XLOC_016767 (itgb1b)


Basic Information

Item Value
gene id XLOC_016767
gene name itgb1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 43577294 ~ 43583896 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032873
TTAATTGTGTTTCAGAATCAGATTGGCTGGAGGAATGTCACTCGTCTCCTTGTGTTTTCCACGGACGCTGGATTCCACTTTGCTGGAGACGGAAAACTGGGCGGCATCGTGCTTCCTAATGACGGGAAATGCCATCTGCAGGATAACATTTACACCATGAGCCATTactatGACTATCCATCCATTGCACATCTCGTTCAGAAACTGAGTGAAAACAACATCCAGACCATTTTTGCTGTAACCGAGGAGTTCCAGCCTGTTTACCAGGAGCTGAAAAACCTCATTCCCAAGTCAGCAGTGGGAACGCTTACCTCCGACTCCAACAATGTGATCAAACTCATTATTGATGCATATAATTCTCTGTCCTCCGAGGTGATTCTGGAAAACAGCAAGCTACCTGAAGGTGTGTCCATCTCCTACGTCTCCCACTGCAAGAACGGAGTGAGTGGAACAGGAGATAATGGGAGAAAGTGCTCCAACATCTCCATTGGGGACGAGGTGGCATTCGAGGTGGCGATCACTGCAAAAGGCTGTCCTTTGAATGGAAAGTCTGAGACCATGAAGATTAAACTGCTGGGCTTCACTGAGGAGGTGGAGGTCGTCCTCAACTTCATCTGTGAATGCGAGTGTCACAAAGATGGGATTAAAAACAGCCCAGTGTGTCATTTTGGCAATGGTACCCTGGAGTGTGGAGCGTGCAGGTGCAATGAGGGACGCATTGGCAGAGTTTGTGAATGTAGCAAAGATGAGGTGAGGACTGAAGATTTGGACGCAAACTGTCGTATGGATAATGGCACTGACATCTGCAGCAACAACGGAGACTGCGTTTGTGGAACGTGCGAATGCAAGAAAAGAGACAACCCTGAGGAGAGATACAGTGGAAAGTTCTGCGAGTGCGACAACTTTAACTGCGATCGCTCAAACAACAAGCTCTGTGGAGGTCACGGTCGGTGTGATTGCAGAAAGTGTATCTGTGATGCTAACTACACCGGCAGCGCGTGCGACTGCTCTCTGGACACCTCCACCTGTCTGGCCAGCAATAAACAGATCTGTAACGGCCGCGGCAACTGTGAATGCGGCGCCTGTAAATGTACCGACACCAAGTTTCAGGGTCCGACTTGTGAAATCTGCCCAACGTGCCCTGGAGTTTGTACTGAACACAAGGATTGCGTCCAGTGCCGGGCATTTGGTACCGGTGACAAGAAAGACACGTGCGAGGAGCAATGCAGCTATTTTACTATGAAGGTCGTGAAAAAGAAAGAGGATCTTCCTCAACCCAACGATCAGCCCATCATCAATCACTGCAAAGAGCGGGACGCCAACGACTGCTGGTTCTTCTTCACTTACGCCACCAGGAACGACAGCAGCGTTATGGTCCACGTGGCCGAGGAGCTTGAGTGTCCCTCTGGCCCTGACATCATCCCTATTGTAGCGGGTGTGGTCGCAGGAATCGTTCTGATAGGTTTAGCCCTTCTGCTCATCTGGAAGCTGCTCATGATCATTCATGACCGCAGAGAGTTTGCCAAATTCGAGAAGGAGAAGATGAATGCTAAGTGGGACGCG

Function

symbol description
itgb1b Enables protein heterodimerization activity. Involved in cell adhesion mediated by integrin and endothelial cell-matrix adhesion via fibronectin. Acts upstream of or within several processes, including Kupffer's vesicle development; cell migration involved in gastrulation; and muscle cell development. Predicted to be located in several cellular components, including lamellipodium; melanosome; and ruffle membrane. Predicted to be integral component of membrane. Predicted to be part of integrin complex. Is expressed in several structures, including cardiovascular system; digestive system; mesoderm; muscle; and pleuroperitoneal region. Orthologous to human ITGB1 (integrin subunit beta 1).

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0016477 cell migration biological_process
GO:0055013 cardiac muscle cell development biological_process
GO:0045214 sarcomere organization biological_process
GO:0043114 regulation of vascular permeability biological_process
GO:0001568 blood vessel development biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0007155 cell adhesion biological_process
GO:0007160 cell-matrix adhesion biological_process
GO:0008305 integrin complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038023 signaling receptor activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030909-10 Enables protein heterodimerization activity. Involved in cell adhesion mediated by integrin and endothelial cell-matrix adhesion via fibronectin. Acts upstream of or within several processes, including Kupffer's vesicle development; cell migration involved in gastrulation; and muscle cell development. Predicted to be located in several cellular components, including lamellipodium; melanosome; and ruffle membrane. Predicted to be integral component of membrane. Predicted to be part of integrin complex. Is expressed in several structures, including cardiovascular system; digestive system; mesoderm; muscle; and pleuroperitoneal region. Orthologous to human ITGB1 (integrin subunit beta 1).

Ensembl:

ensembl_id ENSDARG00000104484

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032873 True 1563 mRNA 0.50 9 43577294 43583896

Neighbor

gene id symbol gene type direction distance location
XLOC_016766 NA coding downstream 5534 43567145 ~ 43571760 (-)
XLOC_016765 CABZ01058721.1 coding downstream 31952 43537846 ~ 43545342 (-)
XLOC_016764 CABZ01058723.1 coding downstream 60276 43509502 ~ 43517018 (-)
XLOC_016763 NA coding downstream 198201 43378102 ~ 43379093 (-)
XLOC_016762 crema coding downstream 380699 43159171 ~ 43196595 (-)
XLOC_016768 epc1b coding upstream 1675 43585571 ~ 43605556 (-)
XLOC_016769 itgb1b.1 coding upstream 35659 43619555 ~ 43635777 (-)
XLOC_016770 NA coding upstream 45857 43629753 ~ 43630083 (-)
XLOC_016771 itgb1b.2 coding upstream 55087 43638983 ~ 43653328 (-)
XLOC_016772 FO704635.1 coding upstream 94143 43678039 ~ 43698531 (-)
XLOC_016755 NA non-coding downstream 590324 42981204 ~ 42986970 (-)
XLOC_016754 NA non-coding downstream 598682 42962862 ~ 42978612 (-)
XLOC_016786 BX323035.1 non-coding upstream 938960 44522856 ~ 44524381 (-)
XLOC_016787 NA non-coding upstream 978118 44562014 ~ 44563193 (-)
XLOC_016791 CR788281.2 non-coding upstream 1179186 44763082 ~ 44763375 (-)
XLOC_016792 CR788281.1 non-coding upstream 1190379 44774275 ~ 44774595 (-)

Expression


Co-expression Network