XLOC_016749


Basic Information

Item Value
gene id XLOC_016749
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 42719037 ~ 42771978 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033921
CGCGAATGCACAACAAACTGAAACGCGACCACGCGGGAAATCATAACTCCTTACAGTCACAATTCTGAAAATGGTGTATCTGCTGTTGCCTGGCAACAAGAAGAGGACCCCTCCCCCACCATTGTGCAGCTGttttggatgtgtgtgtgtgtattccagCAGATGGCAGTCCATATTGATCATCTTTTATGCTATTCTTAATCACAAATCCAGAATCTGTTATCACATTTCCTGTGGCAGGAGGAGGGAGGAGCTTAGGATCCATTGGCCTTTCAGCGGCCGGATCACCACTCAGGACCACAGCTGCAGCTGCGTCACCATGGAGATGCAGTCAGCCAATGACAGCCGGCAATTTTCCCTCCAGGGACCCTGCTGATTCGAGCTGGGGTGGGGGAGCATGGGGGCGTAAACAGGAAGAACAAAAAACAAGAGACAGGTGGGGTCAGTGGGAGTCTGGCCTCTGATTGGCTGGTGCCATAGGAACCATAGGAGAGCTGTCATTTTGGCTCATTCATACAGTTCCTCTACCCAGAGAGATTCCATGATGACACACAACACCAAATCAAGGAATCTGAGCTGATGGTTACCCATAGGAAATATTGATTATCTGGAGCCTACATTTATGTTTGGAGGACACTTTTACCAAAGCAACC
>TCONS_00033922
GTGAGGAAATGAGTGAGTAAACAACTGGTTTAGATTTTGCAGGTGGAACACCTACGTTTAAACAATTAGCattaacagccaatcagaagcctTCCTGCTTGAAAGACCGCGAATGCACAACAAACTGAAACGCGACCACGCGGGAAATCATAACTCCTTACAGTCACAATTCTGAAAATGGTGTATCTGCTGTTGCCTGGCAACAAGAAGAGGACCCCTCCCCCACCATTGTGCAGCTGttttggatGAGGAGGGAGGAGCTTAGGATCCATTGGCCTTTCAGCGGCCGGATCACCACTCAGGACCACAGCTGCAGCTGCGTCACCATGGAGATGCAGTCAGCCAATGACAGCCGGCAATTTTCCCTCCAGGGACCCTGCTGATTCGAGCTGGGGTGGGGGAGCATGGGGGCGTAAACAGGAAGAACAAAAAACAAGAGCAAGTGACCGGTTGCTATGGGATCAGAGGCTTGGCGACCGTTACTAAGGCCCAAAGGCAGTCACACATGAACCCAGTCACCCAAAGAGAAGAGACACGGACAGATAAAGGGAGcctatatttaaacaaataacctCAAGTGTATATTGGGATTGGAATTCTAGAGAAATATGGTGAATTagattgttcatttattattttataattaaaatcttCAACATAATctgaaaatatacagttaaagtcagaatctTTTCCccttagaattattagcccccctgtatatttttcccccaatttctgtttaacggaaatacaatttttcaacacatttttaaacataattgctTGTGTAGatagccggaaaaaaaaaaatcttaagagggctaatcattttgaccttaaaatgttttaacattttttttaaactgatttaattctagccaaaattaaacaaataagactttctccagaagaaacaaga
>TCONS_00033396
ttggatgtgtgtgtgtgtattccagCAGATGGCAGTCCATATTGATCATCTTTTATGCTATTCTTAATCACAAATCCAGAATCTGTTATCACATTTCCTGTGGCAGGAGGAGGGAGGAGCTTAGGATCCATTGGCCTTTCAGCGGCCGGATCACCACTCAGGACCACAGCTGCAGCTGCGTCACCATGGAGATGCAGTCAGCCAATGACAGCCGGCAATTTTCCCTCCAGGGACCCTGCTGATTCGAGCTGGGGTGGGGGAGCATGGGGGCGTAAACAGGAAGAACAAAAAACAAGAGGTGGGTGGATAGTGACAAATGAGAGCCTGTGTGTGCGAGCATGtgcaggtatgtgtgtgtgtgtgtgtgtgagcatgtgcagGTATGTGTGCTCTTTCAGCTTTCTTTAGGTAGGCGGAGTTTACAACGTATGCATTTGAGTCTGTTGCTAGGCAAGACCGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033921 False 653 lncRNA 0.49 5 42719037 42771871
TCONS_00033922 False 922 lncRNA 0.41 5 42756891 42771978
TCONS_00033396 True 460 lncRNA 0.50 2 42759553 42764475

Neighbor

gene id symbol gene type direction distance location
XLOC_016748 NA coding downstream 1311 42713799 ~ 42717726 (-)
XLOC_016747 NA coding downstream 8608 42708669 ~ 42710429 (-)
XLOC_016744 myo10 coding downstream 13753 42605252 ~ 42705284 (-)
XLOC_016746 NA coding downstream 40655 42678023 ~ 42678382 (-)
XLOC_016743 NA coding downstream 121444 42595924 ~ 42597593 (-)
XLOC_016750 adcy8 coding upstream 4246 42776224 ~ 42871286 (-)
XLOC_016751 NA coding upstream 163903 42935881 ~ 42936238 (-)
XLOC_016752 oc90 coding upstream 170574 42942552 ~ 42960353 (-)
XLOC_016753 BX511268.2 coding upstream 190250 42962228 ~ 42962344 (-)
XLOC_016754 NA coding upstream 190884 42962862 ~ 42978612 (-)
XLOC_016727 BX663525.2 non-coding downstream 735281 41972537 ~ 41983756 (-)
XLOC_016755 NA non-coding upstream 209226 42981204 ~ 42986970 (-)
XLOC_016763 NA non-coding upstream 606124 43378102 ~ 43379093 (-)

Expression


Co-expression Network