RNA id: TCONS_00032416


Basic Information

Item Value
RNA id TCONS_00032416
length 5164
RNA type mRNA
GC content 0.38
exon number 5
gene id XLOC_016476
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 30752501 ~ 30784502 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTCATGTAACAGACTCATCTTAAAGTGGGTGGTCTGGCCCTCTTCTGTGGTACCGAGTGTTCGGCGTCCTCCCTACTTGATGTGGGGACAGCTGAGGCATCTTCTCCAGGCCTGTCGGCACGACGAGGGTTACTTCGCCAACGGAAGTTATGAAAATGAGGACGAGAACGAAAATACGGAGGATGGATCAAAGGATCCCATATCCTTTCAGCCCATGGGATCAGAGCGGATGGAGATGCGAAAGAGGCAGATGTCGGTGCAGCAGGAGTCGGTGGCGGGGACCACAGCACCGGCGCAGAACGAGCAGCCCGGCCAGGGAAACCGTGCCTCCAACGCCTGCTGCTTCTGTTGGTGCTGTTGCTGCAGCTGCTCCTGGAATGAAGACAGAGATGAGAGGAACCGGAGAGCCTCGTATGACTTTAAAGCAGACGGGGACGCAGACTTCGAGGAAAGtccAAAACCAACTGCGGAGGAGATCTGCCTATGGGGGCAATCCTTCGACAAACTGATGAACTGCCCCTCTGGAAGAAGTGCCTTCCGGCAGTTTCTGCGCACTGAGTTTAGTGAGGAAAACATGCTCTTCTGGTTGGCCTGCGAGGAGTTCAGAAAGGAGGCCAATAAAAGCGTCATCGAAGAGAAGGCTCGAATAATATATGAAGACTACATCTCTATTCTCTCGCCCAAAGAGGTGAGCCTCGACTCCAGAGTTCGAGAGGTTATAAACAGGAACATGCTGGAACCAACATCCCACACGTTTGATGATGCCCAGCTCCAGATATACACGCTAATGCAAAGAGACTCATACCCGCGATTCATGAACTCCCCGGTCTACAAAAACCTGCTCAAGACAGTCTCTGAAACTCAGTCGGTGGAATCTTAGATCTCTGTGATCCCGGTTGAATCCCCCCTCCCCCCTTCCCTAGCTTCGTTTGTTTTCTTTCCTTGTGTAGAATATGTTTTAAAAGGACCTCACTGTGGGTCCTCCCAGGGATTTTACTGCTATAGCGATCtgtacctgaaaaaaaaaaaaaaaagacgctcAGGTCTCCAGGtcactggattaaaaaaaaaaagtctcaaatttCCTGAGGGCTCAACACCACAAGTACTGCTACAGATCAGCATAGCAACAGATGCTCCAAAGGATTATCAGTGCGTTTCGATGTTTTCATGAAAATAATctattttatttgtgttgaagttttttattattaatattattattatttttcattctttttttgtaTCAATGTTTGAAGGAAGATGTGATACCAATTGTgggctatatacagtatatacggTAGATATATTTATGAATTTGTATTACATTTCTTCAACTTTTAGTTTTTCTTGTGTTACAATATTTAACGAAAAGGGAATTATGGGTAACACGTATTGTCCGTTTATGAAAAACTGCGTATGAGAATCAAAAGCTCAAGTCAAGGCAACACTTCAGATCTACTTGCGGTacacagtattgtttttttcagcTGTTTTACACACTACTCCCTGTTTAACGACTTGGCATCTCCAATGAGgaatcaaaattatatatatttttaaatctaataatcgtaataataatacatataaaggGGGAAATATAAAAATTACTAATACATGATCAAAATGTACTAATGATAACAATAACAAAGTGTTGGATAAGAAAAAGatataaaagggatagttcaccccaaaatgtaaacatttggtTATCTTATCTCCAGGCCATCCAGCTAGAAGATTAAGAACGTTTTTTTAATCCAATATTGTGGGGTTtattgattcataaaatgcaaaacaatgaCTACTGGCTAGTGATGCTCGGATGGCAGTTATATCCACAGGTGCTGCAGATAATCTGCAGGtcggataataaaaaaaatacattaagatCAATTGCTGGTGGGTCGCGggttaatgtgtttatttcttaatgatttttgttttgcattttttaatcacatcctgtaaaataaaaatgtgtttataatactttttttatcaGGCAAACGAACCCTAATTTGcaggttaataaaaaaatatgcacgTGGTGGGGGAGATCCATTTGTTGAAGCAGAAAGGGAGGCAAAACCGATCCGATGGAAActtaaaaacaaagaattaaacaGCGTTTTAGCAAAGTGTTTAACAAGGATGAATCAAGTGCTGGGTATGCATTATGCAACAGCTGTGAAGCGTTTTATGTAAAAGAAAGCCACAAGACCGGTACCTCAAATATGAAACATCATGTGTGTGTGCTAAATCGAAAGGCCAGTCAAGTCAAAGTCAGAAAAGCACTTTAAGCTCTTACATTAATcaggactgcaaaaaaaaaaaaagaatactactggaattaaaaaagaattataaaaGTGACAATCGGGTGCAGGTCGGGTGccgatatatacagttgaagtcagaattattagcccccctttgatttttttttcttttttaaatatttccttaattatgtttaacagaccaaggaaagttttacagcatgtccgataatatttttttttcttttggagacagtcttatttgttttattttggctagaataaaagcagttataaatttttttaacaccattttaaggacaaaattatttgcccgtttaagttatatattttttgatagtccttcttttaccctaacctgcctagttaacctaattaagctttaaatgttactttaagctgtatagaagtgttttaaaaaatatctagtaaaatattatttactgtcattatggcaaagattaaaaaatctgttatataaatgtgtgaaaaaaaaacttctctccattgAACAGAAATGGGGGGTTGGCATAAGAATTCAGGATATTAATTCAGGGataatatttcaggggggctaattatgctgacttcaactgtatatcagatATAATTCAGTCTAATCTTacaagaaaacataagtattttacgtggcacctaaccccacccctaaacccaaccgtcattgggggatgaggaaatcgtactaaattgtacaaattaaatcgtacaaatttatacgaattagccacaaagtcaaaaagttacaaaaaattgCGGCGGGTGGATGATTAGTATGAAGCCGCGGATTCGGATAACATTTCAGCtgatccgcgcatctctactACTGGgactttgagagtaaaaaaaacacatacaatacAGGCTAAAATAAATtatggagttaacttgttaacaaaggttcgGCGGCAGAACCAGGCCTCACTTTGTCTCtttaaccaatcacctactctTCGTTTAAATCTCAAACTTATTTAAGGCCGACCAGCCCTTTACCACTGTTCTTTTCATTCTTTTGAACCCACCATCCCTCCCTCTGTCGGGGGATCCAATCACTCTACTGAAATATTACAGAGACAGTACCCCCACTCCGAGTCTCCGGTTATCATCGTAGGATGCCCGATCAACCTACCTTCTACCTACCTGTTCATGTTTATCATCTTTCTTcccttccccttcatcccactgtttTCTTACCATCCCCtacatccctacaataaagtctagctcaaagttTGATGTGGTCCATGCCGTTGAAAATACATCCAAAGACAACTGAAGATATGAAGCCAGATGATCGCTTTGTACTAGATTATTAACATATACAATATTTACTTGTAATATTTATGACATTTAATCTCACAACAGCGCCAATGTCAATTGCATGACAGTAAGTGTTTCAAATGTCCACGTTAGGGTGAATTATCCCTCTAAAAGAAGAGAACAACTGTATTTAATATGAAATTGCATATCTCTGACAACTTTTTCAAACTATGTGATGTGCACTTTGTACTATTAGAAAACACCAAGAGGAAATATCATCCATCTATAAGTGTTTTTCCATATCATAGTATTCATTTATTCCTAAACAAGCAGCTAAGAGATGGTTGGACATGTCGACTATTACATGTACTCAACCTAAAGACCGAAAGCCTCATTTTTACGTACAGTATGTAGTAGTATTATCTTTTACAAGCAAACTCTAATAGAAGAGATTTGACATGTAGGTATTAAACTAGTGTTTTAGATCTAAACAGGAGCCCTGAATGGAAAGGTGCCGATTTTTGTTGCTACCCTCGCAAGTAGACGACACCAAAGGAGTCCAGTAAAACTGTGTGATTAGCTTGTTCTTTCTCCAATACAGCTGACTAGAATTGGAGCTGCCAAGTTCTTACTATATTTTTTAGTTCTGTGAATTACTTTGTTGCCTGACTTTCGTCACTCAAAGACAAGATCCTCACTCGGGGAAGTGCCTTGACATTCAATTTTGTGACATCTCTTCTTTTTTTGGCAATAGTTGGTTTAAACTCTTGCCAAATACAGTACTCTGGGCCTTTGATCAATTCGTGAGTTGAGGTGTCCTGCGTGGCGACTTCTAAATCAAGTATTGCACTTGGTTTGTTGAGCATTTTGGAGAGAAAACACCATTGGTCTTGTGAAGTGCTAAAGTCACACGTTTGAGATAGCGAGTCTGTTTGTTGGCTAGTCGAGTTCAGTTCATTAGGATTGTTGATCTGCGTCCAGACTGTACATCTACCAACATGTATTTCATGGTGGTGCTTCTACTTGTCTTAGactaacttaatattattatgaaatgTGCAATTTGAGCTGATGGATTCACCACATAGATCAACCTCAAATACTATCTAAGCCAATGGTTTGGAGTTATACtgcctatatattttttctttctctctttttgttgttgttctgtaaagtctacaaaaaaaagtgttattttccaatcagtttacattaaattatactttttttctgattAATAATATGTGAATGTTTACAGTAATCAGATTAGTTTTTTCTGTTTTGATGAATTGAGAAAAATAATGATTTGTGGGCATTTGGAATCTTTAAGATACAATAAAGcacaataattttaaaatgtgtgattGTTGTGGACTGCAGGAAAATAACATGTATATGATATGTAAGCTTGTAGGGCATTGGAACTCAGGTTCAAATACATTCGGTGTCTTTTCTTGGGATCTTTTGCCCTTCTCTCACCATTACATTGCTGTCTATTCTACTCATACATGAAGCCAGGAAATCCTAGGAATAAAAATTATGTACAAATACAGTGCCATCTTCTTTTGCAAG

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-128 Orthologous to human RGS20 (regulator of G protein signaling 20).

Ensembl:

ensembl_id ENSDART00000182523

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033863 lncRNA downstream 406227 30329539 ~ 30346274 (-) True XLOC_016470
TCONS_00033862 lncRNA downstream 406234 30329539 ~ 30346267 (-) False XLOC_016470
TCONS_00032407 lncRNA downstream 457584 30292294 ~ 30294917 (-) True XLOC_016469
TCONS_00032404 lncRNA downstream 502755 30248856 ~ 30249746 (-) True XLOC_016468
TCONS_00033861 lncRNA downstream 567864 30183095 ~ 30184637 (-) True XLOC_016466
TCONS_00033374 lncRNA upstream 275995 31060193 ~ 31074986 (-) False XLOC_016479
TCONS_00033864 lncRNA upstream 290210 31074408 ~ 31075713 (-) True XLOC_016479
TCONS_00033375 lncRNA upstream 293656 31077854 ~ 31080324 (-) False XLOC_016480
TCONS_00033376 lncRNA upstream 293656 31077854 ~ 31098639 (-) False XLOC_016480
TCONS_00033865 lncRNA upstream 308551 31092749 ~ 31097703 (-) False XLOC_016480
TCONS_00032414 mRNA downstream 18403 30732886 ~ 30734098 (-) True XLOC_016474
TCONS_00032413 mRNA downstream 30999 30713868 ~ 30721502 (-) True XLOC_016473
TCONS_00032409 mRNA downstream 58759 30554256 ~ 30693742 (-) False XLOC_016472
TCONS_00032420 mRNA upstream 125936 30910134 ~ 30912307 (-) False XLOC_016477
TCONS_00032421 mRNA upstream 125946 30910144 ~ 30912922 (-) True XLOC_016477
TCONS_00032422 mRNA upstream 202798 30986996 ~ 30987538 (-) False XLOC_016478
TCONS_00032423 mRNA upstream 202798 30986996 ~ 31018096 (-) False XLOC_016478
TCONS_00032424 mRNA upstream 227285 31011483 ~ 31018062 (-) True XLOC_016478
TCONS_00032415 other downstream 392 30751977 ~ 30752109 (-) True XLOC_016475
TCONS_00032402 other downstream 502753 30245934 ~ 30249748 (-) False XLOC_016468
TCONS_00032397 other downstream 571282 30181130 ~ 30181219 (-) True XLOC_016465
TCONS_00032392 other downstream 763804 29986258 ~ 29988697 (-) True XLOC_016461
TCONS_00032385 other downstream 985211 29764395 ~ 29767290 (-) True XLOC_016457
TCONS_00032428 other upstream 515072 31299270 ~ 31301354 (-) False XLOC_016481
TCONS_00032436 other upstream 826836 31611034 ~ 31612177 (-) False XLOC_016485
TCONS_00032438 other upstream 826856 31611054 ~ 31612167 (-) False XLOC_016485
TCONS_00032441 other upstream 827836 31612034 ~ 31614289 (-) False XLOC_016485
TCONS_00032442 other upstream 827838 31612036 ~ 31614391 (-) False XLOC_016485

Expression Profile

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