XLOC_016403


Basic Information

Item Value
gene id XLOC_016403
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 25852679 ~ 25858506 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033370
GAATAATGATGCACCATAATGCAGCCAGTTTTTCTCACTTGATGAATGTCTTCCTTTAggtaATTATTCTGCTGTTTCCATCATCAAAAATATTTCAGTGAGATCCAGAAGTAAATTGTGACCGTTTTGTCATTGCAGACTGTAGAAGAAGCTCCTACGAGAAGCTTGAGTTTGATCCAGAATTGCTGGTCATCTTGAAAGCGAGACAACCTTCAGAAACCATCCCACAATTCCCACAACTCTC
>TCONS_00032302
GAATAATGATGCACCATAATGCAGCCAGTTTTTCTCACTTGATGAATGTCTTCCTTTAggtaATTATTCTGCTGTTTCCATCATCAAAAATATTTCAGTGAGATCCAGAAGTAAATTCATGTGACCGTTTTGTCATTGCAGACTGTAGAAGAAGCTCCTACGAGAAGCTTGAGTTTGATCCAGAATTGCTGGTCATCTTGAAAGCGAGACAACCTTCAGAAACCATCCCACAATTCCCACAACTCTC
>TCONS_00032303
GCAACTTTTATCAGTTTTTCTACTTTGGAAGTTGTTCATGATGAACCAGCGGCGCTCCAGAAGGAGAAGAGCTCTCCCAGCTTACCTGAAGGACTTCATGCTGGAGCACGCCTCTTCCGTTGAGGAGCGCGCAGCGGCGGTCAGGCTGGACCACAGCTACAGCTGCATCTCGGACGCATCTCTGGAGGAACGGCACCTGAGGAACGCGGCTGTCCTCCCTGTCCTCTGCCCTGCAGCCTCAGTCTCCTCAGTGGGCGAGTGTCAACAGGAGGAGCCACTCTTCATCCACGGCCGGAGTGTGCAGGACTATCGGCACATTCATCGCAATGTGACGGGCTCCATCATGAAGAAGCGTGGTGGTAGGTACAAGTTGCAGCGAGGCCTAGAGgtcaagcagcggctgtgggacgAGCTGGACCGGCCTGCACTGCTGGAGACCGAGCAGTCTGACGGACGTGTGGTCATCACAGAGGTCAGATCCTGCTCCAGAGTTGCTCCTCAAATCATGGTGGACATCAGTGGAGAGCCACTTCCTGAGGAGCCCCGAAGAAAGAAGCCCAGGCACTGAACCATCCTAGTGCCACATGGAGCATCAAGGGCACGAAGAAGTGCCTCAGACAAGAAGTGGAGAGCTGTGCTTTGGGGAGCCCTGCTGCTGCTGAGCTTCTAGAGCATGTGCAGTCCAGATCCTGGATCTCTGCTCACCTGCACTCAAGTAAACACTGATGCAGCACCGGTGTGACCGTTTTGTCATTGCAGACTGTAGAAGAAGCTCCTACGAGAAGCTTGAGTTTGATCCAGAATTGCTGGTCATCTTGAAAGCGAGACAACCTTCAGAAACCATCCCACAATTCCCACAACTCTC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000092287

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033370 False 244 lncRNA 0.40 3 25852679 25853799
TCONS_00032302 False 247 processed_transcript 0.40 3 25852679 25853799
TCONS_00032303 True 865 processed_transcript 0.56 3 25852679 25858506

Neighbor

gene id symbol gene type direction distance location
XLOC_016402 NA coding downstream 35847 25782699 ~ 25816832 (-)
XLOC_016401 ghsra coding downstream 299047 25551457 ~ 25553632 (-)
XLOC_016400 NA coding downstream 678659 25165250 ~ 25174020 (-)
XLOC_016399 si:dkey-223d7.6 coding downstream 693370 25158342 ~ 25159309 (-)
XLOC_016398 CR786576.2 coding downstream 696721 25155842 ~ 25155958 (-)
XLOC_016404 cldn11a coding upstream 138920 25997426 ~ 26001173 (-)
XLOC_016405 CR392012.2 coding upstream 195607 26054113 ~ 26057912 (-)
XLOC_016406 CR392012.3 coding upstream 226656 26085162 ~ 26085279 (-)
XLOC_016407 NA coding upstream 334203 26192709 ~ 26273332 (-)
XLOC_016408 NA coding upstream 427954 26286460 ~ 26287832 (-)
XLOC_016389 NA non-coding downstream 1023470 24829004 ~ 24829209 (-)
XLOC_016388 NA non-coding downstream 1153515 24678696 ~ 24699164 (-)
XLOC_016409 CT027702.1 non-coding upstream 576430 26434936 ~ 26436113 (-)

Expression


Co-expression Network