RNA id: TCONS_00032408


Basic Information

Item Value
RNA id TCONS_00032408
length 657
RNA type mRNA
GC content 0.49
exon number 3
gene id XLOC_016471
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 30458706 ~ 30460293 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGATCTCCAAAGAGTGCTCGTTAGTATTTCGGCTCAGGTCTTTCACAGTCATGTTGAGAGCCAGGGAACCGGGCTCTTTGGCCGTGCTGGCCTCCACCCTTCTTATGGGATGCGGAGTGGCGTTTTCCCTCGGACAGAATGAGACAGAACCCGTAGTTTTGGAAGGGAAATGTTTAGTTGTTTGTGACTCGAACCCGTCCGCCGAAGGAGGAGTGACCTCGTCGTTTGGGATATCCGTCCGAGCTGCTGGTGCTAAAGTGGCATTTTCTGCAGTCAGAGGAACTAACCATGAACCGTCAGAAATGAGTAACAAGTCCATGACAATCTACTTTGATCAGGTACTTGTGAATATTGGGAATCATTTCGACCTAAAGGCGAGTGTTTTCCAAGCCCCTCGGCGAGGCATTTACAGCTTCAGCTTTCACGTTGTGAAGGTGTACAACCGACAGACAATTCAGGTCAATCTGATGCATAATGAATATCCAATAATATCAGCGTTTGCCGGTGATCAAGATGTGACCCGGGAGGCAGCGAGTAACAGCGTTCTGCTTCACCTGGAGCGTGAAGACAGACTCTATCTCAAACTGGAGAGAGGAAACCTCATGGGCGGCTGGAAATACTCCACATTCTCCGGCTTTCTTGTTTTCCCTCTTTAA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-591 Orthologous to human CBLN2 (cerebellin 2 precursor).

Ensembl:

ensembl_id ENSDART00000113193

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033863 lncRNA downstream 112432 30329539 ~ 30346274 (-) True XLOC_016470
TCONS_00033862 lncRNA downstream 112439 30329539 ~ 30346267 (-) False XLOC_016470
TCONS_00032407 lncRNA downstream 163789 30292294 ~ 30294917 (-) True XLOC_016469
TCONS_00032404 lncRNA downstream 208960 30248856 ~ 30249746 (-) True XLOC_016468
TCONS_00033861 lncRNA downstream 274069 30183095 ~ 30184637 (-) True XLOC_016466
TCONS_00033374 lncRNA upstream 599900 31060193 ~ 31074986 (-) False XLOC_016479
TCONS_00033864 lncRNA upstream 614115 31074408 ~ 31075713 (-) True XLOC_016479
TCONS_00033375 lncRNA upstream 617561 31077854 ~ 31080324 (-) False XLOC_016480
TCONS_00033376 lncRNA upstream 617561 31077854 ~ 31098639 (-) False XLOC_016480
TCONS_00033865 lncRNA upstream 632456 31092749 ~ 31097703 (-) False XLOC_016480
TCONS_00032406 mRNA downstream 134096 30292072 ~ 30324610 (-) False XLOC_016469
TCONS_00032405 mRNA downstream 134409 30290719 ~ 30324297 (-) False XLOC_016469
TCONS_00032399 mRNA downstream 208395 30244376 ~ 30250311 (-) False XLOC_016468
TCONS_00032401 mRNA downstream 208921 30245853 ~ 30249785 (-) False XLOC_016468
TCONS_00032400 mRNA downstream 208960 30245853 ~ 30249746 (-) False XLOC_016468
TCONS_00032409 mRNA upstream 93963 30554256 ~ 30693742 (-) False XLOC_016472
TCONS_00032410 mRNA upstream 95994 30556287 ~ 30668580 (-) False XLOC_016472
TCONS_00032411 mRNA upstream 119552 30579845 ~ 30611389 (-) False XLOC_016472
TCONS_00032412 mRNA upstream 157918 30618211 ~ 30659222 (-) True XLOC_016472
TCONS_00032413 mRNA upstream 253575 30713868 ~ 30721502 (-) True XLOC_016473
TCONS_00032402 other downstream 208958 30245934 ~ 30249748 (-) False XLOC_016468
TCONS_00032397 other downstream 277487 30181130 ~ 30181219 (-) True XLOC_016465
TCONS_00032392 other downstream 470009 29986258 ~ 29988697 (-) True XLOC_016461
TCONS_00032385 other downstream 691416 29764395 ~ 29767290 (-) True XLOC_016457
TCONS_00032358 other downstream 2973397 27484559 ~ 27485309 (-) True XLOC_016432
TCONS_00032415 other upstream 291684 30751977 ~ 30752109 (-) True XLOC_016475
TCONS_00032428 other upstream 838977 31299270 ~ 31301354 (-) False XLOC_016481
TCONS_00032436 other upstream 1150741 31611034 ~ 31612177 (-) False XLOC_016485
TCONS_00032438 other upstream 1150761 31611054 ~ 31612167 (-) False XLOC_016485
TCONS_00032441 other upstream 1151741 31612034 ~ 31614289 (-) False XLOC_016485

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_10884499_10886045.mRNA True 657 mRNA 0.47 3 CI01000004 10884426 ~ 10886045 (-)