XLOC_016754


Basic Information

Item Value
gene id XLOC_016754
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 42962862 ~ 42978612 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033398
AGCAGtaagaaaaacaagacaaactaATATAAGGACCTGTGTTCAGACAGTGATCTGTCAAAGCTGTGGGAGATGGACTCTGTTACACCTCTGTTTAACCAGACCATCACAGAGGAAATCGCCAGAGGTAATATGACATTTCCACTCCTGCCCTTTGTGTGGCATGACCTTTCAAACAACAGTGATTTGGTGCAATGGCCTAAAGCCAGTACAGACTCCCACAGGACTGCCAGTACAGATGCCCACAGGAGCACAGtatCAACTAGCAACTTACCATTGACAACCACTGATGCAACAGTGACATCATCAACCCCTATAGCAGCTCTTCCAACTAGTGCCACTGTAAAAACCACTACAACGACTCCTATGCCAACCACACCCACTAGTGATCTTACAACAGCTGGGACGAGCCAACCAACACCCGATTTTATAACATCAACAAAGTCCAGACCCAGGACTGAAGCCACTGTAACCACACACACCATCACTTCCAGGGTGACCATGACATTTCCACAGCCAACTTTGAGAAGAACCACGACAAGCATCCAGCAGCTCACTAAAGCATCCCATACTGAAAAACCAGGATGCCCATGGAGAAGAGAGCTGCTTCATCAAGAAAGTGAGAAAGAGGACCTAAAGGAGACCCCCGAAGAGGAGCTGTCGTGGGGCAGAGCGACCATCAGCTCGGTGAAGCTGCAGCCGTGTGTGTTTGAGCTGTGCAAGTTTTACTCTCAGTGTGTGTGCAGAGGATTCAGCCACCGAGCAGCAGCTTTACAGCGaTACTGTGTGGACAGTCACCGATGGTATGAGAGACATACTGCAGAAGTCTGCGGTCGGATGAGGAGAATCACCTTTTCCAGAAatCTGAAGCAGAAATGTCTGGCAAGAATGTGTGTGAAGATGTAAGTCGAGGTGACAGACATCTGAACTGAAGagcgtgtgtgtttatgtatgtgtgagaGAAACAGCTCTGTAAAACACCCCAGTGAATCTGAGCAGTGTGTAAATCTGTAGTGTCCAGATTTTACTTTCTCTATGAACATGAATAAAACCAAACATATTTACCTATGCCAGATTTTTCATTTGGAACTACACTACAagcaattaaattatataaaaaactcaagtcaaatcaatcaatcagtctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatccatccatccatccatccatccatccatccatcca

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033398 True 1280 lncRNA 0.44 7 42962862 42978612

Neighbor

gene id symbol gene type direction distance location
XLOC_016753 BX511268.2 coding downstream 518 42962228 ~ 42962344 (-)
XLOC_016752 oc90 coding downstream 2509 42942552 ~ 42960353 (-)
XLOC_016751 NA coding downstream 26624 42935881 ~ 42936238 (-)
XLOC_016750 adcy8 coding downstream 91576 42776224 ~ 42871286 (-)
XLOC_016749 NA coding downstream 190884 42719037 ~ 42771978 (-)
XLOC_016755 NA coding upstream 2592 42981204 ~ 42986970 (-)
XLOC_016756 kcnq3 coding upstream 22900 43001512 ~ 43010396 (-)
XLOC_016757 kcnq3 coding upstream 35767 43014379 ~ 43083755 (-)
XLOC_016758 lrrc6 coding upstream 119625 43098237 ~ 43124747 (-)
XLOC_016759 ftr13 coding upstream 149750 43128362 ~ 43130930 (-)
XLOC_016748 NA non-coding downstream 245136 42713799 ~ 42717726 (-)
XLOC_016747 NA non-coding downstream 252433 42708669 ~ 42710429 (-)
XLOC_016763 NA non-coding upstream 399490 43378102 ~ 43379093 (-)
XLOC_016764 CABZ01058723.1 non-coding upstream 530890 43509502 ~ 43517018 (-)
XLOC_016766 NA non-coding upstream 588533 43567145 ~ 43571760 (-)
XLOC_016770 NA non-coding upstream 651141 43629753 ~ 43630083 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000152_00427482_00437720 NA coding CI01000152 null 427163 ~ 440542 (-)