XLOC_016768 (epc1b)


Basic Information

Item Value
gene id XLOC_016768
gene name epc1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 43585571 ~ 43605556 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032874
ATGAGTAAACTGTCGTTTCGGGCGCGGGCGCTGGACGCTTCCAAGCCTCTACCCGTCTTCCGTTGCGAGGACCTGCCCGACCTGCACGAATATGCGTCTATTAACCGGGCAGTGCCACAGATGCCCACGGGGATGGAGAAAGAGGAGGAATCGGAGCACCATCTCCAGCGGGCCATCTCTGCCCAGCAGGTTTACGGGGAGAAGAGGGACAACATGGTGATTCCTGTGCCAGAGGCTGAGAGCAACATCGCCTACTATGAGTCCCTGTACCCGGGAGACTTTAAGATGCCCAAACAGCTCATTCACATACAGCCGTTCAGTCTGGACACAGAACAGCCGGATTATGACCTGGACTCTGAGGATGAGGCGTTTGTAAATAAGCTGAAGAAGAAGATGGATGTGGGGGCTCTGCAGTTTGAAGAGATGATAGACCGGCTGGAGAAAGGCAGTGGACAGCAGCCTGTGACTCTGCAGGAGGCCAAACTGTTGTTGAAGGAGGATGACGAGCTGATCAAGGAGGTGTTTGAGTATTGGAGCAAAAAGAGGAAAACATGTCAGAGCGGCTCTCTCATCCCTGTCGTCAAACAAGAGAAGCGTGACGGATCCAGCACCAATGACCCGTACGTGGCCTTCAGGCGCCGGACAGAGAAGATGCAGACACGAAAGAATCGTAAGAATGATGAAGCTTCTTATGAGAAGATGCTGAAGCTGCGTAGAGACTTAAGTCGTGCCGTCACCATCTTGGAGATGATTAAGAGACGAGAGAAGAGCAAGAGAGAGCTGCTGCACCTCACGCTGGAGATTGTGGAAAAGAGgaaCAACATGTCTGATTTTGGAGGGGAGGTGATGGCAGAGGTTCTGGCTCAGAGAGCTCTGGAGAAACCAGTCATCCCTCTGATACCAATCACAAACAGCACCCAGTACAGACACACGGAGCATGACCGAGACTACAAGATCAAgATGGATAAGCCAGAGGTTGTACGGCAGAAGCGCAAGTATGAGAAGAAGCCAAAGCCGTTGCCATTGGCAGGCTCCGTACACTCAGGCCCGTCAGTCTTTAACACTAAAGACCTCAATCAGTACGACTTTCCCAGCTCAGACGACGAACCCTTCTCACAGATGTTCTCTGGTTCTTCAGAGGTGGAGGAGGAGAACGATCCGGATGGTGTGTTTGGGTTCAGGAGGAGAACAGGCTGTCAATATCACTCTGCACGTTCGGGACCTGTAAGTGGTTGGCCCTGGTCAGACCCTGCTGAGGGTGGGGTAGCAGATGTGCGCTATCGCTATTCTCTAACCACACTCACAGTCCCGCGCCGATGCCTGGGTTTGGCACGGCGACGAGTGGGAAGAGGGGGCAGGGTTTTATTGGACCGAGCCCACTCTGAATGGGATACTGTGTATCATGGGCTGGACCCGGATTCTCCTGCATTCCCATCACTGTCTCCCACCCAGCAGCAGCCCAGCACAGATACCTCACACACCAGCACAGATACCTCTGCCCCCTCCGCCACTCCACCTGACCTCACGCAAATCCTGCTCAACATCAAAGCCTGCCGCTGGAGGCATTTCAAGCCTCGGACGGCACCGCCAGATGACCCTGACAATCCTGAGCACTGGTCCACACGGAGGCCCCGCCGCGGCTTCCTCATCCGCCCAATCCGCACGCTTCAGACGCAGAGAGGCCCCGCCTCTATTAGACCACCTCCCCCTCCACCCACACCGGctTTCACCGCAGAGCAGTATCAGCAGCACCAGGAGCAGCTTGTACTGATGCAGAAACAGCAGCTTGAACAAGTTCAGCAGCATCAGCAGACCGGCAGCTCTGCCGTCACCAACAACCCACAGAGTTTGGTGTCAAAGACGATAGACGCTGCCAGCGCTCAGTTTGCTGCATCTGCATTAGTAACTCATGAGCAGCTGTTGGCGCTCAAGAGTAAAGATGAGGGAGTTGGTGTTAATGGAGTCGTCTCAGCATCAGGCGTCTACAAGGGCTTACATCACACGAGCTCTGCGGTGTcgtccatccttccatctgtcGGCTCTACCTCCACCTCTTGCCCCTCCCCCACCATCGCCACCACCACTAACAACGGCACCTCCTCGGCCAATCACCATGTGGGCCCGGCTGGCCCCGCCCCTGGCCAAGCGCTAATGGGCGGGGCCGTGCGAGTGAGCGTGCCATCACCAGCAGGCACCCTGAGTGTGCGCCAGCTGCAGCGCCAGCTCACTGTTCCCGCCTCAGCCCTAAAACTCGCTGCCAACGCCAACAGACCGCTCCCAAAGGTCACCACAGGGTCAACTACCCTCGACATGGGGCCCAGGGAGAATCACGATCAAGAGAAGCCTCCGTTGAACAGTCTAACAGAGAACACAGTGGCGATGGAGGTGACGTAGCGCTGCTCTGTGTCCACGCGTCTCCTTTAGGTGCTATGCATCGTAGCGACGCTGTTTTCATGGCAGCCGTTGGGACTTAATTGCAATGCtcatcttttttttgttgttttctttcttttttttctgaaattttgTTACTGTTAAATATCAACATCTGTAAATTATGAGATATGGAAAATATTCTATGTACATACATATTTGTAATACACCCCTCCCCCCCTCCCCCACTTGTATATAACATTACTTGAATACAGAATTCATTTGTGATGTTTTGCACttgggaaaaaaaatctgaaaaaaaagaacTGCGATTTTCGTAGTGTGTGTGCCgtttgtgcgcgtgtgtgtgaatgttcaAGTGTTTGTGAGACTGTATCTGAATGTATGTCACATGCATGGTGCAAAACCTgctgttttatctatttattgtGAGGTGTTTACAGTTTTGTTTTCTCCCCCTTTaaattcttcatttttttaatacaCTGTAACCTCCTGGGTTTGTGCGGTGTGCTTGTGTGCGCGtatgtaagtgagtgagtgagtgtgtgtgtgtgtgtatgtatgtagctGCAGCAGTTGTATGTGAACATCTCTTGTTGGAAAAGCAGCAGGGGTTCATCTGTTTGTCTCTTTCTCATGTGGCTGCTCCACTCCACTCAAGCACTATTTTCTTTGGGTTCCTTTAATCTGTTGAAATCAAAGCTGCTTTTCTATGATTTCCCAgtctcttttgttttgttttttctcctgGAATCTGAGACCCTTCATCATCGAGGGTCTGTGAAGCGTAGAGAGATGGGTTTATTTTCTGTTCTTACCTCTGTTTTTGATGACTGATTGTACGTCCCCTTTGCTAAAGGAGCGATTCTGTTATTTGTGTTAACAGTAGTTCATAAGGGAGAGACTACAGTGACATCTCAGTATgtttctttatcatcatcatcatcatcatcattccaCTTTATATGAAAATAAGGAAAACGAACAAAAAAGGGACGTTTTGTTTCCTGTAAGTCTTCATGGTGGTGCCCTTCCTGTGGGTCCAGCATGAGCTCTCTTCTGTGAAGAGGACGGTACCTCACAAGGCTACTCGTAGTTGTTGTTTGTATGTACCACAATCTGAATGCCCGTTCCAATGGCATCATCTAtctttgaggtgttttttttttttttttttttttttaagtcccaCCTggaagaatgaataaaaaaaaaacttatatgacaaaaaatgtttaataaacccAGGGCATTAAGTGTTGACCAGCACTACTCTTGTCTGTGTGTCATTTGTCAAGGATGTGAGAAGGGAGAATGCACGAGTGTGTGCTTCATAATCTTATAACCCAGGGAAACGATCGAAGTCAGATCAAATTTAATCACAagcttacaattttttttaatttgcatagttattttttttctcctgacaGATTTACCTATAATTGGTTGGCACAatgtatcatttcagcattgatatcgcgaTGTGATCATTCACCGTAGTCACATCGCAGCATATATGCAGTGTCGAGTTTTTTGgatcttcatttgtttttccatatttgcatgtgttgtttgATGCCTTTGATTGTCCACTGATTTGAAACAATATTCCGGTATAGTGACCATTTGTGACCTTAACGATGATTAAGGTTATTGAATTCTTTTTATCATTCGGTTACTGTTTTTAAATCCTGTTAGACTCAGGATGTGATGAAACACCTTTATTTTGTTGCATCTTTTtctgattgtatttatagataggtctgcatgaaaatactcacaacacatgcaaatagcacaTACCGCTACAAAAAAATTGTCATGGCCAAAGTGTTTATAggttgtttattagattttatggagagcCACTCTCACTGCAGAACCATCCCATTTGATCTAACATCAATTCTTTCCAcatagagatattaagtcatctgggGAAATTGCTcccatattgcaatatatatagcaaaataaaaaaaattgcaatgttaGCTATTTCCATTATCgcgcagccctaatatatatatatatatatatatatatatatatatatatatatatatatatgtatatatatatata

Function

symbol description
epc1b Predicted to contribute to histone acetyltransferase activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of Piccolo NuA4 histone acetyltransferase complex. Orthologous to human EPC1 (enhancer of polycomb homolog 1).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0035267 NuA4 histone acetyltransferase complex cellular_component
GO:0005634 nucleus cellular_component
GO:0032777 Piccolo NuA4 histone acetyltransferase complex cellular_component
GO:0004402 histone acetyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090609-1 Predicted to contribute to histone acetyltransferase activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of Piccolo NuA4 histone acetyltransferase complex. Orthologous to human EPC1 (enhancer of polycomb homolog 1).

Ensembl:

ensembl_id ENSDARG00000060054

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032874 True 4485 mRNA 0.47 14 43585571 43605556

Neighbor

gene id symbol gene type direction distance location
XLOC_016767 itgb1b coding downstream 1675 43577294 ~ 43583896 (-)
XLOC_016766 NA coding downstream 13811 43567145 ~ 43571760 (-)
XLOC_016765 CABZ01058721.1 coding downstream 40229 43537846 ~ 43545342 (-)
XLOC_016764 CABZ01058723.1 coding downstream 68553 43509502 ~ 43517018 (-)
XLOC_016763 NA coding downstream 206478 43378102 ~ 43379093 (-)
XLOC_016769 itgb1b.1 coding upstream 13999 43619555 ~ 43635777 (-)
XLOC_016770 NA coding upstream 24197 43629753 ~ 43630083 (-)
XLOC_016771 itgb1b.2 coding upstream 33427 43638983 ~ 43653328 (-)
XLOC_016772 FO704635.1 coding upstream 72483 43678039 ~ 43698531 (-)
XLOC_016773 kif5ba coding upstream 100037 43705593 ~ 43739740 (-)
XLOC_016755 NA non-coding downstream 598601 42981204 ~ 42986970 (-)
XLOC_016754 NA non-coding downstream 606959 42962862 ~ 42978612 (-)
XLOC_016786 BX323035.1 non-coding upstream 917300 44522856 ~ 44524381 (-)
XLOC_016787 NA non-coding upstream 956458 44562014 ~ 44563193 (-)
XLOC_016791 CR788281.2 non-coding upstream 1157526 44763082 ~ 44763375 (-)
XLOC_016792 CR788281.1 non-coding upstream 1168719 44774275 ~ 44774595 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000152_00839499_00856309 EPC1B coding CI01000152 null 839499 ~ 856309 (+)