XLOC_016766


Basic Information

Item Value
gene id XLOC_016766
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 43567145 ~ 43571760 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033925
GAGGAGGAAGGGTGAGGCTGTGCTGCAAACCCATCTCGCAGTTCACCgaccacacacacattttacactCACACCCGGACTGGGGACACGCCGAGAAGGGCGAGCTGGACTCTCTGCCCTAGTTCAGCCATTTATTACCAGCATTATCCACTATTTGACTCTTTTATGCAAGAGAATCGAGCGTTTTTGTACTTTTCAACCAGCTGTTGATTCAAAGTGGACCACGGAAACAAAGCAGACACGGCAACCGGACTGCTGGACCAAACGCGACTTTCCCTGGCAAATGTGGTTTTATTTGTGATTTTCTTGGATGAATCACGCGTGTTAAGATggaatt
>TCONS_00033926
GTTATTTCCTGTGGGAGGAGGAAGGGTGAGGCTGTGCTGCAAACCCATCTCGCAGTTCACCgaccacacacacattttacactCACACCCGGACTGGGGACACGCCGAGAAGGGCGAGCTGGACTCTCTGCCCTAGTTCAGCCATTTATTACCAGCATTATCCACTATTTGACTCTTTTATGCAAGAGAATCGAGCGTTTTTGTACTTTTCAACCAGCTGTTGATTCAAAGTGGACCACGGAAACAAAGCAGACACGGCAACCGGACTGCTGGACCAAACGCGACTTTCCCTGGCAAATGTGGTTTTATTTGTGATTTTCTTGGATGAATCACGCGTGTTAAGACAGCCATTGCGATCAGATTTTTTCTACTTTGAAGTTCAGAAACTTTCCatcagtgtgacaacagctgcgatgagcgtcaatccaagaactAATAGGAGCGCCGAATTTGATGACTTGATTTTTGcggcagtctgacatgctacaatcattcaatattataaaaaaatcacgCGGTGTGAGCCGGCCTTTAAGTAAcgactttccaaata
>TCONS_00033927
AAAGTGATTCAAATCATTCGAATCAATTTGACGACTCATTTGAACCAAAACTTTTTGTTCGAATCGTTCGTCCTGTGAATTGGGTGTAACGTTATTTCCTGTGGGAGGAGGAAGGGTGAGGCTGTGCTGCAAACCCATCTCGCAGTTCACCgaccacacacacattttacactCACACCCGGACTGGGGACACGCCGAGAAGGGCGAGCTGGACTCTCTGCCCTAGTTCAGCCATTTATTACCAGCATTATCCACTATTTGACTCTTTTATGCAAGAGAATCGAGCGTTTTTGTACTTTTCAACCAGCTGTTGATTCAAAGTGGACCACGGAAACAAAGCAGACACGGCAACCGGACTGCTGGACCAAACGCGACTTTCCCTGGCAAATGTGGTTTTATTTGTGATTTTCTTGGATGAATCACGCGTGTTAAGGTAAGGAGGATCAATTACCTATAGACTTTCGTGTCATATCTGTTTGCTGAATTGACTATTTTTAGGTAAACCAGTGATCATTAAAGGGTTTGATCTGGAAAAGTGGTTTAAGGTTAGGAACTTTGGGTGGGGATGTCCTGATCACTTCAAAGAACAGGCGCAGATCTGCTCATAACGTGATTCACAGACAGTGTCCCTCCAGGCTATGTGTTTCCCAGACCGCCTGTTATCTCGGATCTCTCTGTCGCGTCTTCTGTGTCCCCGACATCTGTTGTAATTCGTCTGTTCCAGGCCTCAGAGGGTCCGAGGGGGGCTGTGGTGTTTAACTGGCCCTTGAACAATGCTTTATTTGGAAGTTGCTTGAGTAAATATGCCTCTCTGGGAGGTGAAATGATGTAGCCGCGTTTTGTGTGACTCATGGTCCTGTTTGGGACGGGAAGCATTAGAGCACACTATGATGCGGTGGATGTGATGATGGTATTATTTTGTACAACAACGCTTTATATAGGAGAAGTTTGGGAATAGCACTGGACCAGGACTAAGTATAACTGCATTTTATCTGTGGTAAAGCGCCATGTGATGTGTTGGGAGTATCACAGACAACACCACACCAGTGTGAAATGCTCTAGAGCCAAGTTTACAAGCAAAGATCCCGCAGTGATCTGCATTAAAAACTCACATCCTACATATTCAGGTCACGTGACTGCGTGGAAGAATGTTGTTGTAGTTTTTCTGCCGGATGTGTATTCAGTTATTTGTTTGCCCTtaagtttaaagtaaattaaTAGTCTTTTTGTAAAGTTATGCACATGGTTACAGTCCTATTAGTGTTATAATAAAAGAAGATTTGATGTAGGCTACTGGTGTTTTTATTGGAATAACAGCAGGCCATTACAATGTAAATACAACAGATAAAAGTATAGTACAAACAATACAGAGATTACTTTATTGCCGTAAGCGATACATGACAGTTTAAAAGAAGTGTTTGAgcaatgtttatttctatagtgcttttacaacgtagattgtgtTAAAAGCAGCTTAtcataaaagttctagtaaactgaagctGTGTCAGTCCGGCTTTCAGTGTTTGAGTTCGGTTTGGTGTGGTTTAATTTCACTGCTTAAAGTCTAACAATAGTATAGCAAAAAGGAAGAAAGTAATTATTGTATTGGTGTTATTGGTGAAGTTTGGCCCCCCTCGACGGGGCATCACGTAACAAGCTGGATGTTACCTTTGGTTGGAAACTTTTTGCTTGTTAATTAATAACTGGCTATATTAGAAACGGCGTTGGTGTGTGAAAGCTTTCATGGTGCAGTAGATtagcaaacactaaaacaaaaaatgacaTACTCATggataggcatgggctggtataagtttgtgatggtatgataaccttgaataaaaatatcacggtttcacagtattgtgattactgctctaaaataatgttttaattgtCTTAATTCAAACAACACACTTTTTCCACATTAAACCCAATATACAGTATTTCACTtaagaattttttatattttgtagttTGCAGTAAACCCACTTCTGCTGGGTCAATTATTTTACAATCACAGGTTTCTTTataacacataaaacaaaacctctacatataccttaggaaag

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0016071 mRNA metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006396 RNA processing biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0010467 gene expression biological_process
GO:0048024 regulation of mRNA splicing, via spliceosome biological_process
GO:1903311 regulation of mRNA metabolic process biological_process
GO:0043484 regulation of RNA splicing biological_process
GO:0008380 RNA splicing biological_process
GO:0005634 nucleus cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0036002 pre-mRNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033925 False 337 lncRNA 0.48 2 43567145 43571656
TCONS_00033926 False 553 lncRNA 0.46 2 43568074 43571670
TCONS_00033927 True 2075 lncRNA 0.40 1 43569686 43571760

Neighbor

gene id symbol gene type direction distance location
XLOC_016765 CABZ01058721.1 coding downstream 21803 43537846 ~ 43545342 (-)
XLOC_016764 CABZ01058723.1 coding downstream 50127 43509502 ~ 43517018 (-)
XLOC_016763 NA coding downstream 188052 43378102 ~ 43379093 (-)
XLOC_016762 crema coding downstream 370550 43159171 ~ 43196595 (-)
XLOC_016761 ftr12 coding downstream 415787 43144938 ~ 43151358 (-)
XLOC_016767 itgb1b coding upstream 5534 43577294 ~ 43583896 (-)
XLOC_016768 epc1b coding upstream 13811 43585571 ~ 43605556 (-)
XLOC_016769 itgb1b.1 coding upstream 47795 43619555 ~ 43635777 (-)
XLOC_016770 NA coding upstream 57993 43629753 ~ 43630083 (-)
XLOC_016771 itgb1b.2 coding upstream 67223 43638983 ~ 43653328 (-)
XLOC_016755 NA non-coding downstream 580175 42981204 ~ 42986970 (-)
XLOC_016754 NA non-coding downstream 588533 42962862 ~ 42978612 (-)
XLOC_016753 BX511268.2 non-coding downstream 604801 42962228 ~ 42962344 (-)
XLOC_016786 BX323035.1 non-coding upstream 951096 44522856 ~ 44524381 (-)
XLOC_016787 NA non-coding upstream 990254 44562014 ~ 44563193 (-)
XLOC_016791 CR788281.2 non-coding upstream 1191322 44763082 ~ 44763375 (-)
XLOC_016792 CR788281.1 non-coding upstream 1202515 44774275 ~ 44774595 (-)

Expression


Co-expression Network