XLOC_016420 (u2surp)


Basic Information

Item Value
gene id XLOC_016420
gene name u2surp
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 26623377 ~ 26642944 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032338
gcgCCTCACGCGCTTTCACAGTGTCGGGCAAAATGGCGGACAAAACGCCAGGTGGGGCCCAGAAAGGCAACTCTAAGgcTTTATTGGAAAGTAAGTTAAAGGCTTTCAGTATTGGCAAGATGGCAGTTGCAAAAAGAACACTAAGTAAAAAAGAGCAAGATGAAATCAAGAAGAAGGAGGATGAAAGGGCAGCTGCGGAGATCTATGAGGAATTTCTTGCTGCCTTTGAGGGAGGTGAAGGAAAAGTGAAGACTTTTGTACGTGGTGGGATTGCTAATGCTACGAAAGAGGAAGCGGCAGCCGATGAGAAGAAAGGAAAGCTTTACAAACCAAAATCAAGGATTGTGGAAGCTAAAAGTTTTTTACCTTTGGAAACCCCACAACAGTTTTTACCAATAGATAAACGCAATGCATCGAAAAAGGgagacaaagaaaagaaaaagagcaaCCTTGAGCTCTTCAAAGAAGAACTCAAACAGATACAGGAGGAGCGTGATGAACGTCACAGGTTGAAGGGTCGAGTCAGTCGTTTTGAGCCTCTTCCCACAACGGAAGGAAGGCGATCCTCGGATGGTTCTTCACGAAGAAACCGTCCGTCCAGtgTCTTGGATGATTCTGCTCCTGGCTCACATGACGTTGGAGatccaacaacaacaaatttgTATTTAGGCAACATAAATCCTCAGATGAATGAGGAGATGCTCTGCCAGGAGTTTGGTCGGTATGGTCCCTTAGCCAGTGTGAAAATCATGTGGCCTAGGACTGATGAGGAGAGGGCCAGAGAAAGGAACTGTGGCTTTGTAGCCTTCATGACGAGGAGAGACGCTGAACGTgcacttaaacatttaaatgGCAAAATGATAATGAACTTTGAAATGAAACTGGGATGGGGCAAAGGTGTACCAATTCCTCCTCATCCAATATACATTCCACCTTCAATGATGGAGCACACCCTTCCGCCTCCACCCTCTGGCCTGCCCTTCAATGCCCAGCCCAAAGAGAGGCTAAAGAACCCCAACGCAGCCATGCCTCCCCCTCCAAAGTGCAAAGAGGAGTTTGAGAAGACTCTGTCGCAAGCCATAGTCAAAGTGGTTATCCCAACAGAAAGGAATTTGCTCTCTCTCATCCACCGAATGATCGAGTTTGTGGTGCGTGAGGGCCCTATGTTTGAAGCTATGATCATGAACAGAGAAATCAACAATCCACTCTACAGGTTTTTATTTGAAAATCAAAGTCCAGCACATGTCTATTATCGCTGGAAGTTGTACACCATTTTACAGGGAGAATCTCCAACAAAATGGAAAACAGAAGACTTTAGGATGTTTAAGAACGGATCTCTTTGGCGACCGCCTCCTCTCAACCCATATTTGCACGGCACTCCTGAAGATGAGGAGCACGAGGATGACGACGACGAAGAAATCTGCAAGAAGGGTTCCTTGAAGGACGAGGAAAGGGATAAATTAGAGGAGCTGCTTCGGGGTCTCACGCCGAGGAAGAGTGACATTGCAGGCGGGATGTTTTTCTGCCTCACTCATGCTGATGCGGCTGAGGAGATAGTGGAGTGCATCGCAGAGTCTCTGTCCATACTCAAAACCCCTCTGCCAAAGAAGATTGCAAGGCTATATTTGGTGTCGGATGTGCTTTATAACTCATCTGCAAAAGTTACTAATGCCTCCTATTACAGAAAATTCTTTGAAACAAAACTATGTCAGATATTTTCTGACCTAAATGCTACTTATAAGACAATACAGGGCCATTTACAATCAGAAAATTTTAAGCAACGAGTAATGTCCTGTTTCCGTGCGTGGGAAGAATGGGCAGTTTATCCTGATCCATTTCTGATCAAACTTCAGAACATTTTCTTAGGACTGGTCAGTCTTGATCCTGAAAAGGAGCCTGAAGAGCTTGTGCCAGAGCTACCAGAAAAGGTGGAGGACATTGATGGTGCTCCGATTGTGGAGGAGGAGTTAGATGGTGCTCCTTTGGATGACGTTGATGGGATGCCCATCGATGGAGCCCCAATTGATGGTGCATCGATGGATGACCTGGATGGAATGCCCATTAAAGGAGCAGATGATGATCTGGATGGAGTTCCTTtGGATCAAAAACCAGGTTTTAAGGTTGCCCCATCAAAATGGGAGGCAGTGGATGGTGCTGCTTTGGAGGCTCAAGCTGTAACCACGTCAAAATGGGAAATCTTTGATCTGCCAGAAGAATCTGAGAAAAGTAAATCAAGCACAAAAAGTGAAGCAGAGGGCAAAAACTCCCACAAGAGCTCCAGTGCTGCGGACCAGCAGTCCTACAGTAATCCTGTTAGAGAAGAGTATGATTTAAAGTCTGCAAAGTTTTCTGAGACGAGCGAGGAGAAGCGTGCCAAACTACGTGAAATTGAGCTTAAAGTCATGAAGTTTCAAGATGAGCTTGAATCTGGAAAACGGCCCAAAAAATCTGGACAGAGCATTCAGGAGCAAGTAGAGCTTTACCGGGATAAGTTACTACAGCGGGAGAAGGAGAAAGAGACGGAGAAagacaaagagaaagaaaaagaaaaggagagaaAAGACAAAGAGAAATCGGACGTGTTCCACAAAGAGAAAGACAAAGATGAATCCACACCGGGTAGAAAAGAAAAGAAACGGAGGCACAGTCCATCCCCCAGCCCGACacgaagcagcagcagcagacggGGCAGATCACCTTCGCCCCGATCAGAGCGCTCCGATAGATCCTACACAAGAGACAGCTCACGATCAGCTTATAAAGACTCTCCAAGAGAAAGCAACCGCAAGTCATCTAAAAGATCTCCTTCACCTCCAAGAACCCCCAAGAGGTCGCGCAGATCCAGATCAAGAACGCCCAAAAAAGCCTCAAAGAAATCCAGATCGCGGTCACGATCACCCCATCGCTCGCACAAAAAATCCAAAAAGAGCAAACACTGAGAGATTATCAAATGATGCCTGGGTTGTCTTTTGTGCCTCAAATTTGTCCTGCAAATCATTGTGAGGGACATTCCCTCTTTCAGCCCTCCTGGTTTtgaatctcattcacacacagtgtTCAAGGCTCATCTATAGGCTGTTTTATGACATCATCTAGGAGATTCCGTTGATGTTCCATGTGTCCGAAAACAAAATAACTGCAGGGGTTGGGGCAGTCATCCATCAATAtgaaaatttttcttttttttttttcctttttgtcattgtttttagATCCCATGAAACTGACTTAAATTAAAATAGTGTAAGTTTCAGTTGTATAGATGTTTGCTTTTCAATAAAGACAATTTATGTGA
>TCONS_00032339
gagtgagtgagtgagtgagtgagagagagagagagagagagagagagagagagagagagagagagagagagaacgcgCCTCACGCGCTTTCACAGTGTCGGGCAAAATGGCGGACAAAACGCCAGGTGGGGCCCAGAAAGGCAACTCTAAGgcTTTATTGGAAAGTAAGTTAAAGGCTTTCAGTATTGGCAAGATGGCAGTTGCAAAAAGAACACTAAGTAAAAAAGAGCAAGATGAAATCAAGAAGAAGGAGGATGAAAGGGCAGCTGCGGAGATCTATGAGGAATTTCTTGCTGCCTTTGAGGGAGGTGAAGGAAAAGTGAAGACTTTTGTACGTGGTGGGATTGCTAATGCTACGAAAGAGGAAGCGGCAGCCGATGAGAAGAAAGGAAAGCTTTACAAACCAAAATCAAGGATTGTGGAAGCTAAAAGTTTTTTACCTTTGGAAACCCCACAACAGTTTTTACCAATAGATAAACGCAATGCATCGAAAAAGGgagacaaagaaaagaaaaagagcaaCCTTGAGCTCTTCAAAGAAGAACTCAAACAGATACAGGAGGAGCGTGATGAACGTCACAGGTTGAAGGGTCGAGTCAGTCGTTTTGAGCCTCTTCCCACAACGGAAGGAAGGCGATCCTCGGATGGTTCTTCACGAAGAAACCGTCCGTCCAGtgTCTTGGATGATTCTGCTCCTGGCTCACATGACGTTGGAGatccaacaacaacaaatttgTATTTAGGCAACATAAATCCTCAGATGAATGAGGAGATGCTCTGCCAGGAGTTTGGTCGGTATGGTCCCTTAGCCAGTGTGAAAATCATGTGGCCTAGGACTGATGAGGAGAGGGCCAGAGAAAGGAACTGTGGCTTTGTAGCCTTCATGACGAGGAGAGACGCTGAACGTgcacttaaacatttaaatgGCAAAATGATAATGAACTTTGAAATGAAACTGGGATGGGGCAAAGGTGTACCAATTCCTCCTCATCCAATATACATTCCACCTTCAATGATGGAGCACACCCTTCCGCCTCCACCCTCTGGCCTGCCCTTCAATGCCCAGCCCAAAGAGAGGCTAAAGAACCCCAACGCAGCCATGCCTCCCCCTCCAAAGTGCAAAGAGGAGTTTGAGAAGACTCTGTCGCAAGCCATAGTCAAAGTGGTTATCCCAACAGAAAGGAATTTGCTCTCTCTCATCCACCGAATGATCGAGTTTGTGGTGCGTGAGGGCCCTATGTTTGAAGCTATGATCATGAACAGAGAAATCAACAATCCACTCTACAGGTTTTTATTTGAAAATCAAAGTCCAGCACATGTCTATTATCGCTGGAAGTTGTACACCATTTTACAGGGAGAATCTCCAACAAAATGGAAAACAGAAGACTTTAGGATGTTTAAGAACGGATCTCTTTGGCGACCGCCTCCTCTCAACCCATATTTGCACGGCACTCCTGAAGATGAGGAGCACGAGGATGACGACGACGAAGAAATCTGCAAGAAGGGTTCCTTGAAGGACGAGGAAAGGGATAAATTAGAGGAGCTGCTTCGGGGTCTCACGCCGAGGAAGAGTGACATTGCAGGCGGGATGTTTTTCTGCCTCACTCATGCTGATGCGGCTGAGGAGATAGTGGAGTGCATCGCAGAGTCTCTGTCCATACTCAAAACCCCTCTGCCAAAGAAGATTGCAAGGCTATATTTGGTGTCGGATGTGCTTTATAACTCATCTGCAAAAGTTACTAATGCCTCCTATTACAGAAAATTCTTTGAAACAAAACTATGTCAGATATTTTCTGACCTAAATGCTACTTATAAGACAATACAGGGCCATTTACAATCAGAAAATTTTAAGCAACGAGTAATGTCCTGTTTCCGTGCGTGGGAAGAATGGGCAGTTTATCCTGATCCATTTCTGATCAAACTTCAGAACATTTTCTTAGGACTGGTCAGTCTTGATCCTGAAAAGGAGCCTGAAGAGCTTGTGCCAGAGCTACCAGAAAAGGTGGAGGACATTGATGGTGCTCCGATTGTGGAGGAGGAGTTAGATGGTGCTCCTTTGGATGACGTTGATGGGATGCCCATCGATGGAGCCCCAATTGATGGTGCATCGATGGATGACCTGGATGGAATGCCCATTAAAGGAGCAGATGATGATCTGGATGGAGTTCCTTtGGATCAAAAACCAGGTTTTAAGGTTGCCCCATCAAAATGGGAGGCAGTGGATGGTGCTGCTTTGGAGGCTCAAGCTGTAACCACGTCAAAATGGGAAATCTTTGATCTGCCAGAAGAATCTGAGAAAAGTAAATCAAGCACAAAAAGTGAAGCAGAGGGCAAAAACTCCCACAAGAGCTCCAGTGCTGCGGACCAGCAGTCCTACAGTAATCCTGTTAGAGAAGAGTATGATTTAAAGTCTGCAAAGTTTTCTGAGACGAGCGAGGAGAAGCGTGCCAAACTACGTGAAATTGAGCTTAAAGTCATGAAGTTTCAAGATGAGCTTGAATCTGGAAAACGGCCCAAAAAATCTGGACAGAGCATTCAGGAGCAAGTAGAGCTTTACCGGGATAAGTTACTACAGCGGGAGAAGGAGAAAGAGACGGAGAAagacaaagagaaagaaaaagaaaaggagagaaAAGACAAAGAGAAATCGGACGTGTTCCACAAAGAGAAAGACAAAGATGAATCCACACCGGGTAGAAAAGAAAAGAAACGGAGGCACAGTCCATCCCCCAGCCCGACacgaagcagcagcagcagacggGGCAGATCACCTTCGCCCCGATCAGAGCGCTCCGATAGATCCTACACAAGAGACAGCTCACGATCAGCTTATAAAGACTCTCCAAGAGAAAGCAACCGCAAGTCATCTAAAAGGTAAACTTCATTTCTTTTAGTTGGAGTTGGTCCGTCTCAGTCAGTACATGCATCGTTTtggaatgggctatatgcacagacttttaatttcagcgaGCCAGCCTTagcacttccggtgaactgtctttctgATATAAAATTGCCACACTtcaggtctgatttctttaaaaattttcTCTGActgatagatatacgatatgaagtgggtctcagaccggacTAGAAGCATTGCATTAAATTTTCCCCCGTCAggtctttaaaatatgatttcattttaccccagtatttttaatgaaGTTTCTGCGCTCGTCTGCTGATCCTGATGGTGCTAGCGATTACacagtctttcatctcatttAATGCTTgatcaactaaatgaatgcttaagtctatttaactaaatgtatttgaatgaaattacaacatcgatgctgtaaatgGAGCCTTATAAAATGGAAAATagtcatcattggctgaaaaacactagctgtgcatatacctcGTTACACTCAACCtaatgtcttgtttttaaatgtgatttcagATCTCCTTCACCTCCAAGAACCCCCAAGAGGTCGCGCAGATCCAGATCAAGAACGCCCAAAAAAGCCTCAAAGAAATCCAGATCGCGGTCACGATCACCCCATCGCTCGCACAAAAAATCCAAAAAGAGCAAACACTGAGAGATTATCAAATGATGCCTGGGTTGTCTTTTGTGCCTCAAATTTGTCCTGCAAATCATTGTGAGGGACATTCCCTCTTTCAGCCCTCCTGGTTTtgaatctcattcacacacagtgtTCAAGGCTCATCTATAGGCTGTTTTATGACATCATCTAGGAGATTCCGTTGATGTTCCATGTGTCCGAAAACAAAATAACTGCAGGGGTTGGGGCAGTCATCCATCAATAtgaaaatttttcttttttttttttcctttttgtcattgtttttagATCCCATGAAACTGACTTAAATTAAAATAGTGTAAGTTTCAGTTGTATAGATGTTTGCTTTTCAATAAAGACAATTTATGTGA
>TCONS_00032340
AAATTAGAGGAGCTGCTTCGGGGTCTCACGCCGAGGAAGAGTGACATTGCAGGCGGGATGTTTTTCTGCCTCACTCATGCTGATGCGGCTGAGGAGATAGTGGAGTGCATCGCAGAGTCTCTGTCCATACTCAAAACCCCTCTGCCAAAGAAGGTCACCCTTATGCTGCAGAATTAACATTAATAGATTTTTGCTTGCATTGCGGAACTTTTGTTTACATCTGCATTTCTGTCCTCCCTCAGATTGCAAGGCTATATTTGGTGTCGGATGTGCTTTATAACTCATCTGCAAAAGTTACTAATGCCTCCTATTACAGAAAATTGTAAGTATATTTAAGTGTCAATTTAAGTTACTTGTTCTTGTCTGTTTATTCAATGTTTTTTGTCTTCTTTCCTTTACAGCTTTGAAACAAAACTATGTCAGATATTTTCTGACCTAAATGCTACTTATAAGACAATACAGGGCCATTTACAATCAGAAAATTTTAAGCAACGAGTAATGTCCTGTTTCCGTGCGTGGGAAGAATGGGCAGTTTATCCTGATCCATTTCTGATCAAACTTCAGAACATTTTCTTAGGACTGGTCAGTCTTGATCCTGAAAAGGAGCCTGAAGAGCTTGTGCCAGAGCTACCAGAAAAGGTGGAGGACATTGATGGTGCTCCGATTGTGGAGGAGGAGTTAGATGGTGCTCCTTTGGATGACGTTGATGGGATGCCCAT
>TCONS_00032341
ACAAAACGCCAGGTGGGGCCCAGAAAGGCAACTCTAAGgcTTTATTGGAAAGTAAGTTAAAGGCTTTCAGTATTGGCAAGATGGCAGTTGCAAAAAGAACACTAAGTAAAAAAGAGCAAGATGAAATCAAGAAGAAGGAGGATGAAAGGGCAGCTGCGGAGATCTATGAGGAATTTCTTGCTGCCTTTGAGGGAGGTGAAGGAAAAGTGAAGACTTTTGTACGTGGTGGGATTGCTAATGCTACGAAAGAGGAAGCGGCAGCCGATGAGAAGAAAGGAAAGCTTTACAAACCAAAATCAAGGATTGTGGAAGCTAAAAGTTTTTTACCTTTGGAAACCCCACAACAGTTTTTACCAATAGATAAACGCAATGCATCGAAAAAGGgagacaaagaaaagaaaaagagcaaCCTTGAGCTCTTCAAAGAAGAACTCAAACAGATACAGGAGGAGCGTGATGAACGTCACAGGTTGAAGGGTCGAGTCAGTCGTTTTGAGCCTCTTCCCACAACGGAAGGAAGGCGATCCTTCTTGGATGATTCTGCTCCTGGCTCACATGACGTTGGAGatccaacaacaacaaatttgTATTTAGGCAACATAAATCCTCAGATGAATGAGGAGATGCTCTGCCAGGAGTTTGGTCGGTATGGTCCCTTAGCCAGTGTGAAAATCATGTGGCCTAGGACTGATGAGGAGAGGGCCAGAGAAAGGAACTGTGGCTTTGTAGCCTTCATGACGAGGAGAGACGCTGAACGTgcacttaaacatttaaatgGCAAAATGATAATGAACTTTGAAATGAAACTGGGATGGGGCAAAGGTGTACC

Function

symbol description
u2surp Predicted to enable RNA binding activity. Predicted to act upstream of or within RNA processing. Orthologous to human U2SURP (U2 snRNP associated SURP domain containing).

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-400 Predicted to enable RNA binding activity. Predicted to act upstream of or within RNA processing. Orthologous to human U2SURP (U2 snRNP associated SURP domain containing).

Ensembl:

ensembl_id ENSDARG00000061490

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032338 False 3295 mRNA 0.45 26 26623377 26642870
TCONS_00032339 False 3913 mRNA 0.44 25 26623377 26642944
TCONS_00032340 False 719 lncRNA 0.42 3 26630615 26631518
TCONS_00032341 True 829 mRNA 0.44 9 26637413 26642831

Neighbor

gene id symbol gene type direction distance location
XLOC_016419 tmem59 coding downstream 2475 26612574 ~ 26620902 (-)
XLOC_016418 yipf1 coding downstream 19059 26598801 ~ 26604318 (-)
XLOC_016417 zgc:113691 coding downstream 26583 26591968 ~ 26596794 (-)
XLOC_016416 ndc1 coding downstream 32749 26576853 ~ 26590628 (-)
XLOC_016415 glis1a coding downstream 59399 26529447 ~ 26563978 (-)
XLOC_016421 dre-mir-124-1 coding upstream 2373 26645317 ~ 26645398 (-)
XLOC_016422 si:dkey-181m9.8 coding upstream 49414 26692358 ~ 26720854 (-)
XLOC_016423 si:dkey-181m9.8 coding upstream 71154 26714098 ~ 26715998 (-)
XLOC_016424 BX511023.2 coding upstream 396744 27039688 ~ 27039804 (-)
XLOC_016425 BX649522.2 coding upstream 590722 27233666 ~ 27233781 (-)
XLOC_016409 CT027702.1 non-coding downstream 187264 26434936 ~ 26436113 (-)
XLOC_016408 NA non-coding downstream 335545 26286460 ~ 26287832 (-)
XLOC_016407 NA non-coding downstream 350045 26192709 ~ 26273332 (-)
XLOC_016406 CR392012.3 non-coding downstream 538098 26085162 ~ 26085279 (-)
XLOC_016405 CR392012.2 non-coding downstream 565465 26054113 ~ 26057912 (-)
XLOC_016429 NA non-coding upstream 745622 27388566 ~ 27390098 (-)
XLOC_016430 NA non-coding upstream 820441 27463385 ~ 27464441 (-)

Expression


Co-expression Network