RNA id: TCONS_00032409


Basic Information

Item Value
RNA id TCONS_00032409
length 5933
RNA type mRNA
GC content 0.50
exon number 22
gene id XLOC_016472
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 30554256 ~ 30693742 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gagggagagagcagTCGCTGCCGCCGCcgccgctgctgctgctgtgtcCGTGGCTTCCCACCGCGGTTTTCCGGTCTCCTTCTATACCCACGGGTTTTCCTTGGATACCTAGCGGATGCTATCCTTTCCTTGGCCCTCCAGTGTCGCTTCAGCGTTCAATGCCAGCCTTTGGGAATGATTTCTGTGTGTTGCTCGCTGTGAATATTCGGTATTAATCGGGGAGGGGGAAGCGGAGAAGAGCGTTGTTCCCCTGGACATTATTCGAAGTAATGCCAGTACCAGACCAGCCCTCTGGCACAGAGAACTCCAGCATGTTGAGCCCGGTACTGAACGCCTCCAATGGAGACGGATCTGAAACAGAGACCACCTCTGCCATCTTGGCCTCTGTGAAAGAACAGGAGCTGCAGTTTGAGCGACTGACGAGAGAGTTGGAGGCTGAGAGGCAGATTGTTGCCACCCAGCTGGAGAGATGCAAGCTGGGATCTGAGACCGGAAGCATGAGCAGCATCAGTTCTGCAGATGAGAAGTTTCGCTGGAACAACCAAGACGGACAGAAGGATATAGAGGAGGAGCTCACCACAGGCCTGGAGCTTGTAGATTCCTGCATCCGATCTCTTCAAGAGTCTGGGATTCTGGATTCACAGGAATTCACTGCAGGTGAAAGACCAGGCATCCTCTCTCAGAGTGCTCTGCAGCTCAATAATCAGGAGGGCACCTTTCCCTATCCAGtcagttaccatagcaaccagaCCCTGGCCCTCGGCGACCTGTCGGCCTCTCAGCCGCCTCGCAGTGGTCAGGTGGGAGGAGCCTTACATAGCTATAATCAGGTGACGTCTAATCGTGTTGCCCAGCTGGCTGCCAGAGAGACAGCCGCCCGGGCCCATTCTCGAGACTCCTATGCCCAGAGTCATGGCAGTGCATTCCACATGCCTGACGATCAGCCAACAGTCCCTGTAAACTATTCCTGCGCCACTCTACCAGCTCAGCGAGTGAGCTCTCCCTTTTCCATGCAGGCTTTGGGCTCCCCCTCCAAACTGCAGAGGCTGGGCTCAGCCTCTGACATGCCCAGCTATGCCACTCTGGCGCGGGTGTCGTCGCCCAAGCAGTCCCCCAGCCGGCTGGCCAAATCCTACAGCACGAGCTCTCCCATCAACATGGCGGCGGGAGGAGGGTCGTCTTCTTCACCACTACACATGGCCGGAGCGGGCAATGTCTCCAACTCGTCTCCGCTGCACCAGCTCAGTGCCGCCGTAGGAAGCTACGCCACTCTGTCACCCACCAAGCGTATGCTGCACACCACCGACCAGTACAAGATCTCTCATGATTTGTACGCCAACGCCACACTTCAGAGACCGGGCAGTCTAGCAGGTTCCAGGGGTTCGTACAGCAGTCAGCACAGTCACCTGGGCTCCGAGCTCAGACCCCTGCAGTCTCCCGAGCACCATATCGACCCCATTTATGAGGACAGAGTCTATCAGAAAGCCCCCCTGAGGAACTTCAACCAAGCCCAGGATCCAATGAACCAGTTTTGTGACCAGGTCCTGAACTTTCTGCTCTGTCCCTACTCTCCTGTTATAGCCCCTTCCTCTCCTGGTGTTGACTCCATACCCTTACAGCGCACGGGAAGCCAAAACGCCACTGGGACATTCCCTCGCGCTGGTTACGCCACTGGCCCGGGCGCTTCCACCGCCGACTACGCCAACCCGTACCGCACACTGCAGTTCTGCCCCTCTACAGACTCGCCCTACAGCAAATCAGGACCCGCTCTGCCCCCAGAGGCCACGCTAGTCAGGTCGCCCTCTGTGGACAGCATCCAGAAGGACCCCAGGGAATTTGGCTGGAGGGATCCGGAGCTGCCGGAGGTCATCCAAATGCTGCAGCACCAGTTTCCATCGGTACAGTCCAATGCTGCCGCTTACCTCCAGCACTTGTGCTTTGGAGACAACAAGATCAAATCAGAGATACGGAGGCAGGGTGGCATCCAGCTGCTGGTGGACTTGCTGGATCACCGTATGACCGACGTGCACAGGAGTGCCTGCGGTGCACTCAGAAACCTGGTTTATGGCAAGGCCAACGATGACAACAAGATTGCCTTGAAGAACTGCGGCGGCATCCCTGCACTCGTGCGACTCCTGCGCAAGACAACAGACGTGGAGATCAGAGAGCTGCTCACAGGTGTGCTCTGGAACTTGTCTTCATGCGATGCTCTGAAGATGCCCATAATTCAGGATGCTCTGGCAGTGCTGACCAACACAGTCATTATTCCTCACTCGGGATGGGACACCTCGCCCCTCCAGGATGACCGCAAACTGCACCTGCATTCCTCACAGGTGCTCCGCAATGCTACCGGGTGCCTCAGGAATGTGAGCTCGGCCGGAGAAGAGGCCCGTCGCAGGATGCGGGAGTGTGAGGGTCTGACTGATGCGCTGCTCTATGTCATCCAGACAGCCCTGGGCACCAGTGAGATCGACAGCAAGACCATCGAGAACTGTGTGTGCATCCTGCGGAACCTGTCCTACAGGTTGGCGGCAGAGACGTCTCAGGGGCAGCAGATGGGATCGGAGGAACTGGATGGGGTTCTGTGCACGGATGCCAGCGGGAAGGATGCAGAGAGCTCCGGCTGCTGGggcaagaagaaaaagaaaaagaagagccACGATCAGTGGGATGGTGTTGGGCCTTTTCCCGACTCCAGTGACCCTCCGAAGGGACTACAGATGCTGTGGCACCCGTCCATTGTGAAACCGTACCTCACTCTGCTGTCTGAATGCTCGAACCCGGATACACTGGAGGGAGCGGCTGGGGCTCTACAGAACCTGGCAGCGGGTAGCTGGAAGGTAGGCCCCACCTTAAAGCCTTGGTCGGTCTACATCCGAGCTGCCGTTCGGAAAGAGAAAGGACTTCCCATTCTGGTGGAGCTGCTGAGAATAGACAATGACCGGGTGGTGTGTGCCGTGGCCACAGCTCTCCGAAACATGGCCCTTGATGTTAGGAACAAGGAGCTCATAGGCAAGTATGCCATGAGGGATCTGGTACATCGTCTACCAGGAGGCAACAATAACAACAGTACTGGCACCGGCGGATCTAGCAAAAGCATGTCCGATGACACTATCACAGCGATCTGCTGCGCTCTGCATGAAGTCATCACCAAGAACATGGAGAACACCAAGGCACTTCGTGATGCCGGCGGCATCGAGAAACTCATTGGCATCGCCCGCAGCAAAGGAGACAAACATACACCGAAAGTGGTGAAAGCAGCATCTCAAGTTCTCAATAGCATGTGGCAGTACAGAGATTTGCGGAGTCTCTATAAGAAGGACGGTTATTCTCAGTATCACTTTGTTGGCTCTTCATCTACAATTGAGAGAGACAGACAACGACCTTACTCCTCCTCTCGCACTCCATCTATCTCTCCTGTGCGGACCTCACCCAATAATCGATCAGcaaGTGCCCCCACTTCGCCTCGAGAGATGATGAGCTTGAAGGAGAGAAAGACAGATTACGAGTCTACTGGAAGCAACTCTACTTATCATGGAAACAAAGGCGAGCACACCTCCAGAAAAGACGCTATGGCAGCTCAAATCTCCAGTGGAACATCTACACTGTTCAGAGGTGCTTACATGTCTCCTGCTGATGACATCAAGCATAACCAGGTCTCGGCTCAAGGCAACCCTCCAGAGGCCTACCCTCCCTTCCAGACTCCCCCAGGAGCCAACTTCGAGGAGCCGTACTATGAGGACCAAGCGCATAAAAGGCCCCCGCCCGCCGCAGACGGCACCATGCACCTGGGACTGAAGTCCACGGGGAACTACGTGGACTTTTATTCTGCGTCTCGCCCATACAGTGAACTCAACTATGAGACGAGCCACTATCCTGCCTCGCCGGACTCCTGGGTGTAGGGGCAGGCTGGAGGCGGCTGGCAAACAGACACCAGACCAGCATGTGCATGAACACTAGTAGACATCTCACACTCGTAAACCTTCAGTTCGGTTCACTGCTCGCACCACAGTGGCCGGTGAGCACGGTTAGGAAAGTGCTTGGAGATTTTAAGGAAAGACGCGCAAGGAATGCATTTTACCAAACGGATTGCTTGAACTTTAGCATCGGAGGGAATGGAAGAGGGAAAGCGGAAGATACTATATGTGGCGCAGAGATGGGATAGTTACGTGAAGCACAAGAAAATGACATTCGACACAAGCTAAGGAAGTAGTTTTCACACTTCTTTTGTTTTTTGACATCTCTTTTGGTTACACCATGCTTTTTACGGAGTGCTCCGGTGCACTCTTAGcctttgtatgtttttatttttgggatttctttttattatttgcttgtttttgtacCTCCTTTTTGACTTCTTGAGTCTGGTGTAAAGTACTTGTTGTATATTACAGATGTAGATACAAGGTGCATTGTGTATATTACGCAAAGACTGCAGTGTCCTCCCCACGTGGCTCGATATATATCGTtttattttcctgtattttgaaAGAGAGAACAAAATTCGGTCACTAAACTTCAGCGTCCTGTTTTATGGGTAAGAAATACAGCCGAAAGGTGTTGTTTGCTCTAATGTTATTGGTTTTTTTTCTAAGCGAGGAAATTACTTACTACTGACGACAGAGCATCACTGCCTGGACAGAGTTTACCACCAATAATAAGAACAATTTCAGGCATATCTGTCAGTTctttttctgtcactgttttccAGCTGTACTGACGTAAAGACTGGTCATTCCACGAGTGATCTGTGCTTAGTTATGTGCCAAATGTGGTAATCCCTGAGCCAAGGGGTGCTGTAGAGCTGCCGTTGAAGATACGCTTTAACGACAAGTCACTCGTTCAATCGACGCCCAtttgtaaatgcttttttttatttgaaagatTAAACATGTTCGGACAGCATTCACACTGTTAGAGAAAACGGAGGGACAACGTCTTTGACAGCTACTTCCCCTCCAAAGATGTACAATTAGTTGACGCTGTGTTGTAAAATAGACATTTGCAAAATCTGCTTTTTTTCTTCCAGAAAATCAGTGGTTCTTAAGCTCATCGTAGACAAATCTGTCAATAGAGTAtggatatatattatataaatacaaaatatatatatactttttatgtgCAGATGTGGATGTCACCTAACGCAGAAacattgcaaagaaaaaaaatgctagtttaaaaaaaaaaaagcatagggTTTTGTTCACCTTGATTTCTAACCAGATGTTGACCTCCTGTTGTCATGTTGTTGCTGTGTAAAAGAGGCGAGACCAGGGCTCAGTGAGGGCCGATGTGTTTAATATTGACTTGAAAAGGTGCTAAAACCACGCTCTAACACCTTTTGGCACACACCTTGCTACCTTTTATTAATGCGTTTTGAATGTGCTTCGTGTCCTTAGCAAAATGGATTCCACTAAAACGAATAGCTTCGAATCTAAAAGTAGAGCTGTGTGCGTTTAGACACACCtcttgagttacttttttttcttcttgtaggTAATTGCCTATATCTCAGGTCATCTTATTGCAAGAGAAGATGGGTGAACATTCCTCTTTTGACTGAATGGAGAACAAAGAATGAAACTACCCTGTAATTTTTGGGATTTTTCAAACTGTAAATTTCAAGTCTGGCAGAAAGAGAGGGAAGGTCTGAAGCAAGCCCTGGTCTTTCCTTCATGTCATTTTACACTTAGGTAATTGTCAGATGCAAGGATTCAGGACGATCCCCGAACTCACATATGTTCAGCACCATTGATAGTGAACGTCTAAGAACAAGCAAAATATCTGTGAAAAAGTAGACATATCAGACAACCTGTATTGAAGATgtaagtaaaacttttttttctgttgctagACAAAGTGTTTGAGAGAATTGTGAACCTTTTTAATGCCAGGTTGCAACTGCTATATAAACTAATGGAGAATCA

Function

GO:

id name namespace
GO:0001764 neuron migration biological_process
GO:0098609 cell-cell adhesion biological_process
GO:0007043 cell-cell junction assembly biological_process
GO:0060997 dendritic spine morphogenesis biological_process
GO:0005886 plasma membrane cellular_component
GO:0005911 cell-cell junction cellular_component
GO:0005912 adherens junction cellular_component
GO:0005634 nucleus cellular_component
GO:0014069 postsynaptic density cellular_component
GO:0005737 cytoplasm cellular_component
GO:0045296 cadherin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-532 Predicted to enable cadherin binding activity. Acts upstream of or within neuron migration. Predicted to be located in cell junction. Predicted to be active in several cellular components, including adherens junction; nucleus; and postsynaptic density. Human ortholog(s) of this gene implicated in anxiety disorder; major depressive disorder; and schizophrenia. Orthologous to human CTNND2 (catenin delta 2).

Ensembl:

ensembl_id ENSDART00000090292

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033863 lncRNA downstream 207982 30329539 ~ 30346274 (-) True XLOC_016470
TCONS_00033862 lncRNA downstream 207989 30329539 ~ 30346267 (-) False XLOC_016470
TCONS_00032407 lncRNA downstream 259339 30292294 ~ 30294917 (-) True XLOC_016469
TCONS_00032404 lncRNA downstream 304510 30248856 ~ 30249746 (-) True XLOC_016468
TCONS_00033861 lncRNA downstream 369619 30183095 ~ 30184637 (-) True XLOC_016466
TCONS_00033374 lncRNA upstream 366451 31060193 ~ 31074986 (-) False XLOC_016479
TCONS_00033864 lncRNA upstream 380666 31074408 ~ 31075713 (-) True XLOC_016479
TCONS_00033375 lncRNA upstream 384112 31077854 ~ 31080324 (-) False XLOC_016480
TCONS_00033376 lncRNA upstream 384112 31077854 ~ 31098639 (-) False XLOC_016480
TCONS_00033865 lncRNA upstream 399007 31092749 ~ 31097703 (-) False XLOC_016480
TCONS_00032408 mRNA downstream 93963 30458706 ~ 30460293 (-) True XLOC_016471
TCONS_00032406 mRNA downstream 229646 30292072 ~ 30324610 (-) False XLOC_016469
TCONS_00032405 mRNA downstream 229959 30290719 ~ 30324297 (-) False XLOC_016469
TCONS_00032401 mRNA downstream 304471 30245853 ~ 30249785 (-) False XLOC_016468
TCONS_00032400 mRNA downstream 304510 30245853 ~ 30249746 (-) False XLOC_016468
TCONS_00032413 mRNA upstream 20126 30713868 ~ 30721502 (-) True XLOC_016473
TCONS_00032414 mRNA upstream 39144 30732886 ~ 30734098 (-) True XLOC_016474
TCONS_00032416 mRNA upstream 58759 30752501 ~ 30784198 (-) False XLOC_016476
TCONS_00032417 mRNA upstream 62887 30756629 ~ 30784502 (-) False XLOC_016476
TCONS_00032418 mRNA upstream 62963 30756705 ~ 30770736 (-) False XLOC_016476
TCONS_00032402 other downstream 304508 30245934 ~ 30249748 (-) False XLOC_016468
TCONS_00032397 other downstream 373037 30181130 ~ 30181219 (-) True XLOC_016465
TCONS_00032392 other downstream 565559 29986258 ~ 29988697 (-) True XLOC_016461
TCONS_00032385 other downstream 786966 29764395 ~ 29767290 (-) True XLOC_016457
TCONS_00032358 other downstream 3068947 27484559 ~ 27485309 (-) True XLOC_016432
TCONS_00032415 other upstream 58235 30751977 ~ 30752109 (-) True XLOC_016475
TCONS_00032428 other upstream 605528 31299270 ~ 31301354 (-) False XLOC_016481
TCONS_00032436 other upstream 917292 31611034 ~ 31612177 (-) False XLOC_016485
TCONS_00032438 other upstream 917312 31611054 ~ 31612167 (-) False XLOC_016485
TCONS_00032441 other upstream 918292 31612034 ~ 31614289 (-) False XLOC_016485

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_10944147_11018487.mRNA True 5937 mRNA 0.50 26 CI01000004 10942377 ~ 11018487 (-)