XLOC_016555


Basic Information

Item Value
gene id XLOC_016555
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 36076196 ~ 36078638 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033881
GCACCCTTAATGCTGTAGGTCACTGGTGTCCTGATGTTGATCAATCAAGGTGAATACGTCCATGAATGAGGTCAAAAAGAAGGAATGAGAGACAACCCAATGTATGAAGAACAGAAAAGACTTCCAAGTCTGCATATGAGgacgtttattttattaaaggcaTAGCTGATTCCAGCGTTTACAAGTGTCCACGAAGAGACAAGAACACAATAAATCAAGCCCATTATAGAAGGAGATATCCTCACCCCCAACTATTCCCTGACAAAAtactctaaaaaacaaaacaaaaaaagcttgaCTGGATATCTCCCTCATCCAAAATACAAGGCATTCTGAAAGATGGATTTCATGCAAAATTTCAGGAGTGGCAGACTGAATTTAAGATTGGGACAAACCTTCTTAGTGGTAACTAAATCGACTGTAAAAAGCTGGCTGTTATTTTTTAGCTATTGGAATGTTATTATTACGACCCAAAGGCGCAAGGCTGTTGTCCTGTGATCAGCATTGTAATGTACATCACTACGGAAGCCACAATTAAAAGATGGATAAAGGACAACAGGGGGGGAATCCACATTTTACAATGCagggtttggaaaaaaaaagcacattcaCACAAGACCACCACAGGTCCGTCCAAAATAAAAGAATGTCAATGCGTCCacagcaaccaatcagagcacaggcTTCTGAAACTCCTTGCTAAACGATTCTAAAACAAAAGATGAACAGAACAGGATACGCAGTTCCCTCAGAACAGTTTCTTTCCCAACCAAACTCATCCTTTAAGGTTCCATGTAATTATTTATTCCTCTATTTTTTATACGATTTTAAATGCAACAAGAGAAGCACAATCACACGGCAAATAGACACATTATTTAAAGTTCGTCTTTAATAAAATGTTCTctactcaaaaataaaaacacgCTTTATTCTCATCCGTTAGTTGTCAAATCAATATGACCTTGAAGAGAAAAAAGGCTGCAAGCAGGGGATCTGATAATGTGACTGTAAAAAATAAGTCACATGACACTATCCTGATGCAACCATCGATATAGGTTTTCAGAGTAAAGCAGTAATCGGGCTAGCgttcttcctcttttttttttcttttttctttttcttttttagtgcTTTGAGCGTAACGGGTGCTTGGGAAAGCATCCTTTCGAAGGTACGTTGTTAATATAGAATACAGTGGAACTGGTACCTGGAAGTAAATTCAGTGTCTGTGAgcttgctttgctttgctttaggAAAAACAGGCTTCCCTTTCTTTACCATCAAGCAGTCGCTGCTGGACCCGGTCGCCTCGTTTTCCTCAATCTTCCCTACAGTACCAACCGTGATTGCGATGCTAACGATTCCTTAAAACAAAAATAGAGAAAGAACAACAAAAAGGAAGAGAGAAAACACAGACCAGGCACAAAGAGAGCGAATAAAgcttaaaactattaataaaaaggCAGAACATGAACGAAAGAAGCCATTATGCTTTTAAGCAGGAGAATAAAGAAAcaaggagaggaggaggaggagggagaaggggaGGCACACATTTATATCGAATGAACTCCCCCGTTAGCAGTAAACTATCGAACATATTTACCGAATAATAATTCAGAGAGCTAAAACTGCTACAGAACAAGTCACAAAATACAGTATTGTTAATAATTGCAGTCTCTATTGCAGCTAATGATACTACATCCTACATCTATAGTCTAACCTCCAACTCCGCTTGATACTGATTGAGCTATAATGTCGCTAGGAGCTTCATAATGGTTCGAACTTTTATCTGTCCTGTTTACCGAACTTTTCTTACAAAGTCGAAAGACTGTACATCAACGCCACCATGATCCATGCCTGCGTCAATCTAAATCCTAATATTGGAGCGCATATTCGCATAGTTAATGCCGATCACATCGTCATCCTTCATTCGTctgcttcattttttttctcccaattcTAAACAGTGACACGAATCCCTCTGAGAAAGTGAGACTTGGAGACAACGCAAAACCAGTCCTTccttcgttttcttttttttttttgtccatcgtAATACCACGTCTGTCGTCGATAAACATCCCGACGCGCACGCACCCAACCCCTCCATGCGCCGGTCGCAATGTAAGCAGGTGGCATGAGGGCATCTAGTCCAGAGTCTTAAGTCCAGATGAGACAGGAGAATGAACCTTAGACCCCCAAAGGAAGCGAGGTGGCAATCAGAGAGAGATGCAGCCCCTCAGAGTCAGTGTTCGGCAGCGGCTACGTGCTTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033881 True 2276 lncRNA 0.41 2 36076196 36078638

Neighbor

gene id symbol gene type direction distance location
XLOC_016554 nmnat2 coding downstream 35376 36026183 ~ 36040820 (-)
XLOC_016553 NA coding downstream 342444 35728589 ~ 35733752 (-)
XLOC_016552 NA coding downstream 454329 35615395 ~ 35621867 (-)
XLOC_016551 tnn coding downstream 509086 35509418 ~ 35567110 (-)
XLOC_016550 pappa2 coding downstream 973127 34986201 ~ 35103069 (-)
XLOC_016556 tradv1 coding upstream 108542 36187180 ~ 36187673 (-)
XLOC_016557 tradv2.0.1 coding upstream 110948 36189586 ~ 36189919 (-)
XLOC_016558 tradv3.0.1 coding upstream 112169 36190807 ~ 36191279 (-)
XLOC_016559 tradv4.0.1 coding upstream 114708 36193346 ~ 36193896 (-)
XLOC_016560 si:ch211-106g8.62 coding upstream 116947 36195585 ~ 36196119 (-)
XLOC_016546 NA non-coding downstream 1968211 34106830 ~ 34107985 (-)
XLOC_016543 NA non-coding downstream 2149417 33843402 ~ 33926779 (-)
XLOC_016542 NA non-coding downstream 2291006 33782659 ~ 33785190 (-)
XLOC_016619 NA non-coding upstream 300601 36379239 ~ 36425603 (-)
XLOC_016633 NA non-coding upstream 668540 36747178 ~ 36826293 (-)
XLOC_016635 NA non-coding upstream 808105 36886743 ~ 36905394 (-)
XLOC_016638 NA non-coding upstream 854061 36932699 ~ 36933692 (-)
XLOC_016643 NA non-coding upstream 1058030 37136668 ~ 37140483 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G33438 NA non-coding CI01000004 null 14429309 ~ 14429405 (-)
bowfin (Amia calva) G149859 NA unknown CM030141.1 CM030141.1 12679670 ~ 12727903 (+)
mexican tetra (Astyanax mexicanus) G139298 NA non-coding NC_035912.1 CM008315.1 6437618 ~ 6443166 (+)