGTGAAGCGGACAAAACTCAAACTTTAGCGAAGTCTTTTCTTTCAGTTCCCGTTCATCTTTTTGGTAAAGTTGGGTTCTTTTGTTGCTGATAATGTCTTCGCAGTTTAACAGAGGCCCGGCGTACGGGTTTTCAGCGGAAGTGAAAAGCAAGATTGCACAGAAATATGACCCACAGAGAGAGGAAGAATTACGAATCTGGATTGAGAATACTACAGGGCGATCGATTGGAGACGACTTCCAGAAAGGATTAAAAAATGGTGTGATTCTCTGCGAGTAAGTGTGCATTTGTACATGTTTTCAAAGTTATTTCTTTTCAGAGACAGTTACACAATACACATTTGCACAACCTTGAGGTCTTGATGTTTCCCTAAAGGCTCATAAACAAACTTCAGCCAGGCTCTGTAAAGAAGATTAACCAGTCTTCCCAAAACTGGCATCAGCTAGAGAACCTGACCAACTTCATTAAAGCGATCACCACCTATGGACTCAAGCCTCATGACATCTTTGAGGCCAATGATCTGTTCGAGAATGGAAATATGACACAGGTTCAGACCACCCTCCTGGCACTCGCTGGCATGGCTAAAACCAAGGGCATTCATTCGAGTGTGGACATAGGGGTGAAATATGCCGAAAGACAGGAGAGGGCATTTgatgatgagaaaatgaaggctGGCCAATGTGTCATCGGACTACAGATGGGAACAAATAAATGTGCAAGTCAGGCTGGAATGAACGCCTATGGCACTCGAAGACATCTGTATGATCCCAAGTCACACATTCTGCCACCAATGGACCATTCAACCATCAGTCTGCAGATGGG

Function

symbol description
cnn2 Predicted to enable actin binding activity and calmodulin binding activity. Acts upstream of or within regulation of MAPK cascade; regulation of blood vessel endothelial cell migration; and response to steroid hormone. Predicted to be active in cytoskeleton. Is expressed in several structures, including central nervous system; digestive system; mesoderm; periderm; and vasculature. Orthologous to human CNN2 (calponin 2).

GO:

id name namespace
GO:0048545 response to steroid hormone biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0043408 regulation of MAPK cascade biological_process
GO:0043535 regulation of blood vessel endothelial cell migration biological_process
GO:0005516 calmodulin binding molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-542 Predicted to enable actin binding activity and calmodulin binding activity. Acts upstream of or within regulation of MAPK cascade; regulation of blood vessel endothelial cell migration; and response to steroid hormone. Predicted to be active in cytoskeleton. Is expressed in several structures, including central nervous system; digestive system; mesoderm; periderm; and vasculature. Orthologous to human CNN2 (calponin 2).

Ensembl:

ensembl_id ENSDARG00000035858

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032277 False 2282 mRNA 0.40 7 24548249 24554416
TCONS_00032278 False 844 lncRNA 0.44 6 24552377 24554432
TCONS_00032279 True 868 lncRNA 0.44 5 24552453 24554432

Neighbor

gene id symbol gene type direction distance location
XLOC_016383 NA coding downstream 2308 24545480 ~ 24545941 (-)
XLOC_016382 NA coding downstream 12123 24528124 ~ 24536126 (-)
XLOC_016381 BX530024.2 coding downstream 42159 24505975 ~ 24506090 (-)
XLOC_016380 si:rp71-39b20.4 coding downstream 43064 24495804 ~ 24505185 (-)
XLOC_016379 insl3 coding downstream 59597 24487320 ~ 24488652 (-)
XLOC_016385 NA coding upstream 585 24555017 ~ 24565293 (-)
XLOC_016386 NA coding upstream 14457 24568889 ~ 24572694 (-)
XLOC_016387 crtc1a coding upstream 23621 24578053 ~ 24603325 (-)
XLOC_016388 NA coding upstream 124264 24678696 ~ 24699164 (-)
XLOC_016389 NA coding upstream 274572 24829004 ~ 24829209 (-)
XLOC_016374 NA non-coding downstream 230813 24310635 ~ 24317436 (-)
XLOC_016372 dre-mir-736 non-coding downstream 286953 24261217 ~ 24261296 (-)
XLOC_016398 CR786576.2 non-coding upstream 601410 25155842 ~ 25155958 (-)

Expression


Co-expression Network